| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is pbp1 [H]
Identifier: 183220254
GI number: 183220254
Start: 861622
End: 864105
Strand: Direct
Name: pbp1 [H]
Synonym: LEPBI_I0847
Alternate gene names: 183220254
Gene position: 861622-864105 (Clockwise)
Preceding gene: 183220253
Following gene: 183220256
Centisome position: 23.94
GC content: 39.94
Gene sequence:
>2484_bases ATGAACTACAAAAATAATTCCTTTTATTTGATATTAGAAGTATTGTATGGGCATCTAACGGATCTATTGCGGTTTTTATG GCAGAAAAAAAATCAAGTATTGGCCATTGGCTTCATTGTAGGAGTATTTCTTAGTTTTTTCTTTTTAGGTGGCGCCTATG TAGTATGGTCTGGTGAAGAGACAAGGGTTCATAAATCATTAGAAAAATACAGGTCCGAAGTTTCTAATTTTTACGATAGT TTCCAACCCAAATCAGTGAAGATCCTTGATCGCAGTGGAAAAGTGATGGGTGAATTTTATCGCCGAAATTTTCGCCCCAT TCGTACTGATAATTTAGCAAAACATAATGTCATTGTTTGGGCGGTGTTATCGTCGGAAGATCGGGAGTTTTTTTCCCACT CTGGTCTAAACTATACGGCCATTATGCGCGCAGTTGTTACCAATTTGGTTCAGTTTCGATTGTCCCAAGGTGGATCGACC ATCTCACAACAGTTAGCAAAATTAACTCTTAATCTTGGGAAGCGTAATTTATTCAATAAACTAACTGAATTGTATTGTAC GTTTTATATAGAAAGCCATTACTCTAAAGAAGAGATTTTGGCTATGTATTTAAACCAAATTTTTTTGGGAGAAGGGAATA CTGGAGTGGAAGAAGCCGCTCGATATTATTTTCGTAAACCCGCATCGGAACTGAGTCCTGAAGAAGCAGCTCTACTTGTG GGGATTATCCCTGCCCCGAGTGTTTACAATCCCGTTCGGAATCTTGGAATCGCACTTTCAAGACAGAAACGCGTGTTATA CGATATGGCGAGAAATCCGGAACTCCATCCGTCGCAGAAGGATATACCTGTTAAGTTTTCTGATTCCATCGAAGTGAATT TAAAACGATTTAGAACCATCTACAAAGTGAAAGAATCAAAGGATGAAGATGGGAATCCCAAATACTCAAGTGAAATTGGA AAGTATGGTGCCGATAAAGATTTTCGCGTCAATTTAGCTCCTGATTTTAATTCTGAGATTCGTCGGTTCATTTTAGAAAA ATTTTCCAATGAAGATTTGGAAGAACGAGGCCTTCTTGTTTACACGACCCTCGATTTGGAGAAACAAAGGTTCGCAGAAG ATGCTTTGCGCATCGGTGTCGATTCGGTTCGAAGTGATCTCTCCAAACAAGAGTCAGAATACCAGAAAAAAGGGAAAGGT GATCTTGCTGAAGTGACAAGGAGCATCTTACCACAGTTAAGTGGATCTATGATTTCACTCGACCCCGAAACGGGAGATGT GGAGGCAATGGTTGGTGGTTATAAAATCTCAAACGTGTTTCGCTTTAATCGTGCAGAAGAAGCCAAACGCCAACCAGGTT CCACGATCAAAGCTTTGGTCTATGCACTTGCATTTGAAAAACGAATTGTAAATCCATCCTCTAAAATCAAAGACGAAAAA TTGGATATCTCCGGTTACTCACCGAAAAACTGGTACAAAGGATACAAAGGGGAGATCACTGTCCGCCAAGCTTTGGCCCA ATCGGTGAATACGGTATCCGTGAAATTATTACACGAGGTTGGAATTTCTTATTTCATCCAAAAATTAAGTGCGATCCTTT CGATTCCTGAAGAAGAAGCAGAACAAAGATTCCAACGAAATTTATCCCTAGCGCTTGGTTCCGGTGAACTTAGTCCAATG GAGCTTTCTGTGATTTATGCTACCTTAATGAATGGAGGAAGACGAGTCACTCCCCGTAAAATCATTAAAATCACAGACAT GGATGGAAATGAATTTTATAATACTGTCCCCAATGAAGCCGCCGAACAAATATTAGATCCTGTTGCCTGTGCCATGGCCA TCAATACTTTGCAGTCTGTTTTGACTGAAGAAGGAACAATGACCTTAAAACGTAAGGAAGGGGAACCATTTTTATACGCG GGTAAAACAGGAACAGTCCAATCTCCAAAACTCAAATCATCAAAATGGAAAGGGATCAAAGGTGTGAGAGATGTTTGGTT TGCAGGTCTTACTCCAAGGAATGTAACGGTAGTTTGGGTGGGTCATGATGAAGGAGCTCCTTTCCCCGGGTCTGGTTCAG GAGTGTCTGGAGGAATTTGGTATCGTTATATTCAAAATGTAAAATCGAAATTGGGAATGGGAAACCAATTGGTTCCTAGT TTTGTTGGCGATTTTGTTAAAGTGGATGTATGCGCTGATGATGGTACCTTAATAGAAAATCATCCTGATTATGTATGTAA GGTGCCTCTTTTTGCACAATATTATTACATTGGAGATTTACCTCCGAAACGGAATGGATTTAATAAATCGGATCCACAAC CAAATATGATTACCCAGCCCAACCTAACAGAAGAAGATGATTCTGAAATCTCAACCTATGAAACTGATGGATCAAAAGTG CAACCTACTGCAGTAGATTCTGTGGAATTGGAACCACCTCTTATAGATAATCGGCGAGTTCGGTATAACGAAGAAACTCC TTAG
Upstream 100 bases:
>100_bases AAATCCCTGATTATGTGAAAAAAGGTGTGAGTTTTTATCCGGTCACTCGATTTGAAGAAGTCGAAACACTATTGTTTGGT AAATCGAAGAGTAAAAAAAG
Downstream 100 bases:
>100_bases ATACCAAATAATTTTCCTGGATGGACCACAGGAAAATCCAGGGTTTGTCCAACGTTACAGTTTCAATTACTTTTATAGCG TCTGTTAAGTTCCGATTGGG
Product: penicillin-binding protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MNYKNNSFYLILEVLYGHLTDLLRFLWQKKNQVLAIGFIVGVFLSFFFLGGAYVVWSGEETRVHKSLEKYRSEVSNFYDS FQPKSVKILDRSGKVMGEFYRRNFRPIRTDNLAKHNVIVWAVLSSEDREFFSHSGLNYTAIMRAVVTNLVQFRLSQGGST ISQQLAKLTLNLGKRNLFNKLTELYCTFYIESHYSKEEILAMYLNQIFLGEGNTGVEEAARYYFRKPASELSPEEAALLV GIIPAPSVYNPVRNLGIALSRQKRVLYDMARNPELHPSQKDIPVKFSDSIEVNLKRFRTIYKVKESKDEDGNPKYSSEIG KYGADKDFRVNLAPDFNSEIRRFILEKFSNEDLEERGLLVYTTLDLEKQRFAEDALRIGVDSVRSDLSKQESEYQKKGKG DLAEVTRSILPQLSGSMISLDPETGDVEAMVGGYKISNVFRFNRAEEAKRQPGSTIKALVYALAFEKRIVNPSSKIKDEK LDISGYSPKNWYKGYKGEITVRQALAQSVNTVSVKLLHEVGISYFIQKLSAILSIPEEEAEQRFQRNLSLALGSGELSPM ELSVIYATLMNGGRRVTPRKIIKITDMDGNEFYNTVPNEAAEQILDPVACAMAINTLQSVLTEEGTMTLKRKEGEPFLYA GKTGTVQSPKLKSSKWKGIKGVRDVWFAGLTPRNVTVVWVGHDEGAPFPGSGSGVSGGIWYRYIQNVKSKLGMGNQLVPS FVGDFVKVDVCADDGTLIENHPDYVCKVPLFAQYYYIGDLPPKRNGFNKSDPQPNMITQPNLTEEDDSEISTYETDGSKV QPTAVDSVELEPPLIDNRRVRYNEETP
Sequences:
>Translated_827_residues MNYKNNSFYLILEVLYGHLTDLLRFLWQKKNQVLAIGFIVGVFLSFFFLGGAYVVWSGEETRVHKSLEKYRSEVSNFYDS FQPKSVKILDRSGKVMGEFYRRNFRPIRTDNLAKHNVIVWAVLSSEDREFFSHSGLNYTAIMRAVVTNLVQFRLSQGGST ISQQLAKLTLNLGKRNLFNKLTELYCTFYIESHYSKEEILAMYLNQIFLGEGNTGVEEAARYYFRKPASELSPEEAALLV GIIPAPSVYNPVRNLGIALSRQKRVLYDMARNPELHPSQKDIPVKFSDSIEVNLKRFRTIYKVKESKDEDGNPKYSSEIG KYGADKDFRVNLAPDFNSEIRRFILEKFSNEDLEERGLLVYTTLDLEKQRFAEDALRIGVDSVRSDLSKQESEYQKKGKG DLAEVTRSILPQLSGSMISLDPETGDVEAMVGGYKISNVFRFNRAEEAKRQPGSTIKALVYALAFEKRIVNPSSKIKDEK LDISGYSPKNWYKGYKGEITVRQALAQSVNTVSVKLLHEVGISYFIQKLSAILSIPEEEAEQRFQRNLSLALGSGELSPM ELSVIYATLMNGGRRVTPRKIIKITDMDGNEFYNTVPNEAAEQILDPVACAMAINTLQSVLTEEGTMTLKRKEGEPFLYA GKTGTVQSPKLKSSKWKGIKGVRDVWFAGLTPRNVTVVWVGHDEGAPFPGSGSGVSGGIWYRYIQNVKSKLGMGNQLVPS FVGDFVKVDVCADDGTLIENHPDYVCKVPLFAQYYYIGDLPPKRNGFNKSDPQPNMITQPNLTEEDDSEISTYETDGSKV QPTAVDSVELEPPLIDNRRVRYNEETP >Mature_827_residues MNYKNNSFYLILEVLYGHLTDLLRFLWQKKNQVLAIGFIVGVFLSFFFLGGAYVVWSGEETRVHKSLEKYRSEVSNFYDS FQPKSVKILDRSGKVMGEFYRRNFRPIRTDNLAKHNVIVWAVLSSEDREFFSHSGLNYTAIMRAVVTNLVQFRLSQGGST ISQQLAKLTLNLGKRNLFNKLTELYCTFYIESHYSKEEILAMYLNQIFLGEGNTGVEEAARYYFRKPASELSPEEAALLV GIIPAPSVYNPVRNLGIALSRQKRVLYDMARNPELHPSQKDIPVKFSDSIEVNLKRFRTIYKVKESKDEDGNPKYSSEIG KYGADKDFRVNLAPDFNSEIRRFILEKFSNEDLEERGLLVYTTLDLEKQRFAEDALRIGVDSVRSDLSKQESEYQKKGKG DLAEVTRSILPQLSGSMISLDPETGDVEAMVGGYKISNVFRFNRAEEAKRQPGSTIKALVYALAFEKRIVNPSSKIKDEK LDISGYSPKNWYKGYKGEITVRQALAQSVNTVSVKLLHEVGISYFIQKLSAILSIPEEEAEQRFQRNLSLALGSGELSPM ELSVIYATLMNGGRRVTPRKIIKITDMDGNEFYNTVPNEAAEQILDPVACAMAINTLQSVLTEEGTMTLKRKEGEPFLYA GKTGTVQSPKLKSSKWKGIKGVRDVWFAGLTPRNVTVVWVGHDEGAPFPGSGSGVSGGIWYRYIQNVKSKLGMGNQLVPS FVGDFVKVDVCADDGTLIENHPDYVCKVPLFAQYYYIGDLPPKRNGFNKSDPQPNMITQPNLTEEDDSEISTYETDGSKV QPTAVDSVELEPPLIDNRRVRYNEETP
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=606, Percent_Identity=26.8976897689769, Blast_Score=188, Evalue=1e-48, Organism=Escherichia coli, GI1788867, Length=576, Percent_Identity=25.6944444444444, Blast_Score=140, Evalue=4e-34, Organism=Escherichia coli, GI87082258, Length=337, Percent_Identity=25.5192878338279, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789601, Length=186, Percent_Identity=36.0215053763441, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 93368; Mature: 93368
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYKNNSFYLILEVLYGHLTDLLRFLWQKKNQVLAIGFIVGVFLSFFFLGGAYVVWSGEE CCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCEEEEECCCH TRVHKSLEKYRSEVSNFYDSFQPKSVKILDRSGKVMGEFYRRNFRPIRTDNLAKHNVIVW HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEE AVLSSEDREFFSHSGLNYTAIMRAVVTNLVQFRLSQGGSTISQQLAKLTLNLGKRNLFNK EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LTELYCTFYIESHYSKEEILAMYLNQIFLGEGNTGVEEAARYYFRKPASELSPEEAALLV HHHHHHHEEHHCCCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCHHHCCCCCCEEEE GIIPAPSVYNPVRNLGIALSRQKRVLYDMARNPELHPSQKDIPVKFSDSIEVNLKRFRTI EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHH YKVKESKDEDGNPKYSSEIGKYGADKDFRVNLAPDFNSEIRRFILEKFSNEDLEERGLLV HHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCCEEE YTTLDLEKQRFAEDALRIGVDSVRSDLSKQESEYQKKGKGDLAEVTRSILPQLSGSMISL EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEE DPETGDVEAMVGGYKISNVFRFNRAEEAKRQPGSTIKALVYALAFEKRIVNPSSKIKDEK CCCCCCCCCEECCEEEHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCC LDISGYSPKNWYKGYKGEITVRQALAQSVNTVSVKLLHEVGISYFIQKLSAILSIPEEEA CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH EQRFQRNLSLALGSGELSPMELSVIYATLMNGGRRVTPRKIIKITDMDGNEFYNTVPNEA HHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHCCCHHH AEQILDPVACAMAINTLQSVLTEEGTMTLKRKEGEPFLYAGKTGTVQSPKLKSSKWKGIK HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC GVRDVWFAGLTPRNVTVVWVGHDEGAPFPGSGSGVSGGIWYRYIQNVKSKLGMGNQLVPS HHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHH FVGDFVKVDVCADDGTLIENHPDYVCKVPLFAQYYYIGDLPPKRNGFNKSDPQPNMITQP HHCCCEEEEEECCCCEEECCCCCCEEECCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCC NLTEEDDSEISTYETDGSKVQPTAVDSVELEPPLIDNRRVRYNEETP CCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNYKNNSFYLILEVLYGHLTDLLRFLWQKKNQVLAIGFIVGVFLSFFFLGGAYVVWSGEE CCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCEEEEECCCH TRVHKSLEKYRSEVSNFYDSFQPKSVKILDRSGKVMGEFYRRNFRPIRTDNLAKHNVIVW HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEE AVLSSEDREFFSHSGLNYTAIMRAVVTNLVQFRLSQGGSTISQQLAKLTLNLGKRNLFNK EEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LTELYCTFYIESHYSKEEILAMYLNQIFLGEGNTGVEEAARYYFRKPASELSPEEAALLV HHHHHHHEEHHCCCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCHHHCCCCCCEEEE GIIPAPSVYNPVRNLGIALSRQKRVLYDMARNPELHPSQKDIPVKFSDSIEVNLKRFRTI EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHH YKVKESKDEDGNPKYSSEIGKYGADKDFRVNLAPDFNSEIRRFILEKFSNEDLEERGLLV HHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHCCEEE YTTLDLEKQRFAEDALRIGVDSVRSDLSKQESEYQKKGKGDLAEVTRSILPQLSGSMISL EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEE DPETGDVEAMVGGYKISNVFRFNRAEEAKRQPGSTIKALVYALAFEKRIVNPSSKIKDEK CCCCCCCCCEECCEEEHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCC LDISGYSPKNWYKGYKGEITVRQALAQSVNTVSVKLLHEVGISYFIQKLSAILSIPEEEA CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH EQRFQRNLSLALGSGELSPMELSVIYATLMNGGRRVTPRKIIKITDMDGNEFYNTVPNEA HHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHCCCHHH AEQILDPVACAMAINTLQSVLTEEGTMTLKRKEGEPFLYAGKTGTVQSPKLKSSKWKGIK HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC GVRDVWFAGLTPRNVTVVWVGHDEGAPFPGSGSGVSGGIWYRYIQNVKSKLGMGNQLVPS HHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHH FVGDFVKVDVCADDGTLIENHPDYVCKVPLFAQYYYIGDLPPKRNGFNKSDPQPNMITQP HHCCCEEEEEECCCCEEECCCCCCEEECCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCC NLTEEDDSEISTYETDGSKVQPTAVDSVELEPPLIDNRRVRYNEETP CCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA