| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is rsbU [H]
Identifier: 183220962
GI number: 183220962
Start: 1645608
End: 1648355
Strand: Direct
Name: rsbU [H]
Synonym: LEPBI_I1575
Alternate gene names: 183220962
Gene position: 1645608-1648355 (Clockwise)
Preceding gene: 183220961
Following gene: 183220963
Centisome position: 45.72
GC content: 39.67
Gene sequence:
>2748_bases TTGAAACCAAATTCCCTTCCGCCAATTATCTTAAAAAATCAAGATGGCGGATTTTACCTTTCCTCCTCCTCTGAACTTGA CGATTTATATCATTTTATCTTAGGCCAGGCAAAACGTTTTGTTTCGGCAAAGTCGGCGGCATTTTATTTACGAAATGAAA GGGGAAATTTAAGTCGGATTGGTTTGATTTCCGACAAAAACAATGCGGGCCTCATCGCCAAACATGTGTTCAAGTCAAAA AAGAGTATCCTTGTCAAAAAAGGAACTCATTTAAACCCAGAAAGTGCACCTGCTTCCGAGTCGTACATTGCCTGTTATCT GGGAGATGAAATTGGGGACATGTCCCTTGGAGTGCTTGTCCTCGAAGGGATCAAACATTTCCAAAATTTTTCAGAACAAG ATTTAGATCTCATCAATTATTTTAGTGCCAATTTGAATGCTCTTTTTAAAGACACGGTTTTTTCGGACAAGGAACCACAG TTTTTTAATTCGCTTACCACGTCAGTATTACTTTTAATTGATAACGCCAACATTCATAATAACAACAACCGACTCCAATA TTTTTTGGAAGAGATCATTCGAGTTGCGGTTCTCATCAATACCAGCGTGGATTTGGAACATGTATTGGTTATGGTAATGG AATCTGCCAAATCTGTCTTTCGAACAGAAGCTAGTTCCTTGTTATTGTTAGATGAAAAAAAAGAGTATTTGGTTTTTCAT ACAGTAACTGGCGAAAAAAGAGAAGAAGTATCCAAAATCAAAGTTCCCGTTGGGCAAGGGATTGCAGGTACGGTTGCTGT CACAAAACAACCAATGATCATTAACGATGCACAGAATGACGACAGAGTGTTTCGTGATGTTGACAAAGCATCCAATTTCA TCACAAGAAATATTTTGGCAAGTCCGCTCATTGTAGGAGATGAAGTGATCGGTGTGATTGAAGCCATCAATACAATCGAT CGGAATAATTTTAGCCAAGACGATATCGATACATTTTTATCCTTTTCTAGTGCTTGTGCAGTTGCCATCCAAAAGACAAG ATTACTCGATAATTTGAATGTGACGAACTTAGAACTCAAACAGAAGTTGAGTACACTCGAATCCATTTTTGATTTAGGCC AGGCAGTCCTTGAGTCCCACGATGAACTAGGTCTCATGTCAAAAACCCTTAGCATTCTTACGAAAGAATTGTCATGCGAA GATGCTGGTATGGTCATCATTGAGGAAAAAAACAAAAACAGAATCCAAGTTTATGCAAGGCAACTTGGGATTGTTCGGGA ATCTTTTTTTCCTATGTTTGAAAGCCGATTGTTTTTAAGCCTTATGGAATCGGGAAATCCAAGGATGGCAGTTGTCACTC CACAACTCGAAGAATCCTTTTTGGAGTTAGAGTTTTACACCTTAAAGAAAAATTTTCTCATTTTACCCATTGCCCCAAGG GGAGGGAACTTACGAGCGGCTCTTTACGTGAGTGGGAAACATTCCGCTCATTCCTTTAATGAAACTGACCTTCGGATGCT AAAAACTCTTTCCTCTCCACTCGCAAAAGCGTACGAAAATTTAAGGCTCAACCAAGAGATCATCACCAAAAAATCGATCG AAAAAGAAATTGAGATCACTCGTAAAATCCAAAACAATATTTTACCCAATGGACTCATTCAATCTCCCTTATTTGATTTA GGAGTGATGTCTGTTGCCGCCAAAGAAGTGTCAGGTGATTTTTATGATTTTCATGCATTTGGTGATGAACAATTTTCGTT TCTAGTCGCGGATGTATCGGGAAAAAGTTTACCAGCTGCCATTTTTATGGCGATGTCAAGTTCTATCATCCGCACACTTT CACGAACCACCGATTTATCTCCCTCTGAACTTTTGTTTCGCGCCAACCAATTGATCTATGAAGATAGCCAATCGGGTATG TTTGTGACTTTATTTCTTGTGAACTACCAAAGGAAAACTCGCACCTTAAAATTTGCTTCCGCCGGTCATAATGACCAAAT TTGGATCCGTGGTGATGGAAGTTATGAACTCCTAAAGGGCAAAGGTGCACCACTGGGTGTAGTCCCACACACCAATTACC AGGGTGGGGAAATCCAATTGGAACCAGGTGATATTTTGGTATTTTATACGGACGGAGCCATCGAGGAAAAAAGCCCAGAT GGGGAAGAATACGGGCTCGACCGTTTCATTGAATTCATCATCCAAAGAAGGGATGCGGCCTCCCAAGACATCGTGGAAGC AGTGTACGATGACATTCGATCGTTCTCTAACTCGGAAGAACAATACGATGATTTTACAGTGATGGTTCTCAAATTTGCGG AGGTGACAAGTTTCGAAATGGTAAAATCCTTTGATGCAAGCCCCAATGAAATTCCGAAACTCCGAGATTTTATTTCGGAA CATTTAGAGTCAAAAATCACAAAACCTTTTGCATTTGATGACATCTTAATATCTTTGGATGAAGCAGCGACCAATATTGT CATGCACAGTTACAAAGACACAGAGATTTTGAATCCAAAGTTTGAATGTAAATTCGAACTCATTGGAGATAAGTTAAAAA TTGTACTCGTTGACGAGGGAAAACCCTTCGACAGAAAAAAAGTTCCGAAACCATCCGTTGAAGCCAATTTGAAAGGCGAA CGGAAGGGGGGATTTGGAGTTTATCTCATGGAAACCCTGATGGACAAGGTTTCCTATGAATACAATGGGAAACAAAACAT AACATATTTGGAGAAAACAATCGTATGA
Upstream 100 bases:
>100_bases CGCGATGAACTGATGTCTGCCTTCGATAAAATCAAATCCCTCGAAGATGCCAATCGTAAACTGAGAGAAGAATCATTAAA GTTTAGCAAAGATTAAACCA
Downstream 100 bases:
>100_bases ACGAAGATAAAATCGGAATCCGTTCGGAAGAAATCGGAAACAAAATGATTGTACATGTCCAAGGCAATTTGGATGTTCAC AACACACACAAAATCGAAAA
Product: putative phosphodiesterase or phosphatase
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 915; Mature: 915
Protein sequence:
>915_residues MKPNSLPPIILKNQDGGFYLSSSSELDDLYHFILGQAKRFVSAKSAAFYLRNERGNLSRIGLISDKNNAGLIAKHVFKSK KSILVKKGTHLNPESAPASESYIACYLGDEIGDMSLGVLVLEGIKHFQNFSEQDLDLINYFSANLNALFKDTVFSDKEPQ FFNSLTTSVLLLIDNANIHNNNNRLQYFLEEIIRVAVLINTSVDLEHVLVMVMESAKSVFRTEASSLLLLDEKKEYLVFH TVTGEKREEVSKIKVPVGQGIAGTVAVTKQPMIINDAQNDDRVFRDVDKASNFITRNILASPLIVGDEVIGVIEAINTID RNNFSQDDIDTFLSFSSACAVAIQKTRLLDNLNVTNLELKQKLSTLESIFDLGQAVLESHDELGLMSKTLSILTKELSCE DAGMVIIEEKNKNRIQVYARQLGIVRESFFPMFESRLFLSLMESGNPRMAVVTPQLEESFLELEFYTLKKNFLILPIAPR GGNLRAALYVSGKHSAHSFNETDLRMLKTLSSPLAKAYENLRLNQEIITKKSIEKEIEITRKIQNNILPNGLIQSPLFDL GVMSVAAKEVSGDFYDFHAFGDEQFSFLVADVSGKSLPAAIFMAMSSSIIRTLSRTTDLSPSELLFRANQLIYEDSQSGM FVTLFLVNYQRKTRTLKFASAGHNDQIWIRGDGSYELLKGKGAPLGVVPHTNYQGGEIQLEPGDILVFYTDGAIEEKSPD GEEYGLDRFIEFIIQRRDAASQDIVEAVYDDIRSFSNSEEQYDDFTVMVLKFAEVTSFEMVKSFDASPNEIPKLRDFISE HLESKITKPFAFDDILISLDEAATNIVMHSYKDTEILNPKFECKFELIGDKLKIVLVDEGKPFDRKKVPKPSVEANLKGE RKGGFGVYLMETLMDKVSYEYNGKQNITYLEKTIV
Sequences:
>Translated_915_residues MKPNSLPPIILKNQDGGFYLSSSSELDDLYHFILGQAKRFVSAKSAAFYLRNERGNLSRIGLISDKNNAGLIAKHVFKSK KSILVKKGTHLNPESAPASESYIACYLGDEIGDMSLGVLVLEGIKHFQNFSEQDLDLINYFSANLNALFKDTVFSDKEPQ FFNSLTTSVLLLIDNANIHNNNNRLQYFLEEIIRVAVLINTSVDLEHVLVMVMESAKSVFRTEASSLLLLDEKKEYLVFH TVTGEKREEVSKIKVPVGQGIAGTVAVTKQPMIINDAQNDDRVFRDVDKASNFITRNILASPLIVGDEVIGVIEAINTID RNNFSQDDIDTFLSFSSACAVAIQKTRLLDNLNVTNLELKQKLSTLESIFDLGQAVLESHDELGLMSKTLSILTKELSCE DAGMVIIEEKNKNRIQVYARQLGIVRESFFPMFESRLFLSLMESGNPRMAVVTPQLEESFLELEFYTLKKNFLILPIAPR GGNLRAALYVSGKHSAHSFNETDLRMLKTLSSPLAKAYENLRLNQEIITKKSIEKEIEITRKIQNNILPNGLIQSPLFDL GVMSVAAKEVSGDFYDFHAFGDEQFSFLVADVSGKSLPAAIFMAMSSSIIRTLSRTTDLSPSELLFRANQLIYEDSQSGM FVTLFLVNYQRKTRTLKFASAGHNDQIWIRGDGSYELLKGKGAPLGVVPHTNYQGGEIQLEPGDILVFYTDGAIEEKSPD GEEYGLDRFIEFIIQRRDAASQDIVEAVYDDIRSFSNSEEQYDDFTVMVLKFAEVTSFEMVKSFDASPNEIPKLRDFISE HLESKITKPFAFDDILISLDEAATNIVMHSYKDTEILNPKFECKFELIGDKLKIVLVDEGKPFDRKKVPKPSVEANLKGE RKGGFGVYLMETLMDKVSYEYNGKQNITYLEKTIV >Mature_915_residues MKPNSLPPIILKNQDGGFYLSSSSELDDLYHFILGQAKRFVSAKSAAFYLRNERGNLSRIGLISDKNNAGLIAKHVFKSK KSILVKKGTHLNPESAPASESYIACYLGDEIGDMSLGVLVLEGIKHFQNFSEQDLDLINYFSANLNALFKDTVFSDKEPQ FFNSLTTSVLLLIDNANIHNNNNRLQYFLEEIIRVAVLINTSVDLEHVLVMVMESAKSVFRTEASSLLLLDEKKEYLVFH TVTGEKREEVSKIKVPVGQGIAGTVAVTKQPMIINDAQNDDRVFRDVDKASNFITRNILASPLIVGDEVIGVIEAINTID RNNFSQDDIDTFLSFSSACAVAIQKTRLLDNLNVTNLELKQKLSTLESIFDLGQAVLESHDELGLMSKTLSILTKELSCE DAGMVIIEEKNKNRIQVYARQLGIVRESFFPMFESRLFLSLMESGNPRMAVVTPQLEESFLELEFYTLKKNFLILPIAPR GGNLRAALYVSGKHSAHSFNETDLRMLKTLSSPLAKAYENLRLNQEIITKKSIEKEIEITRKIQNNILPNGLIQSPLFDL GVMSVAAKEVSGDFYDFHAFGDEQFSFLVADVSGKSLPAAIFMAMSSSIIRTLSRTTDLSPSELLFRANQLIYEDSQSGM FVTLFLVNYQRKTRTLKFASAGHNDQIWIRGDGSYELLKGKGAPLGVVPHTNYQGGEIQLEPGDILVFYTDGAIEEKSPD GEEYGLDRFIEFIIQRRDAASQDIVEAVYDDIRSFSNSEEQYDDFTVMVLKFAEVTSFEMVKSFDASPNEIPKLRDFISE HLESKITKPFAFDDILISLDEAATNIVMHSYKDTEILNPKFECKFELIGDKLKIVLVDEGKPFDRKKVPKPSVEANLKGE RKGGFGVYLMETLMDKVSYEYNGKQNITYLEKTIV
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
Organism=Homo sapiens, GI194595488, Length=201, Percent_Identity=28.8557213930348, Blast_Score=81, Evalue=5e-15, Organism=Homo sapiens, GI5729972, Length=346, Percent_Identity=25.1445086705202, Blast_Score=81, Evalue=6e-15, Organism=Homo sapiens, GI4505657, Length=174, Percent_Identity=33.9080459770115, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI226246591, Length=174, Percent_Identity=33.9080459770115, Blast_Score=78, Evalue=4e-14, Organism=Homo sapiens, GI219802706, Length=174, Percent_Identity=33.9080459770115, Blast_Score=78, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193202333, Length=205, Percent_Identity=28.2926829268293, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI161076955, Length=173, Percent_Identity=27.1676300578035, Blast_Score=70, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076953, Length=173, Percent_Identity=27.1676300578035, Blast_Score=70, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 102764; Mature: 102764
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPNSLPPIILKNQDGGFYLSSSSELDDLYHFILGQAKRFVSAKSAAFYLRNERGNLSRI CCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEE GLISDKNNAGLIAKHVFKSKKSILVKKGTHLNPESAPASESYIACYLGDEIGDMSLGVLV EEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH LEGIKHFQNFSEQDLDLINYFSANLNALFKDTVFSDKEPQFFNSLTTSVLLLIDNANIHN HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHEEEEEEECCCEEC NNNRLQYFLEEIIRVAVLINTSVDLEHVLVMVMESAKSVFRTEASSLLLLDEKKEYLVFH CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEE TVTGEKREEVSKIKVPVGQGIAGTVAVTKQPMIINDAQNDDRVFRDVDKASNFITRNILA ECCCCHHHHHHHEECCCCCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH SPLIVGDEVIGVIEAINTIDRNNFSQDDIDTFLSFSSACAVAIQKTRLLDNLNVTNLELK CCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH QKLSTLESIFDLGQAVLESHDELGLMSKTLSILTKELSCEDAGMVIIEEKNKNRIQVYAR HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH QLGIVRESFFPMFESRLFLSLMESGNPRMAVVTPQLEESFLELEFYTLKKNFLILPIAPR HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHEEEEEEEECCEEEEEECCC GGNLRAALYVSGKHSAHSFNETDLRMLKTLSSPLAKAYENLRLNQEIITKKSIEKEIEIT CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH RKIQNNILPNGLIQSPLFDLGVMSVAAKEVSGDFYDFHAFGDEQFSFLVADVSGKSLPAA HHHHHCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCHHH IFMAMSSSIIRTLSRTTDLSPSELLFRANQLIYEDSQSGMFVTLFLVNYQRKTRTLKFAS HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCEEEEEEEEECHHHHCEEEEEC AGHNDQIWIRGDGSYELLKGKGAPLGVVPHTNYQGGEIQLEPGDILVFYTDGAIEEKSPD CCCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCC GEEYGLDRFIEFIIQRRDAASQDIVEAVYDDIRSFSNSEEQYDDFTVMVLKFAEVTSFEM CHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEHHHHHHHHHH VKSFDASPNEIPKLRDFISEHLESKITKPFAFDDILISLDEAATNIVMHSYKDTEILNPK HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHEECCCCCCCCCCC FECKFELIGDKLKIVLVDEGKPFDRKKVPKPSVEANLKGERKGGFGVYLMETLMDKVSYE CEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC YNGKQNITYLEKTIV CCCCCCCCHHHHHCC >Mature Secondary Structure MKPNSLPPIILKNQDGGFYLSSSSELDDLYHFILGQAKRFVSAKSAAFYLRNERGNLSRI CCCCCCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEE GLISDKNNAGLIAKHVFKSKKSILVKKGTHLNPESAPASESYIACYLGDEIGDMSLGVLV EEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH LEGIKHFQNFSEQDLDLINYFSANLNALFKDTVFSDKEPQFFNSLTTSVLLLIDNANIHN HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHEEEEEEECCCEEC NNNRLQYFLEEIIRVAVLINTSVDLEHVLVMVMESAKSVFRTEASSLLLLDEKKEYLVFH CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEE TVTGEKREEVSKIKVPVGQGIAGTVAVTKQPMIINDAQNDDRVFRDVDKASNFITRNILA ECCCCHHHHHHHEECCCCCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH SPLIVGDEVIGVIEAINTIDRNNFSQDDIDTFLSFSSACAVAIQKTRLLDNLNVTNLELK CCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH QKLSTLESIFDLGQAVLESHDELGLMSKTLSILTKELSCEDAGMVIIEEKNKNRIQVYAR HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH QLGIVRESFFPMFESRLFLSLMESGNPRMAVVTPQLEESFLELEFYTLKKNFLILPIAPR HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHEEEEEEEECCEEEEEECCC GGNLRAALYVSGKHSAHSFNETDLRMLKTLSSPLAKAYENLRLNQEIITKKSIEKEIEIT CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH RKIQNNILPNGLIQSPLFDLGVMSVAAKEVSGDFYDFHAFGDEQFSFLVADVSGKSLPAA HHHHHCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCHHH IFMAMSSSIIRTLSRTTDLSPSELLFRANQLIYEDSQSGMFVTLFLVNYQRKTRTLKFAS HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCEEEEEEEEECHHHHCEEEEEC AGHNDQIWIRGDGSYELLKGKGAPLGVVPHTNYQGGEIQLEPGDILVFYTDGAIEEKSPD CCCCCEEEEEECCCEEEEECCCCCEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCC GEEYGLDRFIEFIIQRRDAASQDIVEAVYDDIRSFSNSEEQYDDFTVMVLKFAEVTSFEM CHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEHHHHHHHHHH VKSFDASPNEIPKLRDFISEHLESKITKPFAFDDILISLDEAATNIVMHSYKDTEILNPK HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHEECCCCCCCCCCC FECKFELIGDKLKIVLVDEGKPFDRKKVPKPSVEANLKGERKGGFGVYLMETLMDKVSYE CEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC YNGKQNITYLEKTIV CCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]