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The map label for this gene is nifU [C]

Identifier: 183220437

GI number: 183220437

Start: 1075550

End: 1076344

Strand: Direct

Name: nifU [C]

Synonym: LEPBI_I1034

Alternate gene names: 183220437

Gene position: 1075550-1076344 (Clockwise)

Preceding gene: 183220436

Following gene: 183220438

Centisome position: 29.88

GC content: 44.65

Gene sequence:

>795_bases
ATGGCAGTAATGGACTTTGCTCGCTACAAAGAAATCAACGACCAAAGGATGAATTACCGTGAGATGGAAGACGCAACCGT
CGTCTCCTATTACCGCAACACAGGTTGCGGGGACGGATACCGCATCTATTTAAAGTTAAATGAAAGCCTTGTTGTAGAAG
ACGCCAGTTACACCACAACAGGCTGTGGGTTTGGGATTGTGGCACTTGCCATGGCAACTGAATACGCCAAAGGTAAATCC
ATCACGGATCTCAAAAACCTAACACCAGAGACTCTCGAAACACTTTTTGAATTTCCAGAACGTAGGAAAAACTACCCAGA
ATCGGCTGTGGCTGCTCTCAAAAAAGCAGTTGAAGATTATGAATCAGGCCAAGGGGTTCCCAAAGAAAACCGAATCACCA
AAGCACAAACCATGGAACTCCTTCACACCCAAGGGCATTTGCGAGATGCAAAATTATCCAGTGTGATGCTCGAGAAAGAA
AAATTGGATGGCGTTGATTTTAGTGGAGCAGACCTCCACAACGCCTTCCTGCAAAACTCTAGTTTTGTCGGTGCGAACTT
TTCTGGAGCAAACTTAAAAGCTTCCTTCTTTAATGGAGCCGATTTACGGAACGCCAATTTTCGAGGCGCTGATTTACGTT
TTGCCAAACTTGCGTCCGCTAAAATCGAAGATGCTGATTTCACAGATGCCATCTATGACATTGGAACCCGAGTGGACCAT
AGCCAAATGTACATCTTTGATGTGATGAAAAAAGCAGGCAAAGACCTTTACCTCAAAAAAGAGGATGGGGAATGA

Upstream 100 bases:

>100_bases
GACACAACAGGCCGCGTAGACAAGTTCAAGAAAAAATACAAAATGAAATAAGAGGCTTTTGCCTCTTTCGGACCGTCTAA
GTTACAACAGGAGATCACTC

Downstream 100 bases:

>100_bases
AACCTGGCGATAAGGCGAAACTCACCAAACAAACCTTCCTTCACCAAGGAATTTTCATTTTTACAGGTTCCACTGTGGAA
ATCAAAGAAATCCAAAGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NifU Protein; Nitrogen-Fixing NifU Domain Protein; Nitrogen-Fixing NifU-Like Protein; FeS Cluster Assembly Scaffold Protein NifU

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MAVMDFARYKEINDQRMNYREMEDATVVSYYRNTGCGDGYRIYLKLNESLVVEDASYTTTGCGFGIVALAMATEYAKGKS
ITDLKNLTPETLETLFEFPERRKNYPESAVAALKKAVEDYESGQGVPKENRITKAQTMELLHTQGHLRDAKLSSVMLEKE
KLDGVDFSGADLHNAFLQNSSFVGANFSGANLKASFFNGADLRNANFRGADLRFAKLASAKIEDADFTDAIYDIGTRVDH
SQMYIFDVMKKAGKDLYLKKEDGE

Sequences:

>Translated_264_residues
MAVMDFARYKEINDQRMNYREMEDATVVSYYRNTGCGDGYRIYLKLNESLVVEDASYTTTGCGFGIVALAMATEYAKGKS
ITDLKNLTPETLETLFEFPERRKNYPESAVAALKKAVEDYESGQGVPKENRITKAQTMELLHTQGHLRDAKLSSVMLEKE
KLDGVDFSGADLHNAFLQNSSFVGANFSGANLKASFFNGADLRNANFRGADLRFAKLASAKIEDADFTDAIYDIGTRVDH
SQMYIFDVMKKAGKDLYLKKEDGE
>Mature_263_residues
AVMDFARYKEINDQRMNYREMEDATVVSYYRNTGCGDGYRIYLKLNESLVVEDASYTTTGCGFGIVALAMATEYAKGKSI
TDLKNLTPETLETLFEFPERRKNYPESAVAALKKAVEDYESGQGVPKENRITKAQTMELLHTQGHLRDAKLSSVMLEKEK
LDGVDFSGADLHNAFLQNSSFVGANFSGANLKASFFNGADLRNANFRGADLRFAKLASAKIEDADFTDAIYDIGTRVDHS
QMYIFDVMKKAGKDLYLKKEDGE

Specific function: May Be Involved In The Formation Or Repair Of [Fe-S] Clusters Present In Iron-Sulfur Proteins (Potential). [C]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29517; Mature: 29386

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVMDFARYKEINDQRMNYREMEDATVVSYYRNTGCGDGYRIYLKLNESLVVEDASYTTT
CCCHHHHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCCCEEEEEEECCEEEEECCCCCCC
GCGFGIVALAMATEYAKGKSITDLKNLTPETLETLFEFPERRKNYPESAVAALKKAVEDY
CCHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHH
ESGQGVPKENRITKAQTMELLHTQGHLRDAKLSSVMLEKEKLDGVDFSGADLHNAFLQNS
HCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
SFVGANFSGANLKASFFNGADLRNANFRGADLRFAKLASAKIEDADFTDAIYDIGTRVDH
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCC
SQMYIFDVMKKAGKDLYLKKEDGE
CHHHHHHHHHHCCCCEEEECCCCC
>Mature Secondary Structure 
AVMDFARYKEINDQRMNYREMEDATVVSYYRNTGCGDGYRIYLKLNESLVVEDASYTTT
CCHHHHHHHHCCHHHCCHHHHCCHHHHHHHHCCCCCCCEEEEEEECCEEEEECCCCCCC
GCGFGIVALAMATEYAKGKSITDLKNLTPETLETLFEFPERRKNYPESAVAALKKAVEDY
CCHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHH
ESGQGVPKENRITKAQTMELLHTQGHLRDAKLSSVMLEKEKLDGVDFSGADLHNAFLQNS
HCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
SFVGANFSGANLKASFFNGADLRNANFRGADLRFAKLASAKIEDADFTDAIYDIGTRVDH
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCC
SQMYIFDVMKKAGKDLYLKKEDGE
CHHHHHHHHHHCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA