| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is fliF [H]
Identifier: 183220151
GI number: 183220151
Start: 755184
End: 756884
Strand: Reverse
Name: fliF [H]
Synonym: LEPBI_I0739
Alternate gene names: 183220151
Gene position: 756884-755184 (Counterclockwise)
Preceding gene: 183220154
Following gene: 183220149
Centisome position: 21.03
GC content: 42.5
Gene sequence:
>1701_bases ATGCCTGAACCACTGCAAAAGATCATCGACAATCTAAAAGAGTTATTCAACAAACTCGACAAAACCAAAAAAATGATTTT GGCTGGGGTACTTGCAGTGGTAGTGGTGGCCGTCATCATCCTCTCCAATGTCTCCTCCCAAAGGAACCGAGTGGTCCTTT TCAAAGACTTGGATTCCAAAGACTTCTCTGAAGTGACAAAAAAATTAGATGCCCTTGGTTACTCTTATGGCTCAAGCGAA ACAAGTCTCATCACTGTTGATCCAGAACAAAGGCAAGAAATTGTCACAAAACTCGCACAAGAGAATTTAATCCCTGCTGG TGTGACTGGTTGGGAACTCTTTGATATCGAAAAATTCACAGAAACTCAATTTGATAAAGACATCAAAAAGTACAGAGCAC TCAAAGGTGCGATTGAAAAGTCGCTTAACACCTTACGCCCAATCGAAAAAGCAGATGTAAACATTGCCATCCCCGAAGGG GATTTGTTTGAATCCAATTCGTATCCTGTGAAAGCAAGTGTGATCTTACACTTCCGACCAGGTGTGGAAGGGATTAGCAA AAAAGAAATCAAAGGGATTGTCAACTTAGTCGCGAGAGCTGTTCCGAAACTCAAACCAGAAAACGTGAGTGTGGCCGATC CCGATGGAAAGATCATTTCCGATTTTGAAGAAGACTTAGAAAAAGAAAGATTAGAACTACGTATCGTCCAAGAAAAATTA CGAATCGAAGAAGAAGAACGTGTCAAACGACTCATTGATATCCGAAATACACTTCGATGGTATTTGGGTGGTGAAGACCG AGTGGACATCACTCGCTTTGAATACTCCTTCAACTGGGACCAAGAATCCTTAACAGAAAACGAAGTTTTACCCGTTGTTG CCGAGGAAGATAACCCTGACACTCCATATAACGAACGTAAATTGGTTGATGGTTATTCCTTAAAAGTTTCATCCAAAGAA ACAAAGGAATCATTTAAAGGAAGGGGATTTACTCCAGATGGACCGGCAGGTACAGAACCAAACCTACCTCCTGGTTATAA AGATACCGATTACCAAAAAGCCGAATATTCCAAAGACGAAAATATCAATAACTACGAATTCAACAAACGTGTGAAAGATA TCAAACGCCAACCTTGGAAAATTGAAAAGATCGGATTGTCTGTCGTTGTGGATGGAGTTTGGGAACGAAAAGAACGGGAA GATGGGTTGGGTTATGATCGTAAGTACATCCCTGTTGCGGAACCCGATTTAAAACTCATTCGTAAAAACTTAGAAGCAGC GATTGGATACACTCGTTCCCGTGGTGACCAAATCAGTGTGATCACGATTCCGAAAGATAGAACCGAACAATTCCGCGCAG AAGATGAAGAGTTCCAAAGACAACGTGCCATCCGCAATATGGTGATCGCATCCCTAGTCATTCTCATCTTACTCATCCTT GCCATCTTAGTGTATCGAGCGATCAAAAAAGAAATCGCAAGAAGAAGAAGACTCAGAGAAGAAGAACTTGCAGCGCAACA ACAGATGATGAGAGAAGCGGCACTCCGTGTGATGGACGAAGGGGGAGCAGAAGTCGAACTCTCCCTCGACGAAAAACTCA GACGGGAACTCCTCGAAAATGCAATCAACCTGGCAAAAGAAAAACCAGAAGATGTGGCGCAATTACTCCGCACTTGGCTT GCGGAAGAAGAACAAACGTAA
Upstream 100 bases:
>100_bases GAACTAGGAATATAACAGGATTTTTACTCCCCCCGAAAAGTACTTGTACAATTCAGGGATTTCGTGGCATTATGTCTCAA ATCTCGACGAGGCCCGAACT
Downstream 100 bases:
>100_bases GACAAACAGAACTTAGCTGATCTTTGATTATGTATCGGCTAGGTTTCTTTTTTCCACCGAATATTGGCACCACGAGAAAT CCGAGCATACACCTCTCGGA
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 566; Mature: 565
Protein sequence:
>566_residues MPEPLQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFSEVTKKLDALGYSYGSSE TSLITVDPEQRQEIVTKLAQENLIPAGVTGWELFDIEKFTETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEG DLFESNSYPVKASVILHFRPGVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKL RIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPDTPYNERKLVDGYSLKVSSKE TKESFKGRGFTPDGPAGTEPNLPPGYKDTDYQKAEYSKDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKERE DGLGYDRKYIPVAEPDLKLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEFQRQRAIRNMVIASLVILILLIL AILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKLRRELLENAINLAKEKPEDVAQLLRTWL AEEEQT
Sequences:
>Translated_566_residues MPEPLQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFSEVTKKLDALGYSYGSSE TSLITVDPEQRQEIVTKLAQENLIPAGVTGWELFDIEKFTETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEG DLFESNSYPVKASVILHFRPGVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKL RIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPDTPYNERKLVDGYSLKVSSKE TKESFKGRGFTPDGPAGTEPNLPPGYKDTDYQKAEYSKDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKERE DGLGYDRKYIPVAEPDLKLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEFQRQRAIRNMVIASLVILILLIL AILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKLRRELLENAINLAKEKPEDVAQLLRTWL AEEEQT >Mature_565_residues PEPLQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFSEVTKKLDALGYSYGSSET SLITVDPEQRQEIVTKLAQENLIPAGVTGWELFDIEKFTETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGD LFESNSYPVKASVILHFRPGVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKLR IEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPDTPYNERKLVDGYSLKVSSKET KESFKGRGFTPDGPAGTEPNLPPGYKDTDYQKAEYSKDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKERED GLGYDRKYIPVAEPDLKLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEFQRQRAIRNMVIASLVILILLILA ILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKLRRELLENAINLAKEKPEDVAQLLRTWLA EEEQT
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=578, Percent_Identity=26.4705882352941, Blast_Score=143, Evalue=4e-35,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 65033; Mature: 64902
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEPLQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC DFSEVTKKLDALGYSYGSSETSLITVDPEQRQEIVTKLAQENLIPAGVTGWELFDIEKFT HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHH ETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGDLFESNSYPVKASVILHFRP HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCCCEEEEEEEEECC GVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKL CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH RIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPD CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHCCCCCCEEEEECCCCCC TPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPNLPPGYKDTDYQKAEYSKDE CCCCCCEECCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC NINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKEREDGLGYDRKYIPVAEPDLKLI CCCCCHHHHHHHHHHCCCCEEHHHCHHHEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEFQRQRAIRNMVIASLVILILLIL HHHHHHHHCHHHCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKLRRELLEN HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHH AINLAKEKPEDVAQLLRTWLAEEEQT HHHHHHCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PEPLQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC DFSEVTKKLDALGYSYGSSETSLITVDPEQRQEIVTKLAQENLIPAGVTGWELFDIEKFT HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEECHHHHH ETQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGDLFESNSYPVKASVILHFRP HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCCCCCCEEEEEEEEECC GVEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKL CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH RIEEEERVKRLIDIRNTLRWYLGGEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPD CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHCCCCCCEEEEECCCCCC TPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPNLPPGYKDTDYQKAEYSKDE CCCCCCEECCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC NINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKEREDGLGYDRKYIPVAEPDLKLI CCCCCHHHHHHHHHHCCCCEEHHHCHHHEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH RKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEFQRQRAIRNMVIASLVILILLIL HHHHHHHHCHHHCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDEKLRRELLEN HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHH AINLAKEKPEDVAQLLRTWLAEEEQT HHHHHHCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]