| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is bdlA [H]
Identifier: 183220969
GI number: 183220969
Start: 1655183
End: 1657909
Strand: Reverse
Name: bdlA [H]
Synonym: LEPBI_I1582
Alternate gene names: 183220969
Gene position: 1657909-1655183 (Counterclockwise)
Preceding gene: 183220970
Following gene: 183220968
Centisome position: 46.06
GC content: 38.21
Gene sequence:
>2727_bases ATGAAGTCAGTCAGTACAAACACAAAGTTGATCGGATATTTTTTAATTGGAATCATATTTACCATATGGATCAGTTTGTA TAGTTCCGGAATTTTTTCTAATAAAGAAACGGTGAATTTAAACACAGAAGAGAGGATTCAAAAATCAGATTCAATCTCAC ATCTGTTACGACTTAGTTTATCAATCCATGAAGATGTAACCAACCTTTTGGTTTCTGTCGAATTGCAGGAAACACTCGTC GCAAAAACAAAGTATGATATTGAAAAGTTAAATCAATCCTTCGACCAAGTTTCCAGTGTATTTGTCAATGAAGATGAAAA AACCAAATTTCAAACGGTCATAAACGAAAAAAATAAATACCTCGAATCTGTTTCTATCAGTTTAAACCAATTGGGAGTTG CCGGAAACAAAAAACAGAAACCAAATCTAAATCCGGAAGTATCAACTCATTGGAAAAATTATTCTTCTCACCTTCAGGAA TTACAAAAAATCTTTTTGGTTTCCAACCTAAATGAAATTAAATCAAAAATTGAGACAAATACGAAAGATGATTTTACAAT CTACATAGCAAGTGCCATCTTTATCGTCACCTCTTTTGTATTACTTTTGTTTCTCATGAAACAAGTTAACAATCCATTAA AGGAAGCAATCCAAATCAAAACTGCTTTGGATAGTGTTTCTACAAATGTAATGATTTCCGATTTGAATTTAGATGTTGTG TATATGAACAAATCGATTCATAAAATGTTTGCCAATTCAGAATCAGACATCCAAAAACAAATTCGCAATTTTTCACTCAA AAATCTCATGGGAAGTAATATTGATGGTTACCACAAAGACCCAAGCCACCAAAGAAAACTACTCGGAACGTTTACTTCTG AACATAGATCGAGCATTAGAATTGGAAATCGTGAATTTAACCTCATCGCCAATCCCATTCTAACGGAAAAAGGAGAAAGG TTAGGAAGTGTTGTGGAATGGGCTGATGTAACGGAAACAAATGCGCATTCTCGTGCAGTCGATCGTTCCCAAGCAATGAT TGAATTCAGTATGGATGGAACAGTCATCACGGCGAATGAAAATTTTTTAAATTTAATGGGATATAGTTTAGCTGAAATTA AAGGCCAACACCACCGTATGTTTGTAGAGTCCAAAGAATCCAACTCCGACGAATACAAACAATTTTGGATGGCATTGAAT CGGGGTGATTACCAAACAGCAGAATACAAACGTCTCGGTAAAAACGGAAAAGAGGTTTGGTTACAAGCAACCTATACACC AATCCTTGATGCTAGCGGTGTCCCGACAAAAGTAATCAAATTTGCCTCCGATATCACCGAAAACAAAATCCAAACCAGAG AATTTGTGAGCCAAATCGAAGCCATTAACAAAGCGCAGGCGACCATTGAATTTCATTTGGATGGAACCATCAAAACGGCG AATGAAATCTTTCTGAATACAATGGGATATTCGTTAACCGAAATCGCTGGAAAACACCATAGAATGTTTGTGGAACCAAA CTATGCAAATACAGAAGACTATAAACAATTTTGGGCTTCCCTCGGAAGAGGAGAATTCCAAACGGCAGAATACAAACGAC TTGGTAAGGGAGGAAAAGAAGTTTGGCTACAAGCCACTTATAATCCAATCCTAGACCTAAATGGCAAACCGTATAAAGTG ATCAAATTTGCATCCGATATCACTGAACAAAAAAAATTAGCAATCGAAACAACAAGGATTGTAGACGATTTAGTTGTTGG ACTGGCGGCTCTAGAAAATGGTGATCTCACTCAGCTGATCACCAACCATTACGAAGGTGGATTTGCAAAATTACGTGATT CATTCAATAACACTTCCAAAAAACTAGTGGATATCATCAATGATGTCCGCACAAACACGGATGCTCTTGTGACGGCTGCC GATGAAGTGGCATCAACCGCAAGCACACTTTCACAAGGTGCTAGTGAACAAGCAGCTTCGGTTGAAGAAACTTCCGCTTC TTTGGAGGAAATGGGAGCCTCCATTGATCAAAATGCTGAAAATGCAAAACAAACAGATACCATTGCAACAAAGTCCGCAA AAGATGCCAAACAAGGTGGTGAAGCTGTGAAAAATACAGTCACAGCCATGAAAGAAATCGCTGATAAAATCTCGATCATT GAAGACATTGCTTACCAAACCAACTTACTGGCGTTAAATGCGGCAATCGAAGCTGCTCGTGCAGGAGAACATGGAAAAGG ATTTGCAGTCGTTGCCTCTGAAGTGCGAAAATTAGCAGAACGTTCACAAAAATCAGCAAATGAAATTGGTACTTTAGCGG GGAGTTCCGTTCAAATAGCGGAATCTGCTGGAAAACTCATTGAAGACATTGTTCCAGCAATCAACAAAACAGCTGATTTG GTGCAGGAAATCACGGCGGCAAGCCAAGAACAATCCTCTGGTGTGAATGAAGTGAATAAAGCTATGGGACAACTCGACCA AGTATCCCAACAATCAGCGAGTGCCTCAGAAGAACTGGCGGCTATTGCGGAAGAATTACAAGCCCAAGCGGAAAGACTCA TGTCTTCCATTAGTTTTTTCAAATTAGGGAAATTGTCTACGGTAACGAGCCATTCGGATCAAAAATCATCAAGGACTTCG CCTTCAAAACAACCAATCGCAAAAAAAGAAGTCATTGCTAGTAAAAAAGAAGGTTTGGATGATCATGGAAAATTCCAGAA ATACTAA
Upstream 100 bases:
>100_bases TTGGGTGATGGAAATGTAGCACTTATCATAGATGTTCCTTCTTTATTTGAAAGAACGATCACAGTTGAAAATCAAAAATT ATTGAATCACAGAGGTTGAT
Downstream 100 bases:
>100_bases GGAAGGGGCAAAACATGCAAGAGATTCAATATCTAACGTTTTTACTCTCCAATGAATTGTTTGGACTTGGGATTTTGTAC ATCAAAGAAATCATTGAATT
Product: putative methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: Chemotaxis regulator BdlA [H]
Number of amino acids: Translated: 908; Mature: 908
Protein sequence:
>908_residues MKSVSTNTKLIGYFLIGIIFTIWISLYSSGIFSNKETVNLNTEERIQKSDSISHLLRLSLSIHEDVTNLLVSVELQETLV AKTKYDIEKLNQSFDQVSSVFVNEDEKTKFQTVINEKNKYLESVSISLNQLGVAGNKKQKPNLNPEVSTHWKNYSSHLQE LQKIFLVSNLNEIKSKIETNTKDDFTIYIASAIFIVTSFVLLLFLMKQVNNPLKEAIQIKTALDSVSTNVMISDLNLDVV YMNKSIHKMFANSESDIQKQIRNFSLKNLMGSNIDGYHKDPSHQRKLLGTFTSEHRSSIRIGNREFNLIANPILTEKGER LGSVVEWADVTETNAHSRAVDRSQAMIEFSMDGTVITANENFLNLMGYSLAEIKGQHHRMFVESKESNSDEYKQFWMALN RGDYQTAEYKRLGKNGKEVWLQATYTPILDASGVPTKVIKFASDITENKIQTREFVSQIEAINKAQATIEFHLDGTIKTA NEIFLNTMGYSLTEIAGKHHRMFVEPNYANTEDYKQFWASLGRGEFQTAEYKRLGKGGKEVWLQATYNPILDLNGKPYKV IKFASDITEQKKLAIETTRIVDDLVVGLAALENGDLTQLITNHYEGGFAKLRDSFNNTSKKLVDIINDVRTNTDALVTAA DEVASTASTLSQGASEQAASVEETSASLEEMGASIDQNAENAKQTDTIATKSAKDAKQGGEAVKNTVTAMKEIADKISII EDIAYQTNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQKSANEIGTLAGSSVQIAESAGKLIEDIVPAINKTADL VQEITAASQEQSSGVNEVNKAMGQLDQVSQQSASASEELAAIAEELQAQAERLMSSISFFKLGKLSTVTSHSDQKSSRTS PSKQPIAKKEVIASKKEGLDDHGKFQKY
Sequences:
>Translated_908_residues MKSVSTNTKLIGYFLIGIIFTIWISLYSSGIFSNKETVNLNTEERIQKSDSISHLLRLSLSIHEDVTNLLVSVELQETLV AKTKYDIEKLNQSFDQVSSVFVNEDEKTKFQTVINEKNKYLESVSISLNQLGVAGNKKQKPNLNPEVSTHWKNYSSHLQE LQKIFLVSNLNEIKSKIETNTKDDFTIYIASAIFIVTSFVLLLFLMKQVNNPLKEAIQIKTALDSVSTNVMISDLNLDVV YMNKSIHKMFANSESDIQKQIRNFSLKNLMGSNIDGYHKDPSHQRKLLGTFTSEHRSSIRIGNREFNLIANPILTEKGER LGSVVEWADVTETNAHSRAVDRSQAMIEFSMDGTVITANENFLNLMGYSLAEIKGQHHRMFVESKESNSDEYKQFWMALN RGDYQTAEYKRLGKNGKEVWLQATYTPILDASGVPTKVIKFASDITENKIQTREFVSQIEAINKAQATIEFHLDGTIKTA NEIFLNTMGYSLTEIAGKHHRMFVEPNYANTEDYKQFWASLGRGEFQTAEYKRLGKGGKEVWLQATYNPILDLNGKPYKV IKFASDITEQKKLAIETTRIVDDLVVGLAALENGDLTQLITNHYEGGFAKLRDSFNNTSKKLVDIINDVRTNTDALVTAA DEVASTASTLSQGASEQAASVEETSASLEEMGASIDQNAENAKQTDTIATKSAKDAKQGGEAVKNTVTAMKEIADKISII EDIAYQTNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQKSANEIGTLAGSSVQIAESAGKLIEDIVPAINKTADL VQEITAASQEQSSGVNEVNKAMGQLDQVSQQSASASEELAAIAEELQAQAERLMSSISFFKLGKLSTVTSHSDQKSSRTS PSKQPIAKKEVIASKKEGLDDHGKFQKY >Mature_908_residues MKSVSTNTKLIGYFLIGIIFTIWISLYSSGIFSNKETVNLNTEERIQKSDSISHLLRLSLSIHEDVTNLLVSVELQETLV AKTKYDIEKLNQSFDQVSSVFVNEDEKTKFQTVINEKNKYLESVSISLNQLGVAGNKKQKPNLNPEVSTHWKNYSSHLQE LQKIFLVSNLNEIKSKIETNTKDDFTIYIASAIFIVTSFVLLLFLMKQVNNPLKEAIQIKTALDSVSTNVMISDLNLDVV YMNKSIHKMFANSESDIQKQIRNFSLKNLMGSNIDGYHKDPSHQRKLLGTFTSEHRSSIRIGNREFNLIANPILTEKGER LGSVVEWADVTETNAHSRAVDRSQAMIEFSMDGTVITANENFLNLMGYSLAEIKGQHHRMFVESKESNSDEYKQFWMALN RGDYQTAEYKRLGKNGKEVWLQATYTPILDASGVPTKVIKFASDITENKIQTREFVSQIEAINKAQATIEFHLDGTIKTA NEIFLNTMGYSLTEIAGKHHRMFVEPNYANTEDYKQFWASLGRGEFQTAEYKRLGKGGKEVWLQATYNPILDLNGKPYKV IKFASDITEQKKLAIETTRIVDDLVVGLAALENGDLTQLITNHYEGGFAKLRDSFNNTSKKLVDIINDVRTNTDALVTAA DEVASTASTLSQGASEQAASVEETSASLEEMGASIDQNAENAKQTDTIATKSAKDAKQGGEAVKNTVTAMKEIADKISII EDIAYQTNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQKSANEIGTLAGSSVQIAESAGKLIEDIVPAINKTADL VQEITAASQEQSSGVNEVNKAMGQLDQVSQQSASASEELAAIAEELQAQAERLMSSISFFKLGKLSTVTSHSDQKSSRTS PSKQPIAKKEVIASKKEGLDDHGKFQKY
Specific function: Essential for biofilm dispersion by sensing environmental cues. May be involved in sensing and transducing signals within cells, resulting in the modulation of c-di-GMP levels, swimming motility and adhesiveness of the bacterial cell surface [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI2367378, Length=314, Percent_Identity=40.1273885350318, Blast_Score=202, Evalue=8e-53, Organism=Escherichia coli, GI1788195, Length=315, Percent_Identity=39.6825396825397, Blast_Score=195, Evalue=1e-50, Organism=Escherichia coli, GI1788194, Length=316, Percent_Identity=37.3417721518987, Blast_Score=184, Evalue=2e-47, Organism=Escherichia coli, GI1787690, Length=293, Percent_Identity=38.9078498293515, Blast_Score=182, Evalue=9e-47, Organism=Escherichia coli, GI1789453, Length=250, Percent_Identity=35.6, Blast_Score=154, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013656 - InterPro: IPR013655 [H]
Pfam domain/function: PF00015 MCPsignal; PF08447 PAS_3; PF08448 PAS_4 [H]
EC number: NA
Molecular weight: Translated: 100562; Mature: 100562
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: PS50885 HAMP ; PS50113 PAC ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSVSTNTKLIGYFLIGIIFTIWISLYSSGIFSNKETVNLNTEERIQKSDSISHLLRLSL CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHH SIHEDVTNLLVSVELQETLVAKTKYDIEKLNQSFDQVSSVFVNEDEKTKFQTVINEKNKY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LESVSISLNQLGVAGNKKQKPNLNPEVSTHWKNYSSHLQELQKIFLVSNLNEIKSKIETN HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC TKDDFTIYIASAIFIVTSFVLLLFLMKQVNNPLKEAIQIKTALDSVSTNVMISDLNLDVV CCCCEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCEEEE YMNKSIHKMFANSESDIQKQIRNFSLKNLMGSNIDGYHKDPSHQRKLLGTFTSEHRSSIR EECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEE IGNREFNLIANPILTEKGERLGSVVEWADVTETNAHSRAVDRSQAMIEFSMDGTVITANE ECCCEEEEEECCHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEEECCCEEEEECC NFLNLMGYSLAEIKGQHHRMFVESKESNSDEYKQFWMALNRGDYQTAEYKRLGKNGKEVW CHHHHHHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEE LQATYTPILDASGVPTKVIKFASDITENKIQTREFVSQIEAINKAQATIEFHLDGTIKTA EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHH NEIFLNTMGYSLTEIAGKHHRMFVEPNYANTEDYKQFWASLGRGEFQTAEYKRLGKGGKE HHHHHHHCCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCE VWLQATYNPILDLNGKPYKVIKFASDITEQKKLAIETTRIVDDLVVGLAALENGDLTQLI EEEEEECCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH TNHYEGGFAKLRDSFNNTSKKLVDIINDVRTNTDALVTAADEVASTASTLSQGASEQAAS HHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHHHHHCCCHHHHHH VEETSASLEEMGASIDQNAENAKQTDTIATKSAKDAKQGGEAVKNTVTAMKEIADKISII HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDIAYQTNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQKSANEIGTLAGSSVQIA HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH ESAGKLIEDIVPAINKTADLVQEITAASQEQSSGVNEVNKAMGQLDQVSQQSASASEELA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH AIAEELQAQAERLMSSISFFKLGKLSTVTSHSDQKSSRTSPSKQPIAKKEVIASKKEGLD HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC DHGKFQKY CCCCCCCC >Mature Secondary Structure MKSVSTNTKLIGYFLIGIIFTIWISLYSSGIFSNKETVNLNTEERIQKSDSISHLLRLSL CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHH SIHEDVTNLLVSVELQETLVAKTKYDIEKLNQSFDQVSSVFVNEDEKTKFQTVINEKNKY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LESVSISLNQLGVAGNKKQKPNLNPEVSTHWKNYSSHLQELQKIFLVSNLNEIKSKIETN HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC TKDDFTIYIASAIFIVTSFVLLLFLMKQVNNPLKEAIQIKTALDSVSTNVMISDLNLDVV CCCCEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEECCEEEE YMNKSIHKMFANSESDIQKQIRNFSLKNLMGSNIDGYHKDPSHQRKLLGTFTSEHRSSIR EECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEE IGNREFNLIANPILTEKGERLGSVVEWADVTETNAHSRAVDRSQAMIEFSMDGTVITANE ECCCEEEEEECCHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEEECCCEEEEECC NFLNLMGYSLAEIKGQHHRMFVESKESNSDEYKQFWMALNRGDYQTAEYKRLGKNGKEVW CHHHHHHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEE LQATYTPILDASGVPTKVIKFASDITENKIQTREFVSQIEAINKAQATIEFHLDGTIKTA EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHH NEIFLNTMGYSLTEIAGKHHRMFVEPNYANTEDYKQFWASLGRGEFQTAEYKRLGKGGKE HHHHHHHCCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCE VWLQATYNPILDLNGKPYKVIKFASDITEQKKLAIETTRIVDDLVVGLAALENGDLTQLI EEEEEECCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH TNHYEGGFAKLRDSFNNTSKKLVDIINDVRTNTDALVTAADEVASTASTLSQGASEQAAS HHHCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHHHHHCCCHHHHHH VEETSASLEEMGASIDQNAENAKQTDTIATKSAKDAKQGGEAVKNTVTAMKEIADKISII HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDIAYQTNLLALNAAIEAARAGEHGKGFAVVASEVRKLAERSQKSANEIGTLAGSSVQIA HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH ESAGKLIEDIVPAINKTADLVQEITAASQEQSSGVNEVNKAMGQLDQVSQQSASASEELA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH AIAEELQAQAERLMSSISFFKLGKLSTVTSHSDQKSSRTSPSKQPIAKKEVIASKKEGLD HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC DHGKFQKY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]