Definition Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence.
Accession NC_010602
Length 3,599,677

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The map label for this gene is rbpA2 [H]

Identifier: 183221265

GI number: 183221265

Start: 1974228

End: 1974497

Strand: Reverse

Name: rbpA2 [H]

Synonym: LEPBI_I1881

Alternate gene names: 183221265

Gene position: 1974497-1974228 (Counterclockwise)

Preceding gene: 183221267

Following gene: 183221264

Centisome position: 54.85

GC content: 38.15

Gene sequence:

>270_bases
ATGGTTTCAAATAAGATTTATGTTGGGAATTTAAAATTTTCCCTAAAGGAAGAGAATATCAGGCAAATTTTTTCAGTGTA
TGGAGCAATCCAAGATTTGAAAATGATTCATGACCGAGAAACTGGTAATTTTAGAGGGTTTGCCTTTATCACCTACGCAA
GTCCAAGTGAAGCAGAGGAGGCAGTGGCACAAATGAATGGCCAACCCATAGATGGTCGCAACCTCAAAGTCACCTTCGCT
GAAGACAAAAGAAAAGAAAAACAGAACTAA

Upstream 100 bases:

>100_bases
TTATGCAAGAATTATTTCCAGTTGACAATTTCTACCAATTCTATCTAATCAAGCCGTTCCAAGGATCTTGGGGCATGCAT
TTCTTTTTAAGAGGACAGGA

Downstream 100 bases:

>100_bases
AATTCACTTTTCTTACCAAGACCACCAAATAAAGAAGGAGGATGACTTCATCCTCTCCCTCTCCTGTTCATAAAATAGAA
GAATACTCCCCAAACCTTTG

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MVSNKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEEAVAQMNGQPIDGRNLKVTFA
EDKRKEKQN

Sequences:

>Translated_89_residues
MVSNKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEEAVAQMNGQPIDGRNLKVTFA
EDKRKEKQN
>Mature_89_residues
MVSNKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEEAVAQMNGQPIDGRNLKVTFA
EDKRKEKQN

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=73, Percent_Identity=41.0958904109589, Blast_Score=72, Evalue=7e-14,
Organism=Homo sapiens, GI242117971, Length=73, Percent_Identity=41.0958904109589, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI21361809, Length=73, Percent_Identity=41.0958904109589, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=40.7894736842105, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI56699409, Length=73, Percent_Identity=39.7260273972603, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI153252068, Length=76, Percent_Identity=39.4736842105263, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI35493811, Length=73, Percent_Identity=38.3561643835616, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI17298690, Length=73, Percent_Identity=41.0958904109589, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI209862867, Length=76, Percent_Identity=39.4736842105263, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI17978512, Length=76, Percent_Identity=39.4736842105263, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI4757926, Length=73, Percent_Identity=38.3561643835616, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI14149675, Length=83, Percent_Identity=34.9397590361446, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4557493, Length=83, Percent_Identity=34.9397590361446, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=40.7894736842105, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=46.0526315789474, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=75, Percent_Identity=41.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25141353, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17510027, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17510025, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508587, Length=83, Percent_Identity=37.3493975903614, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32564504, Length=78, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI32564506, Length=78, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324449, Length=60, Percent_Identity=40, Blast_Score=61, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281365444, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281365442, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281365440, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281365438, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281365436, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281365434, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24655233, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24655242, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24655237, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24655228, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24582417, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI45550943, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582419, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582423, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582421, Length=73, Percent_Identity=41.0958904109589, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=41.0958904109589, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=41.0958904109589, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17137710, Length=85, Percent_Identity=38.8235294117647, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10174; Mature: 10174

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MVSNKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEE
CCCCEEEEECEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHH
AVAQMNGQPIDGRNLKVTFAEDKRKEKQN
HHHHCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MVSNKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEE
CCCCEEEEECEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHH
AVAQMNGQPIDGRNLKVTFAEDKRKEKQN
HHHHCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]