| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
Click here to switch to the map view.
The map label for this gene is gpsA1 [H]
Identifier: 183221319
GI number: 183221319
Start: 2023651
End: 2025669
Strand: Direct
Name: gpsA1 [H]
Synonym: LEPBI_I1936
Alternate gene names: 183221319
Gene position: 2023651-2025669 (Clockwise)
Preceding gene: 183221316
Following gene: 183221361
Centisome position: 56.22
GC content: 41.46
Gene sequence:
>2019_bases ATGACAGAAAAAGAAGCCACTTTGGGACGTTGGCACAAAGAATTTTTTGAGAACATTCACTTATTTGTAAAATCCGGTCT TTCGGAACAAGAAGCAAAGTCCATTTTAGAAGAATTTTTAGTTTTATCCCAATCCACGCCCAAACCCAAGGTGATGGAAA TTTTCCAAGAACCAGAACGCCTGGAAGAAATCGGAGTGTACACAGACATCCGTCCAGAACCACGCGATTTTATGCTCAAA TTTCTGGATCCGATCATGAATAAATTTAAGGTCGAAGGGACTGAAAATTTAAAACTACTCGATGGGATCATTGGCAGATA CCCTGTCACTCTCATCTCAAACCACTTGAGCCATTTGGATGCGCCTGCCATTTTTACCTTACTTTACAACTCAGGCCCAG AAGGTCGTAAGATTGCCGAATCCCTTGTTTTCATTGCAGGTCGCCTCGCCTTTGAACCAGACTTCACTCGCCTCGGTCTT TATATGTTTGGGACCTTACTTGTTTGCTCCAAAAAGGACATGGCAGACAACCCATCCCTTTCCGATGTGATGACCAAAAT TAACATGCGTGCCTTCCGTAATTCTCAAAAATTACAATCAGATGGAAAGGTGATCTCCATCTTTCCGGAAGGGACAAGGT CTCGTGATGGAAGGCTTATGCCGTTTGTGGACACAGTTTACCATTATGTGGCAAACAAAGTCATCTTGCCAATCTCACTC GAAGGTACAGAAAAAATCCTTCCCATTGAAGGCTTACTTTTCAACCAAGCAGTTGGTAAACTTGTAATCGGCAAACCTGT GCTAGTCGGTGAGTTAACCAAAAAGGAAATGGAAAGTTTCCCATCTCATATTGAACAAATTTCGTTTCCTGGCACTGGTG ACAAAAAACAATTCATCATTGATAACCTTGCACTCCTAGTGGGAAGTAATCTCAATAAACACAAACATGGAACATATCGA AACTTGTATCGAGGTGATGTTAGAGAAACAAACCAACTCATTTCATTACCAAAAAAACCAGAAGAACATGTGGTGATTAT TGGTTCTTCCAATATGTCCGTGGCTTTCGCTTGTATCGTCGCCAACAAAAATGTAAAAGTAACAATTTACCATCCCGACT CGGAAATGGTGGCTCGTAGTAATGAAGAAAGACGTGACATCATCCACTACCCAATTTACAAACTGCCACCTAACATAGAG TTTTCGGACAAACCTGATGTGTTAGAATCAGCGACTCTTTTTGTCCAAGGAACAAACCCTTGGGAGTTTGACGCTGTTTA TTCAAAAATCAGAACGTATTTACAAAAAAACAAGTCCCCAATGGTGAATGTGATCAAAGGATTTACCGGATCCAAAAAAG GACTCATCCTGGAAGATCTAAATGAATTACTTCTCATCGAAAGGGAACGTTTGGCGGTTGTATCTGGTGCCTGTTACCCA GACCAAATCATGGAACGTAAGATATCTGGTTTTGAAATCTCTGCTTTTGAAGATTCTCTCATCCCCAAATTAAAAGAACT CCTCTCGAATAATTATGTGTTCACAAGACCTGCGATCAACTCAAGAGACACCAAAGGTGTCCAACTCGGAGGAGCGCTCA AAACCATTTATGCACTTGCAATGGGACTTGTGGAAGGTTATTTCAAACGCGAATTAGGTGGTAATGTCGATAACACCCTA TTCCATTTAAGCAATCGATTCTTCAATGAAATGGTTTCGATAGGAGTTTTACTCGGCGGGGATCCAACCACATTCAATGG ATTGTCGGGTATGACCGATTTTATGTTGGCTTGTTTTGGATCCGACACTCGGGACCGTAAGTACGGATATGATCTTGCCT ATGGTACAAGACCAGAAAAGATCACCAATGGTTTTTATGGTTTAAAGGTATTACCGAATCTCATCCAACTTGACGAAAAA AGGCACCCGATCGTCGCTTCCGCTTACAAAACTGTCATCCAAAATCAAAACTTTGACGTCGTCGCAGAAGAATTGCAGAA GCAGTTGGCTAGAGTTTAG
Upstream 100 bases:
>100_bases AAGTCAGTTTAGAGAAATCCTAGATTTACGCAATCAATTGTAAAAATCGAATAGACAAATCGAAACTTTTCAGTACGCTG ATGTCGGTTTAGAGGGATAC
Downstream 100 bases:
>100_bases GAAGAGAAACGAGAAAAACAGTCTGGCCAGGTTCGGAAAACAATTGAATTTGGCCTTTATGCCTTTCTTCCACTGATTGT TTGACAATCCCGAGGCCAAG
Product: glycerol-3-phosphate dehydrogenase
Products: NA
Alternate protein names: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [H]
Number of amino acids: Translated: 672; Mature: 671
Protein sequence:
>672_residues MTEKEATLGRWHKEFFENIHLFVKSGLSEQEAKSILEEFLVLSQSTPKPKVMEIFQEPERLEEIGVYTDIRPEPRDFMLK FLDPIMNKFKVEGTENLKLLDGIIGRYPVTLISNHLSHLDAPAIFTLLYNSGPEGRKIAESLVFIAGRLAFEPDFTRLGL YMFGTLLVCSKKDMADNPSLSDVMTKINMRAFRNSQKLQSDGKVISIFPEGTRSRDGRLMPFVDTVYHYVANKVILPISL EGTEKILPIEGLLFNQAVGKLVIGKPVLVGELTKKEMESFPSHIEQISFPGTGDKKQFIIDNLALLVGSNLNKHKHGTYR NLYRGDVRETNQLISLPKKPEEHVVIIGSSNMSVAFACIVANKNVKVTIYHPDSEMVARSNEERRDIIHYPIYKLPPNIE FSDKPDVLESATLFVQGTNPWEFDAVYSKIRTYLQKNKSPMVNVIKGFTGSKKGLILEDLNELLLIERERLAVVSGACYP DQIMERKISGFEISAFEDSLIPKLKELLSNNYVFTRPAINSRDTKGVQLGGALKTIYALAMGLVEGYFKRELGGNVDNTL FHLSNRFFNEMVSIGVLLGGDPTTFNGLSGMTDFMLACFGSDTRDRKYGYDLAYGTRPEKITNGFYGLKVLPNLIQLDEK RHPIVASAYKTVIQNQNFDVVAEELQKQLARV
Sequences:
>Translated_672_residues MTEKEATLGRWHKEFFENIHLFVKSGLSEQEAKSILEEFLVLSQSTPKPKVMEIFQEPERLEEIGVYTDIRPEPRDFMLK FLDPIMNKFKVEGTENLKLLDGIIGRYPVTLISNHLSHLDAPAIFTLLYNSGPEGRKIAESLVFIAGRLAFEPDFTRLGL YMFGTLLVCSKKDMADNPSLSDVMTKINMRAFRNSQKLQSDGKVISIFPEGTRSRDGRLMPFVDTVYHYVANKVILPISL EGTEKILPIEGLLFNQAVGKLVIGKPVLVGELTKKEMESFPSHIEQISFPGTGDKKQFIIDNLALLVGSNLNKHKHGTYR NLYRGDVRETNQLISLPKKPEEHVVIIGSSNMSVAFACIVANKNVKVTIYHPDSEMVARSNEERRDIIHYPIYKLPPNIE FSDKPDVLESATLFVQGTNPWEFDAVYSKIRTYLQKNKSPMVNVIKGFTGSKKGLILEDLNELLLIERERLAVVSGACYP DQIMERKISGFEISAFEDSLIPKLKELLSNNYVFTRPAINSRDTKGVQLGGALKTIYALAMGLVEGYFKRELGGNVDNTL FHLSNRFFNEMVSIGVLLGGDPTTFNGLSGMTDFMLACFGSDTRDRKYGYDLAYGTRPEKITNGFYGLKVLPNLIQLDEK RHPIVASAYKTVIQNQNFDVVAEELQKQLARV >Mature_671_residues TEKEATLGRWHKEFFENIHLFVKSGLSEQEAKSILEEFLVLSQSTPKPKVMEIFQEPERLEEIGVYTDIRPEPRDFMLKF LDPIMNKFKVEGTENLKLLDGIIGRYPVTLISNHLSHLDAPAIFTLLYNSGPEGRKIAESLVFIAGRLAFEPDFTRLGLY MFGTLLVCSKKDMADNPSLSDVMTKINMRAFRNSQKLQSDGKVISIFPEGTRSRDGRLMPFVDTVYHYVANKVILPISLE GTEKILPIEGLLFNQAVGKLVIGKPVLVGELTKKEMESFPSHIEQISFPGTGDKKQFIIDNLALLVGSNLNKHKHGTYRN LYRGDVRETNQLISLPKKPEEHVVIIGSSNMSVAFACIVANKNVKVTIYHPDSEMVARSNEERRDIIHYPIYKLPPNIEF SDKPDVLESATLFVQGTNPWEFDAVYSKIRTYLQKNKSPMVNVIKGFTGSKKGLILEDLNELLLIERERLAVVSGACYPD QIMERKISGFEISAFEDSLIPKLKELLSNNYVFTRPAINSRDTKGVQLGGALKTIYALAMGLVEGYFKRELGGNVDNTLF HLSNRFFNEMVSIGVLLGGDPTTFNGLSGMTDFMLACFGSDTRDRKYGYDLAYGTRPEKITNGFYGLKVLPNLIQLDEKR HPIVASAYKTVIQNQNFDVVAEELQKQLARV
Specific function: De novo phospholipid biosynthesis; glycerol-3 phosphate formation. [C]
COG id: COG0240
COG function: function code C; Glycerol-3-phosphate dehydrogenase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1790037, Length=325, Percent_Identity=24.9230769230769, Blast_Score=94, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR013328 - InterPro: IPR006168 - InterPro: IPR006109 - InterPro: IPR011128 - InterPro: IPR016040 [H]
Pfam domain/function: PF07479 NAD_Gly3P_dh_C; PF01210 NAD_Gly3P_dh_N [H]
EC number: =1.1.1.94 [H]
Molecular weight: Translated: 75763; Mature: 75631
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKEATLGRWHKEFFENIHLFVKSGLSEQEAKSILEEFLVLSQSTPKPKVMEIFQEPER CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHH LEEIGVYTDIRPEPRDFMLKFLDPIMNKFKVEGTENLKLLDGIIGRYPVTLISNHLSHLD HHHCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCHHHHHHHHHHHCC APAIFTLLYNSGPEGRKIAESLVFIAGRLAFEPDFTRLGLYMFGTLLVCSKKDMADNPSL CHHEEHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH SDVMTKINMRAFRNSQKLQSDGKVISIFPEGTRSRDGRLMPFVDTVYHYVANKVILPISL HHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEE EGTEKILPIEGLLFNQAVGKLVIGKPVLVGELTKKEMESFPSHIEQISFPGTGDKKQFII CCCCCCCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH DNLALLVGSNLNKHKHGTYRNLYRGDVRETNQLISLPKKPEEHVVIIGSSNMSVAFACIV HHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEE ANKNVKVTIYHPDSEMVARSNEERRDIIHYPIYKLPPNIEFSDKPDVLESATLFVQGTNP ECCCEEEEEECCCHHHHHCCCCHHHHHEECCCEECCCCCCCCCCCCCCCCCEEEEECCCC WEFDAVYSKIRTYLQKNKSPMVNVIKGFTGSKKGLILEDLNELLLIERERLAVVSGACYP CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCH DQIMERKISGFEISAFEDSLIPKLKELLSNNYVFTRPAINSRDTKGVQLGGALKTIYALA HHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECHHHHHHHHHH MGLVEGYFKRELGGNVDNTLFHLSNRFFNEMVSIGVLLGGDPTTFNGLSGMTDFMLACFG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHC SDTRDRKYGYDLAYGTRPEKITNGFYGLKVLPNLIQLDEKRHPIVASAYKTVIQNQNFDV CCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH VAEELQKQLARV HHHHHHHHHHCC >Mature Secondary Structure TEKEATLGRWHKEFFENIHLFVKSGLSEQEAKSILEEFLVLSQSTPKPKVMEIFQEPER CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHH LEEIGVYTDIRPEPRDFMLKFLDPIMNKFKVEGTENLKLLDGIIGRYPVTLISNHLSHLD HHHCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCHHHHHHHHHHHCC APAIFTLLYNSGPEGRKIAESLVFIAGRLAFEPDFTRLGLYMFGTLLVCSKKDMADNPSL CHHEEHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH SDVMTKINMRAFRNSQKLQSDGKVISIFPEGTRSRDGRLMPFVDTVYHYVANKVILPISL HHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEE EGTEKILPIEGLLFNQAVGKLVIGKPVLVGELTKKEMESFPSHIEQISFPGTGDKKQFII CCCCCCCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH DNLALLVGSNLNKHKHGTYRNLYRGDVRETNQLISLPKKPEEHVVIIGSSNMSVAFACIV HHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEE ANKNVKVTIYHPDSEMVARSNEERRDIIHYPIYKLPPNIEFSDKPDVLESATLFVQGTNP ECCCEEEEEECCCHHHHHCCCCHHHHHEECCCEECCCCCCCCCCCCCCCCCEEEEECCCC WEFDAVYSKIRTYLQKNKSPMVNVIKGFTGSKKGLILEDLNELLLIERERLAVVSGACYP CHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCH DQIMERKISGFEISAFEDSLIPKLKELLSNNYVFTRPAINSRDTKGVQLGGALKTIYALA HHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECHHHHHHHHHH MGLVEGYFKRELGGNVDNTLFHLSNRFFNEMVSIGVLLGGDPTTFNGLSGMTDFMLACFG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHC SDTRDRKYGYDLAYGTRPEKITNGFYGLKVLPNLIQLDEKRHPIVASAYKTVIQNQNFDV CCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH VAEELQKQLARV HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA