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The map label for this gene is rpoE [H]

Identifier: 183221491

GI number: 183221491

Start: 2204128

End: 2204697

Strand: Direct

Name: rpoE [H]

Synonym: LEPBI_I2109

Alternate gene names: 183221491

Gene position: 2204128-2204697 (Clockwise)

Preceding gene: 183221490

Following gene: 183221492

Centisome position: 61.23

GC content: 41.23

Gene sequence:

>570_bases
ATGAGTGATGAGATTAGAAGTTTGATCGATAATTGCCTTCTTGGAAAACGAGAAGCATGGCAAACCCTCATCCAAAAATT
CCATCGTCTCATCATCGGAACTTGCGCCCACTATGTACCAAGGGAAGAAGTGGTGGACACTTCTCAATTGGTCTATTTAA
AACTCACAGAAAATGACTACCATTTGCTTCGCAAGTTCAAAGGAGAAAGTTTACCTGCCTTCATCATCTATTTGAGTGAA
ATTTCCAAAAATATCAGCATGTCCCATACAAGGAGCATCCGCCGAACGGAATACAGAGAGGGCATTTCCCTCGATCTGAG
TATCGATATTCTAGACGAGAGACAAACGCAAGAAGACGTCTACTTTGAATGGGAAGAGAAACAAGAGTTTTACGACCTCA
TTGATGCCCTAGACGAACCACACAAAGAAATCCTCATCCTCCGCTTAAAGGGTTACAAATTCAAAGAAATCGCAGAAATT
TTAGAAGTTCCCATCGGAACAGTACTAGCTCGGGCCAACCGAGCCAAAGAAAAGTTAAAAAAAATACAAACCAAGGAAAT
AAAGCCGTAA

Upstream 100 bases:

>100_bases
AGTTTATCCGCAAAACGATTTTCCAATCCCATCATTTCCAAAAAAGATTAGAAAACGTATTGATATCTTGCAAAAATTCC
GTCGAATCTCAAAAAGAACT

Downstream 100 bases:

>100_bases
CGGGGGGTAATCAATATTATGGAGACAAAAGATCCGAACCCATTTATGAACCGACTCAAACTCAAAGAAGCCATTTACCT
AATGTCCCAGGGAGAGGAAG

Product: putative RNA polymerase sigma-E factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSDEIRSLIDNCLLGKREAWQTLIQKFHRLIIGTCAHYVPREEVVDTSQLVYLKLTENDYHLLRKFKGESLPAFIIYLSE
ISKNISMSHTRSIRRTEYREGISLDLSIDILDERQTQEDVYFEWEEKQEFYDLIDALDEPHKEILILRLKGYKFKEIAEI
LEVPIGTVLARANRAKEKLKKIQTKEIKP

Sequences:

>Translated_189_residues
MSDEIRSLIDNCLLGKREAWQTLIQKFHRLIIGTCAHYVPREEVVDTSQLVYLKLTENDYHLLRKFKGESLPAFIIYLSE
ISKNISMSHTRSIRRTEYREGISLDLSIDILDERQTQEDVYFEWEEKQEFYDLIDALDEPHKEILILRLKGYKFKEIAEI
LEVPIGTVLARANRAKEKLKKIQTKEIKP
>Mature_188_residues
SDEIRSLIDNCLLGKREAWQTLIQKFHRLIIGTCAHYVPREEVVDTSQLVYLKLTENDYHLLRKFKGESLPAFIIYLSEI
SKNISMSHTRSIRRTEYREGISLDLSIDILDERQTQEDVYFEWEEKQEFYDLIDALDEPHKEILILRLKGYKFKEIAEIL
EVPIGTVLARANRAKEKLKKIQTKEIKP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=190, Percent_Identity=26.8421052631579, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22340; Mature: 22209

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEIRSLIDNCLLGKREAWQTLIQKFHRLIIGTCAHYVPREEVVDTSQLVYLKLTENDY
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCHH
HLLRKFKGESLPAFIIYLSEISKNISMSHTRSIRRTEYREGISLDLSIDILDERQTQEDV
HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
YFEWEEKQEFYDLIDALDEPHKEILILRLKGYKFKEIAEILEVPIGTVLARANRAKEKLK
EEEHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
KIQTKEIKP
HHHHHCCCC
>Mature Secondary Structure 
SDEIRSLIDNCLLGKREAWQTLIQKFHRLIIGTCAHYVPREEVVDTSQLVYLKLTENDY
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCHH
HLLRKFKGESLPAFIIYLSEISKNISMSHTRSIRRTEYREGISLDLSIDILDERQTQEDV
HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
YFEWEEKQEFYDLIDALDEPHKEILILRLKGYKFKEIAEILEVPIGTVLARANRAKEKLK
EEEHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
KIQTKEIKP
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]