| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is nylB [H]
Identifier: 183219945
GI number: 183219945
Start: 525189
End: 526370
Strand: Reverse
Name: nylB [H]
Synonym: LEPBI_I0527
Alternate gene names: 183219945
Gene position: 526370-525189 (Counterclockwise)
Preceding gene: 183219946
Following gene: 183219944
Centisome position: 14.62
GC content: 40.19
Gene sequence:
>1182_bases ATGAAAAAAATTCTAATCTTACTTATTGTTCTTTTTACACTACAATGTGGAAAGGATCTATCTCCCTTTGGTGGAGAACC AAATGTCTCCGCTTTACCAAAACGTTTAAAACCAGAGTGGCCAAGTCCTGATTGGAAAATCGTAAAACCCGAATCTGTTG GAGTAACCTCAGCAAAACTCAAATTAGTTGAAGAGTATGCTTTCACTCGTACTGGAGATGAGACGGATCGGAAAGGTAGA AGGACCGATGCAGTTGTCATCCTTCGCAATGGAAAACTCATTTACGAAAAATATGCTCGTAATTTTACAGAAGATAAAGT CCACTTAACTTGGTCTGTTTCCAAAAGTGTTTTACAAACCATGTATGGGATCGCCGTCAAACAAGGACTCATCAAATTAG ATGACCCAGGTTATTACCATTACGAACCACTTAGCCGAGATGAGGCACATAAAAAAATCACCATTCGCCATTTGTTAAAC ATGTCATCTGGACTTGCTGCGGAAGAAGGGTATGAAAGTGGACCTCTAAAATCTTCCGTGATTGCGATGTTATACACACG TGGGAGAAAAGATATGGGAAGTTTTTGTGCAAGTCTTCCCCTGCGCGCAGAACCAGGAACACAAGTATACTATTCAAGTT GTGATACCAATATCTTATCTGCGATTTTGAAAAAAGTGTATGGTGCGGAAGAATATGACAAACTACCTTTTGAAAAAATC TTCAAACCTTTAGGAATCACAAATGTTACATTTGAACGAGATGGTTCCGGGACGTATGTGGGTTCTTCTTATCTTTATAT GACCGCAAGGGACCTTGCTAAAATTGGGTATTTGTATTTAAATGATGGTGTTTGGAATGGAGAGAGATTATTACCTGAAG GTTGGGTGACATTCACTCGGACTCCTGCTCCTGGTTACAAAACCACTCCCTATTCAGATGATTTGTCCCAAGACAATTAC ACGGCCCATTGGTATGCGAACACAGGAATTCCGAATCGAGGGATCCATGAACCTTGGCCTGATGCACCAAATGATACATT CGCCGCCATTGGCCATTGGGGTCAGATGTTGTATGTCATCCCCAGTTTAGATCTCGTAGTAGTTCGGTTTGGTGATGATC GTGAAAAAGCATTTATCAAAAATGATTTTTTAAAACTAATTAAGGAATCGGTGATTCGGTAA
Upstream 100 bases:
>100_bases CTAAAGGGTTACGCAGAAAAAGTATAACAATCCACTTTTTTCCTTTGCAAAGCGATTGAATCAGCATAGAATTCTCATTC GAATCACTGTTAGGAATTCT
Downstream 100 bases:
>100_bases TCATATGAAACGTAAAATCTCGGTTATACTCGCATTGTTATTTTTATTTCTTTTGTTTTGGGCACAGTGGAATTGGAAAC ATTTATCCAGTTTTCCCTCC
Product: putative penicillin-binding protein, transpeptidase
Products: NA
Alternate protein names: Nylon oligomers-degrading enzyme EII [H]
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MKKILILLIVLFTLQCGKDLSPFGGEPNVSALPKRLKPEWPSPDWKIVKPESVGVTSAKLKLVEEYAFTRTGDETDRKGR RTDAVVILRNGKLIYEKYARNFTEDKVHLTWSVSKSVLQTMYGIAVKQGLIKLDDPGYYHYEPLSRDEAHKKITIRHLLN MSSGLAAEEGYESGPLKSSVIAMLYTRGRKDMGSFCASLPLRAEPGTQVYYSSCDTNILSAILKKVYGAEEYDKLPFEKI FKPLGITNVTFERDGSGTYVGSSYLYMTARDLAKIGYLYLNDGVWNGERLLPEGWVTFTRTPAPGYKTTPYSDDLSQDNY TAHWYANTGIPNRGIHEPWPDAPNDTFAAIGHWGQMLYVIPSLDLVVVRFGDDREKAFIKNDFLKLIKESVIR
Sequences:
>Translated_393_residues MKKILILLIVLFTLQCGKDLSPFGGEPNVSALPKRLKPEWPSPDWKIVKPESVGVTSAKLKLVEEYAFTRTGDETDRKGR RTDAVVILRNGKLIYEKYARNFTEDKVHLTWSVSKSVLQTMYGIAVKQGLIKLDDPGYYHYEPLSRDEAHKKITIRHLLN MSSGLAAEEGYESGPLKSSVIAMLYTRGRKDMGSFCASLPLRAEPGTQVYYSSCDTNILSAILKKVYGAEEYDKLPFEKI FKPLGITNVTFERDGSGTYVGSSYLYMTARDLAKIGYLYLNDGVWNGERLLPEGWVTFTRTPAPGYKTTPYSDDLSQDNY TAHWYANTGIPNRGIHEPWPDAPNDTFAAIGHWGQMLYVIPSLDLVVVRFGDDREKAFIKNDFLKLIKESVIR >Mature_393_residues MKKILILLIVLFTLQCGKDLSPFGGEPNVSALPKRLKPEWPSPDWKIVKPESVGVTSAKLKLVEEYAFTRTGDETDRKGR RTDAVVILRNGKLIYEKYARNFTEDKVHLTWSVSKSVLQTMYGIAVKQGLIKLDDPGYYHYEPLSRDEAHKKITIRHLLN MSSGLAAEEGYESGPLKSSVIAMLYTRGRKDMGSFCASLPLRAEPGTQVYYSSCDTNILSAILKKVYGAEEYDKLPFEKI FKPLGITNVTFERDGSGTYVGSSYLYMTARDLAKIGYLYLNDGVWNGERLLPEGWVTFTRTPAPGYKTTPYSDDLSQDNY TAHWYANTGIPNRGIHEPWPDAPNDTFAAIGHWGQMLYVIPSLDLVVVRFGDDREKAFIKNDFLKLIKESVIR
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: =3.5.1.46 [H]
Molecular weight: Translated: 44380; Mature: 44380
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILILLIVLFTLQCGKDLSPFGGEPNVSALPKRLKPEWPSPDWKIVKPESVGVTSAKL CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHH KLVEEYAFTRTGDETDRKGRRTDAVVILRNGKLIYEKYARNFTEDKVHLTWSVSKSVLQT HHHHHHHHHCCCCCHHCCCCCCCEEEEEECCCEEHHHHHCCCCCCEEEEEEHHHHHHHHH MYGIAVKQGLIKLDDPGYYHYEPLSRDEAHKKITIRHLLNMSSGLAAEEGYESGPLKSSV HHHHHHHCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH IAMLYTRGRKDMGSFCASLPLRAEPGTQVYYSSCDTNILSAILKKVYGAEEYDKLPFEKI HHHHHHCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCHHHH FKPLGITNVTFERDGSGTYVGSSYLYMTARDLAKIGYLYLNDGVWNGERLLPEGWVTFTR HHCCCCCEEEEEECCCCCEECCCEEEEEHHHHHHHCEEEEECCCCCCCEECCCCCEEEEE TPAPGYKTTPYSDDLSQDNYTAHWYANTGIPNRGIHEPWPDAPNDTFAAIGHWGQMLYVI CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEE PSLDLVVVRFGDDREKAFIKNDFLKLIKESVIR CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKILILLIVLFTLQCGKDLSPFGGEPNVSALPKRLKPEWPSPDWKIVKPESVGVTSAKL CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHH KLVEEYAFTRTGDETDRKGRRTDAVVILRNGKLIYEKYARNFTEDKVHLTWSVSKSVLQT HHHHHHHHHCCCCCHHCCCCCCCEEEEEECCCEEHHHHHCCCCCCEEEEEEHHHHHHHHH MYGIAVKQGLIKLDDPGYYHYEPLSRDEAHKKITIRHLLNMSSGLAAEEGYESGPLKSSV HHHHHHHCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH IAMLYTRGRKDMGSFCASLPLRAEPGTQVYYSSCDTNILSAILKKVYGAEEYDKLPFEKI HHHHHHCCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHCCCHHHH FKPLGITNVTFERDGSGTYVGSSYLYMTARDLAKIGYLYLNDGVWNGERLLPEGWVTFTR HHCCCCCEEEEEECCCCCEECCCEEEEEHHHHHHHCEEEEECCCCCCCEECCCCCEEEEE TPAPGYKTTPYSDDLSQDNYTAHWYANTGIPNRGIHEPWPDAPNDTFAAIGHWGQMLYVI CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEE PSLDLVVVRFGDDREKAFIKNDFLKLIKESVIR CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6646204; 6389532; 2512123 [H]