Click here to switch to the map view.

The map label for this gene is ygdH [C]

Identifier: 183220422

GI number: 183220422

Start: 1063791

End: 1064555

Strand: Direct

Name: ygdH [C]

Synonym: LEPBI_I1019

Alternate gene names: 183220422

Gene position: 1063791-1064555 (Clockwise)

Preceding gene: 183220420

Following gene: 183220423

Centisome position: 29.55

GC content: 46.41

Gene sequence:

>765_bases
ATGAAAGATTTAGCCTTTGAGAATCAAAGTTTTTTATGGGGAAATGAGGCAGGTCCCATTCGGATCCTTTCGGAATACCT
CCACCCCAAGGCAGAACTGAAAGCGCACGGGATCACGGACACCATCGTTGTCTTTGGATCAGCCAGGATTCCTTCCCCCG
AAGCGAAAAAAGTCGGAGGTTATTCCCCTCTGAATGAACTGAGCCAGTATTATGAAGAAGCAAGGGAGGTCTCACGTTTG
ATCAGTGAGTGGGCCGATGTTTTAAAACAAGAGATCCCCGATCGTAATTTGCATATCTGTACGGGTGGAGGGCCTGGGAT
CATGGAAGCGGGGAACCGCGGTGCCAAAGAAGCCGGGTCCAAATCGGTGGCTCTGAACATCGTGCTTCCGCATGAACAAA
ACCCAAACCCGTATGTGAACCCAGAGCTGACATTTGAGTTTCATTATTTTTTTATGCGGAAACTTTGGTTTATGAAGACC
TGTCGTGGCATGATTGCCTTCCCTGGTGGGTTCGGAACCTTTGATGAGTTGTTTGAAACCTTAACTCTCGTCCAAACAGG
GAAAAAAAGTCCGATCCCCATTCTCCTATATGGGAAAAAATTTTGGTCAGAGGTCATCAATTTCAAAAAATTAGCGGAGA
TGCGTCTCATCTCGGAAGAGGATCTCCATTTATTTGGTTATGCGGATTCACCCATCGAGGCGCTCCGATTCTTTCAGGAA
AAGATTCGTTTCGAATTGACCCATTCTGAGGGTACAAAAACATAG

Upstream 100 bases:

>100_bases
TGTTTCCTGGATAGGGAGATGTTCTAAGGAAACAGTGAGTTCGTAAGTTTTTTGGAATTTCCGCATTTTTAGTACCAATC
GGTCGATCTATGATAACAAG

Downstream 100 bases:

>100_bases
CGAAACAAGGTAATAATTATGGCTAGAACATGTGTAGTAACCGGAAAAGGAACAACGGCAGGGAACAACGTATCCCATTC
TCATAAAAAGAACCGCCGTA

Product: putative Rossmann fold nucleotide-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKDLAFENQSFLWGNEAGPIRILSEYLHPKAELKAHGITDTIVVFGSARIPSPEAKKVGGYSPLNELSQYYEEAREVSRL
ISEWADVLKQEIPDRNLHICTGGGPGIMEAGNRGAKEAGSKSVALNIVLPHEQNPNPYVNPELTFEFHYFFMRKLWFMKT
CRGMIAFPGGFGTFDELFETLTLVQTGKKSPIPILLYGKKFWSEVINFKKLAEMRLISEEDLHLFGYADSPIEALRFFQE
KIRFELTHSEGTKT

Sequences:

>Translated_254_residues
MKDLAFENQSFLWGNEAGPIRILSEYLHPKAELKAHGITDTIVVFGSARIPSPEAKKVGGYSPLNELSQYYEEAREVSRL
ISEWADVLKQEIPDRNLHICTGGGPGIMEAGNRGAKEAGSKSVALNIVLPHEQNPNPYVNPELTFEFHYFFMRKLWFMKT
CRGMIAFPGGFGTFDELFETLTLVQTGKKSPIPILLYGKKFWSEVINFKKLAEMRLISEEDLHLFGYADSPIEALRFFQE
KIRFELTHSEGTKT
>Mature_254_residues
MKDLAFENQSFLWGNEAGPIRILSEYLHPKAELKAHGITDTIVVFGSARIPSPEAKKVGGYSPLNELSQYYEEAREVSRL
ISEWADVLKQEIPDRNLHICTGGGPGIMEAGNRGAKEAGSKSVALNIVLPHEQNPNPYVNPELTFEFHYFFMRKLWFMKT
CRGMIAFPGGFGTFDELFETLTLVQTGKKSPIPILLYGKKFWSEVINFKKLAEMRLISEEDLHLFGYADSPIEALRFFQE
KIRFELTHSEGTKT

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28824; Mature: 28824

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLAFENQSFLWGNEAGPIRILSEYLHPKAELKAHGITDTIVVFGSARIPSPEAKKVGG
CCCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCHHHCCC
YSPLNELSQYYEEAREVSRLISEWADVLKQEIPDRNLHICTGGGPGIMEAGNRGAKEAGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCCHHCCC
KSVALNIVLPHEQNPNPYVNPELTFEFHYFFMRKLWFMKTCRGMIAFPGGFGTFDELFET
CEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHH
LTLVQTGKKSPIPILLYGKKFWSEVINFKKLAEMRLISEEDLHLFGYADSPIEALRFFQE
HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
KIRFELTHSEGTKT
HHHEEEECCCCCCC
>Mature Secondary Structure
MKDLAFENQSFLWGNEAGPIRILSEYLHPKAELKAHGITDTIVVFGSARIPSPEAKKVGG
CCCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHCCCCEEEEEEECCCCCCCCHHHCCC
YSPLNELSQYYEEAREVSRLISEWADVLKQEIPDRNLHICTGGGPGIMEAGNRGAKEAGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCCCCHHCCC
KSVALNIVLPHEQNPNPYVNPELTFEFHYFFMRKLWFMKTCRGMIAFPGGFGTFDELFET
CEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHH
LTLVQTGKKSPIPILLYGKKFWSEVINFKKLAEMRLISEEDLHLFGYADSPIEALRFFQE
HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
KIRFELTHSEGTKT
HHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA