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The map label for this gene is yddS [C]

Identifier: 183220255

GI number: 183220255

Start: 864062

End: 865486

Strand: Reverse

Name: yddS [C]

Synonym: LEPBI_I0848

Alternate gene names: 183220255

Gene position: 865486-864062 (Counterclockwise)

Preceding gene: 183220257

Following gene: 183220247

Centisome position: 24.04

GC content: 36.07

Gene sequence:

>1425_bases
ATGAGAACCTTATCCCTCGTTTTCTTTCTCTTGTCCCTCACTTTTTGTAGGAGAGATTCTGTAGAGTTTGACATTAAAAT
TGCTCTGCCATCAGACCCAACGAATTTGGATCCACTTTTTAGCACTGATCTCACAAGCCAAAAACTAGCTCGATTCCTCC
ACCAAGGGCTCTTTATTTCAGAAAAAGGATTTTTTATCTCCCCTTGGATCACAAAGGAAACAAAAGTGCAAAGTGCTTCC
GAAAGCATTTTACGGTTTACCCTGAACTCAGACAGTCCACCAATTCAGGACATCCAATTTAGTTTATCTCGACTGATCTT
AGAATCCTATCCAAGAAAAGCGGATTATCAGTTTTTGAAATCAGTTGAGATCCTCTCGGGATCCGTACTCGAGTTACATA
TCCGAAAAGACACATCAGAATCGGAATGGAAGGAAAAACTCAGTTTACCATTTGCCTCTATCATTGGGAAAGAAGAGTGG
GCAAAAAATACGTTAAAAACGTATGGGAAATACAAACTAGTGAATTGGAAAAAAAATGAATTCATCGACATCCATTACCA
AAAAGACAATGGAATTCAATTCCCAAAAAGCATACGATTTTATATTTTACCTCAATCTACGACCTCATTGTTTTTATATC
GCAAATCAGAATTAGATGCTTTTAAACTATCGGATTTTTTACTTTCGATCCCAGAAGCAACATCGATATACGCTCTAACA
AAAAAAGGAAGATCCGTACAATATGTTACCATCAACCAAACGAATCCATGTTTTGATTTTCATTTCCGAAATGCACTTAA
CTTTAGTATTCCAAGAGAACTCATCATTCAAAAACTCTTAGAAAATCATGCGGATCTAACGTATGGTCCAATTCCATTAC
CGTATTTGGAAACATTAAAATTAAAATTAACTAACATCGATATTTCATACAACAGAGAGAAAGCGTTAATTGAATTAAAA
CAATCCAGATGTTATCCGAATATTTTAACAAAACAAATTGAATTTCGAATGCGTGGGGATGACGAAAACCAAACCAAAGG
AAGAGCCATTAAACAAGCGCTAGAAGAGATTGGATTAAAAATTAAATTAAAACCGATGGAAAAAGCTCCTCTATACAAAG
AAAACGGAGAGGGAAAAGGAGACTTAACACTCCTAACATGGTATTCCGATTATGATTCTGTTTGGAATTTTTTGGACCCA
CTTTTTCATCCAGACAAAACTGGGAATGGTGGGAACAGGTCTTTCTATCAAAATCCTAAACTTGGACTCATTTTCAACAA
ACCCAATCGGAACTTAACAGACGCTATAAAAGTAATTGAAACTGTAACGTTGGACAAACCCTGGATTTTCCTGTGGTCCA
TCCAGGAAAATTATTTGGTATCTAAGGAGTTTCTTCGTTATACCGAACTCGCCGATTATCTATAA

Upstream 100 bases:

>100_bases
CCGTTAAAAATAGAAACAAATATAGACAGAAAAACTCCTAAGCTGAGTCTGTATTTGTATTTCGCCAAATATGGCCAGAG
TTTTCGGTAAATCTTCACGT

Downstream 100 bases:

>100_bases
GAGGTGGTTCCAATTCCACAGAATCTACTGCAGTAGGTTGCACTTTTGATCCATCAGTTTCATAGGTTGAGATTTCAGAA
TCATCTTCTTCTGTTAGGTT

Product: ABC transporter periplasmic protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MRTLSLVFFLLSLTFCRRDSVEFDIKIALPSDPTNLDPLFSTDLTSQKLARFLHQGLFISEKGFFISPWITKETKVQSAS
ESILRFTLNSDSPPIQDIQFSLSRLILESYPRKADYQFLKSVEILSGSVLELHIRKDTSESEWKEKLSLPFASIIGKEEW
AKNTLKTYGKYKLVNWKKNEFIDIHYQKDNGIQFPKSIRFYILPQSTTSLFLYRKSELDAFKLSDFLLSIPEATSIYALT
KKGRSVQYVTINQTNPCFDFHFRNALNFSIPRELIIQKLLENHADLTYGPIPLPYLETLKLKLTNIDISYNREKALIELK
QSRCYPNILTKQIEFRMRGDDENQTKGRAIKQALEEIGLKIKLKPMEKAPLYKENGEGKGDLTLLTWYSDYDSVWNFLDP
LFHPDKTGNGGNRSFYQNPKLGLIFNKPNRNLTDAIKVIETVTLDKPWIFLWSIQENYLVSKEFLRYTELADYL

Sequences:

>Translated_474_residues
MRTLSLVFFLLSLTFCRRDSVEFDIKIALPSDPTNLDPLFSTDLTSQKLARFLHQGLFISEKGFFISPWITKETKVQSAS
ESILRFTLNSDSPPIQDIQFSLSRLILESYPRKADYQFLKSVEILSGSVLELHIRKDTSESEWKEKLSLPFASIIGKEEW
AKNTLKTYGKYKLVNWKKNEFIDIHYQKDNGIQFPKSIRFYILPQSTTSLFLYRKSELDAFKLSDFLLSIPEATSIYALT
KKGRSVQYVTINQTNPCFDFHFRNALNFSIPRELIIQKLLENHADLTYGPIPLPYLETLKLKLTNIDISYNREKALIELK
QSRCYPNILTKQIEFRMRGDDENQTKGRAIKQALEEIGLKIKLKPMEKAPLYKENGEGKGDLTLLTWYSDYDSVWNFLDP
LFHPDKTGNGGNRSFYQNPKLGLIFNKPNRNLTDAIKVIETVTLDKPWIFLWSIQENYLVSKEFLRYTELADYL
>Mature_474_residues
MRTLSLVFFLLSLTFCRRDSVEFDIKIALPSDPTNLDPLFSTDLTSQKLARFLHQGLFISEKGFFISPWITKETKVQSAS
ESILRFTLNSDSPPIQDIQFSLSRLILESYPRKADYQFLKSVEILSGSVLELHIRKDTSESEWKEKLSLPFASIIGKEEW
AKNTLKTYGKYKLVNWKKNEFIDIHYQKDNGIQFPKSIRFYILPQSTTSLFLYRKSELDAFKLSDFLLSIPEATSIYALT
KKGRSVQYVTINQTNPCFDFHFRNALNFSIPRELIIQKLLENHADLTYGPIPLPYLETLKLKLTNIDISYNREKALIELK
QSRCYPNILTKQIEFRMRGDDENQTKGRAIKQALEEIGLKIKLKPMEKAPLYKENGEGKGDLTLLTWYSDYDSVWNFLDP
LFHPDKTGNGGNRSFYQNPKLGLIFNKPNRNLTDAIKVIETVTLDKPWIFLWSIQENYLVSKEFLRYTELADYL

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787762, Length=316, Percent_Identity=22.4683544303797, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55170; Mature: 55170

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLSLVFFLLSLTFCRRDSVEFDIKIALPSDPTNLDPLFSTDLTSQKLARFLHQGLFIS
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEE
EKGFFISPWITKETKVQSASESILRFTLNSDSPPIQDIQFSLSRLILESYPRKADYQFLK
CCCCEEECCCCCCHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
SVEILSGSVLELHIRKDTSESEWKEKLSLPFASIIGKEEWAKNTLKTYGKYKLVNWKKNE
HHHHHCCCEEEEEEECCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCEEEEEECCCC
FIDIHYQKDNGIQFPKSIRFYILPQSTTSLFLYRKSELDAFKLSDFLLSIPEATSIYALT
EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEE
KKGRSVQYVTINQTNPCFDFHFRNALNFSIPRELIIQKLLENHADLTYGPIPLPYLETLK
CCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHEEE
LKLTNIDISYNREKALIELKQSRCYPNILTKQIEFRMRGDDENQTKGRAIKQALEEIGLK
EEEEEEEEEECCCHHHHHHHHHCCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IKLKPMEKAPLYKENGEGKGDLTLLTWYSDYDSVWNFLDPLFHPDKTGNGGNRSFYQNPK
EEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
LGLIFNKPNRNLTDAIKVIETVTLDKPWIFLWSIQENYLVSKEFLRYTELADYL
EEEEEECCCCCHHHHHHHHHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTLSLVFFLLSLTFCRRDSVEFDIKIALPSDPTNLDPLFSTDLTSQKLARFLHQGLFIS
CCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEE
EKGFFISPWITKETKVQSASESILRFTLNSDSPPIQDIQFSLSRLILESYPRKADYQFLK
CCCCEEECCCCCCHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
SVEILSGSVLELHIRKDTSESEWKEKLSLPFASIIGKEEWAKNTLKTYGKYKLVNWKKNE
HHHHHCCCEEEEEEECCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCEEEEEECCCC
FIDIHYQKDNGIQFPKSIRFYILPQSTTSLFLYRKSELDAFKLSDFLLSIPEATSIYALT
EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEE
KKGRSVQYVTINQTNPCFDFHFRNALNFSIPRELIIQKLLENHADLTYGPIPLPYLETLK
CCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHEEE
LKLTNIDISYNREKALIELKQSRCYPNILTKQIEFRMRGDDENQTKGRAIKQALEEIGLK
EEEEEEEEEECCCHHHHHHHHHCCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCCE
IKLKPMEKAPLYKENGEGKGDLTLLTWYSDYDSVWNFLDPLFHPDKTGNGGNRSFYQNPK
EEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
LGLIFNKPNRNLTDAIKVIETVTLDKPWIFLWSIQENYLVSKEFLRYTELADYL
EEEEEECCCCCHHHHHHHHHHEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA