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The map label for this gene is fliA [H]

Identifier: 183220350

GI number: 183220350

Start: 978240

End: 979040

Strand: Direct

Name: fliA [H]

Synonym: LEPBI_I0946

Alternate gene names: 183220350

Gene position: 978240-979040 (Clockwise)

Preceding gene: 183220349

Following gene: 183220351

Centisome position: 27.18

GC content: 42.2

Gene sequence:

>801_bases
ATGTCAAGATTGCTAGACAAATACAATCAGTTTGATGAGACAGATCTTTGGAAACAATACCGTGTCAAAAAGGACGCGGA
AATCCGAAGTTATCTTGTTGAAAAATATTCACCTCTCGTCAAACACGTGGCCGGGCGGATTGCGATCGGAATGCCACAAA
ATGTGGAATTTGAAGACCTCGTCAGTTATGGCGTCTTTGGTCTGTTAGATGCCATTGAAAAGTTTGACCCTTCCCGCGAA
ATTAAATTCAAAACCTATGCGATGACTCGTATCCGTGGGTCCATCTTTGATGAACTCCGCAGTGTGGATTGGATCCCAAG
GTCCATCCGCCAAAAGGCAAAACAACTCGAAAACATCATTGCCATGCTTGAGAACAAAGAGGGCAAAAAAGTCGATGATG
AAGAGATTGCCAAAGAACTTGGCGTCTCCATGGAAGAATACAATTCCCTCCTTGCCAAACTCTCTGGAACCTCACTTGTT
TCACTGAATGACATTTGGTTTCTCGGAGATGAGAACGATGAAGTTTCCTTTATGGAAACATTAGAGTCTCCGATGAATAT
GAACCCAGACAATATCATCGAAAAAGAAGAAATCAAAAACGTCATTGTCGAAGCCATCCAGTCATTGCCTGAAAAGGAAA
AAAAAGTCATCGTCCTCTATTACTATGAAGACCTGACCTTAAAAGAGATTGGGGAAGTATTGGAAGTCACAGAATCACGT
ATCTCTCAACTCCACACCAAAGCTGTCGCAAGGCTTCGTAGCAAACTTTCCAAAGTCAAATCAGCGATCCAAAAAAGGTA
A

Upstream 100 bases:

>100_bases
TGAAAAATTACTGTTTTTAGAGGACATAAGAAAAAATCCTCTTGTAATTTTCATTTCTTTACGATTTATAAAGTAAAGAG
ATCCCGTACCCTGGTTCCCA

Downstream 100 bases:

>100_bases
TCGGCCATGTCTCTCACGGAATTTCTTACAGAGGAACTAAAAGAGTTCGATCGTAAGGAAAAAGAACAAGTGGAAGTCAT
TGCCGATACCATCGAAGAGT

Product: RNA polymerase sigma factor WhiG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSRLLDKYNQFDETDLWKQYRVKKDAEIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFEDLVSYGVFGLLDAIEKFDPSRE
IKFKTYAMTRIRGSIFDELRSVDWIPRSIRQKAKQLENIIAMLENKEGKKVDDEEIAKELGVSMEEYNSLLAKLSGTSLV
SLNDIWFLGDENDEVSFMETLESPMNMNPDNIIEKEEIKNVIVEAIQSLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
ISQLHTKAVARLRSKLSKVKSAIQKR

Sequences:

>Translated_266_residues
MSRLLDKYNQFDETDLWKQYRVKKDAEIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFEDLVSYGVFGLLDAIEKFDPSRE
IKFKTYAMTRIRGSIFDELRSVDWIPRSIRQKAKQLENIIAMLENKEGKKVDDEEIAKELGVSMEEYNSLLAKLSGTSLV
SLNDIWFLGDENDEVSFMETLESPMNMNPDNIIEKEEIKNVIVEAIQSLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
ISQLHTKAVARLRSKLSKVKSAIQKR
>Mature_265_residues
SRLLDKYNQFDETDLWKQYRVKKDAEIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFEDLVSYGVFGLLDAIEKFDPSREI
KFKTYAMTRIRGSIFDELRSVDWIPRSIRQKAKQLENIIAMLENKEGKKVDDEEIAKELGVSMEEYNSLLAKLSGTSLVS
LNDIWFLGDENDEVSFMETLESPMNMNPDNIIEKEEIKNVIVEAIQSLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESRI
SQLHTKAVARLRSKLSKVKSAIQKR

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=230, Percent_Identity=42.1739130434783, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1789098, Length=243, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789448, Length=215, Percent_Identity=28.3720930232558, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 30821; Mature: 30690

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLLDKYNQFDETDLWKQYRVKKDAEIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFEDL
CCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHH
VSYGVFGLLDAIEKFDPSREIKFKTYAMTRIRGSIFDELRSVDWIPRSIRQKAKQLENII
HHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMLENKEGKKVDDEEIAKELGVSMEEYNSLLAKLSGTSLVSLNDIWFLGDENDEVSFMET
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHH
LESPMNMNPDNIIEKEEIKNVIVEAIQSLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCCHHHHHHHHHHHHHH
ISQLHTKAVARLRSKLSKVKSAIQKR
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRLLDKYNQFDETDLWKQYRVKKDAEIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFEDL
CHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHH
VSYGVFGLLDAIEKFDPSREIKFKTYAMTRIRGSIFDELRSVDWIPRSIRQKAKQLENII
HHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMLENKEGKKVDDEEIAKELGVSMEEYNSLLAKLSGTSLVSLNDIWFLGDENDEVSFMET
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHH
LESPMNMNPDNIIEKEEIKNVIVEAIQSLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCCHHHHHHHHHHHHHH
ISQLHTKAVARLRSKLSKVKSAIQKR
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]