| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311331
Identifier: 18311331
GI number: 18311331
Start: 2707512
End: 2709113
Strand: Reverse
Name: 18311331
Synonym: CPE2349
Alternate gene names: NA
Gene position: 2709113-2707512 (Counterclockwise)
Preceding gene: 18311332
Following gene: 18311330
Centisome position: 89.37
GC content: 31.65
Gene sequence:
>1602_bases ATGACTATTAGAATAAATAATATTAGTTTAGATATAAATGAAGATTTAAGTCTTTTAAAAAATAAAGTAGCTAAAAAACT AAGGATGTCTAAGGATGAAATTGGAGATATAAAAATAATAAAAGAATCTTTAGATGCAAGAAAAAAGAATCTTATAAAGT TTAATTACTGTATAAACATAGAACATGAAGATGAAGAAAAAATAGTAGCTAGACTTAATGATAAGGATGTAAAGATAGAT AAGGTAAATTATGATTTTGATTTTAATTTTGGGGAGAAAAAACTTCAGCACAGACCAGTAGTTATAGGATTAGGGCCAGC AGGGCTTTTTGCAGCTCTTTTATTAGCTAAGAAGGGGTTTAATCCAATTGTCTTTGAAAGAGGAGAAGATGTAGATTCTA GAACTAAAACTGTAGAGGAATTTTGGAGAACTGGAGAATTAAATCCAGAGTCAAATGTACAGTTTGGTGAAGGGGGAGCG GGAGCCTTTTCAGATGGAAAACTTACAACTAGAATAAAAGATACAAGATGTGATTATGTTCTTGATGCTCTTGTGAGAAA TGGAGCACCAGAGGAAATAATATATAAAGGTAAACCACATGTAGGAACTGATATATTAAAAAATGTAGTTAAGAATATCA GAGAGGAAATAAAAAGACATGGTGGAGAAGTTCATTTCAATTCAAGGTTTGAAGGAATAATAAAAAAAGATAACAAATTA AAAGGTATAAAAGTAAATGGAGAAGAAGTACCTTGTGAAGTAGCAATTTTAGCTTTAGGACATAGTTCTAGAGATACATA TGAAATGTTATTTAATGAAGGTGTCTTTATGAAACAAAAACCTTTTGCTATTGGAGTTAGAATAGAGCATCCACAAGAAA TTATAAATTTAAGTCAGTATGGAGAAAAATATGCTAACCATCCAAGATTAAAGGCTGCTGAATACAGATTAGCATATCAA AGTAAAACTCTAGATAGAGCAGTTTATTCATTCTGTATGTGTCCAGGGGGAGTAGTTGTAAATGCTTCTTCAGAGGAAAA AAGATTATGCGTAAATGGAATGAGTTATCATGCTAGAGATAAAGAAAACGCTAACTCTGCTTTAGTTGTAACTGTAGGGC CAAATGATTTTGGAGGAGATCATCCTTTAGAGGGAATGAAGTTCCAAAGACACTATGAAGAACTTGCCTTTAAACTAGGT GGAGGAAATTATAACACTCCAGTTCAATTAGTTGGAGATTTTATGAAGGATAGAGTTACAACTAAGTTAGGAAAGGTTAA TCCAAGTGTATTAAGCAATGGATATAGATTTGAAGATTTAAGAAAGTGTTTACCTTCTTACGTAATAGATGGCTTAAAAG AGGGAATAACTGATTTTGATAGAAAGATAAAAGGTTTTGGACATAGTGATAGTGTATTAACTGGTATAGAAACAAGAACA TCAGCTCCAGTTAGAATTGAAAGAAATGAAAAGTTACAAAGTATATCTTTAGAGGGTTTATATCCAGCAGGAGAGGGTGC TGGATTTGCAGGAGGTATTGTTTCAGCAGCTGTAGATGGATTAAAAGTAGCTGAAAATATAATGAAAGAATATCGTGTTT AA
Upstream 100 bases:
>100_bases TGAAAATTCAAATAATAAACAATAAATATTTACCACAGATTACTTTAAGCGTATTCTGTGGTAAAATAATTTACTAAAGA AATAAAATGGAGGAAGTTTT
Downstream 100 bases:
>100_bases AATTTAACAATTTAATAAAAAATAATAAATTGAATATTCTGAAAACTAATGTTTTCAGAATATTTTTTGGTAGAATATAG TTATGGAGAATTAATTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 533; Mature: 532
Protein sequence:
>533_residues MTIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINIEHEDEEKIVARLNDKDVKID KVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGA GAFSDGKLTTRIKDTRCDYVLDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQYGEKYANHPRLKAAEYRLAYQ SKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARDKENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLG GGNYNTPVQLVGDFMKDRVTTKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV
Sequences:
>Translated_533_residues MTIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINIEHEDEEKIVARLNDKDVKID KVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGA GAFSDGKLTTRIKDTRCDYVLDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQYGEKYANHPRLKAAEYRLAYQ SKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARDKENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLG GGNYNTPVQLVGDFMKDRVTTKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV >Mature_532_residues TIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINIEHEDEEKIVARLNDKDVKIDK VNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGAG AFSDGKLTTRIKDTRCDYVLDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKLK GIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQYGEKYANHPRLKAAEYRLAYQS KTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARDKENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLGG GNYNTPVQLVGDFMKDRVTTKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRTS APVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 59571; Mature: 59440
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINI CEEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCEEEEEEEEEC EHEDEEKIVARLNDKDVKIDKVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGF CCCCHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCC NPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGAGAFSDGKLTTRIKDTRCDYV CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEHHHHHHH LDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCE KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQY EEEEECCCCCCEEEEEEEECCCCCHHHHHHHCCCCEEECCCEEEEEEECCHHHHHHHHHH GEKYANHPRLKAAEYRLAYQSKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARD HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCCC KENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLGGGNYNTPVQLVGDFMKDRVT CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHH TKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV CCCEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINI EEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCEEEEEEEEEC EHEDEEKIVARLNDKDVKIDKVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGF CCCCHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCC NPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGAGAFSDGKLTTRIKDTRCDYV CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEHHHHHHH LDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCE KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQY EEEEECCCCCCEEEEEEEECCCCCHHHHHHHCCCCEEECCCEEEEEEECCHHHHHHHHHH GEKYANHPRLKAAEYRLAYQSKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARD HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCCC KENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLGGGNYNTPVQLVGDFMKDRVT CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHH TKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV CCCEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]