Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18311331

Identifier: 18311331

GI number: 18311331

Start: 2707512

End: 2709113

Strand: Reverse

Name: 18311331

Synonym: CPE2349

Alternate gene names: NA

Gene position: 2709113-2707512 (Counterclockwise)

Preceding gene: 18311332

Following gene: 18311330

Centisome position: 89.37

GC content: 31.65

Gene sequence:

>1602_bases
ATGACTATTAGAATAAATAATATTAGTTTAGATATAAATGAAGATTTAAGTCTTTTAAAAAATAAAGTAGCTAAAAAACT
AAGGATGTCTAAGGATGAAATTGGAGATATAAAAATAATAAAAGAATCTTTAGATGCAAGAAAAAAGAATCTTATAAAGT
TTAATTACTGTATAAACATAGAACATGAAGATGAAGAAAAAATAGTAGCTAGACTTAATGATAAGGATGTAAAGATAGAT
AAGGTAAATTATGATTTTGATTTTAATTTTGGGGAGAAAAAACTTCAGCACAGACCAGTAGTTATAGGATTAGGGCCAGC
AGGGCTTTTTGCAGCTCTTTTATTAGCTAAGAAGGGGTTTAATCCAATTGTCTTTGAAAGAGGAGAAGATGTAGATTCTA
GAACTAAAACTGTAGAGGAATTTTGGAGAACTGGAGAATTAAATCCAGAGTCAAATGTACAGTTTGGTGAAGGGGGAGCG
GGAGCCTTTTCAGATGGAAAACTTACAACTAGAATAAAAGATACAAGATGTGATTATGTTCTTGATGCTCTTGTGAGAAA
TGGAGCACCAGAGGAAATAATATATAAAGGTAAACCACATGTAGGAACTGATATATTAAAAAATGTAGTTAAGAATATCA
GAGAGGAAATAAAAAGACATGGTGGAGAAGTTCATTTCAATTCAAGGTTTGAAGGAATAATAAAAAAAGATAACAAATTA
AAAGGTATAAAAGTAAATGGAGAAGAAGTACCTTGTGAAGTAGCAATTTTAGCTTTAGGACATAGTTCTAGAGATACATA
TGAAATGTTATTTAATGAAGGTGTCTTTATGAAACAAAAACCTTTTGCTATTGGAGTTAGAATAGAGCATCCACAAGAAA
TTATAAATTTAAGTCAGTATGGAGAAAAATATGCTAACCATCCAAGATTAAAGGCTGCTGAATACAGATTAGCATATCAA
AGTAAAACTCTAGATAGAGCAGTTTATTCATTCTGTATGTGTCCAGGGGGAGTAGTTGTAAATGCTTCTTCAGAGGAAAA
AAGATTATGCGTAAATGGAATGAGTTATCATGCTAGAGATAAAGAAAACGCTAACTCTGCTTTAGTTGTAACTGTAGGGC
CAAATGATTTTGGAGGAGATCATCCTTTAGAGGGAATGAAGTTCCAAAGACACTATGAAGAACTTGCCTTTAAACTAGGT
GGAGGAAATTATAACACTCCAGTTCAATTAGTTGGAGATTTTATGAAGGATAGAGTTACAACTAAGTTAGGAAAGGTTAA
TCCAAGTGTATTAAGCAATGGATATAGATTTGAAGATTTAAGAAAGTGTTTACCTTCTTACGTAATAGATGGCTTAAAAG
AGGGAATAACTGATTTTGATAGAAAGATAAAAGGTTTTGGACATAGTGATAGTGTATTAACTGGTATAGAAACAAGAACA
TCAGCTCCAGTTAGAATTGAAAGAAATGAAAAGTTACAAAGTATATCTTTAGAGGGTTTATATCCAGCAGGAGAGGGTGC
TGGATTTGCAGGAGGTATTGTTTCAGCAGCTGTAGATGGATTAAAAGTAGCTGAAAATATAATGAAAGAATATCGTGTTT
AA

Upstream 100 bases:

>100_bases
TGAAAATTCAAATAATAAACAATAAATATTTACCACAGATTACTTTAAGCGTATTCTGTGGTAAAATAATTTACTAAAGA
AATAAAATGGAGGAAGTTTT

Downstream 100 bases:

>100_bases
AATTTAACAATTTAATAAAAAATAATAAATTGAATATTCTGAAAACTAATGTTTTCAGAATATTTTTTGGTAGAATATAG
TTATGGAGAATTAATTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MTIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINIEHEDEEKIVARLNDKDVKID
KVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGA
GAFSDGKLTTRIKDTRCDYVLDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL
KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQYGEKYANHPRLKAAEYRLAYQ
SKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARDKENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLG
GGNYNTPVQLVGDFMKDRVTTKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT
SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV

Sequences:

>Translated_533_residues
MTIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINIEHEDEEKIVARLNDKDVKID
KVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGA
GAFSDGKLTTRIKDTRCDYVLDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL
KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQYGEKYANHPRLKAAEYRLAYQ
SKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARDKENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLG
GGNYNTPVQLVGDFMKDRVTTKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT
SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV
>Mature_532_residues
TIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINIEHEDEEKIVARLNDKDVKIDK
VNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGAG
AFSDGKLTTRIKDTRCDYVLDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKLK
GIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQYGEKYANHPRLKAAEYRLAYQS
KTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARDKENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLGG
GNYNTPVQLVGDFMKDRVTTKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRTS
APVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV

Specific function: Unknown

COG id: COG2509

COG function: function code R; Uncharacterized FAD-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004792 [H]

Pfam domain/function: PF03486 HI0933_like [H]

EC number: NA

Molecular weight: Translated: 59571; Mature: 59440

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINI
CEEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCEEEEEEEEEC
EHEDEEKIVARLNDKDVKIDKVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGF
CCCCHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCC
NPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGAGAFSDGKLTTRIKDTRCDYV
CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEHHHHHHH
LDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL
HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCE
KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQY
EEEEECCCCCCEEEEEEEECCCCCHHHHHHHCCCCEEECCCEEEEEEECCHHHHHHHHHH
GEKYANHPRLKAAEYRLAYQSKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARD
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCCC
KENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLGGGNYNTPVQLVGDFMKDRVT
CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHH
TKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT
HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV
CCCEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIRINNISLDINEDLSLLKNKVAKKLRMSKDEIGDIKIIKESLDARKKNLIKFNYCINI
EEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCEEEEEEEEEC
EHEDEEKIVARLNDKDVKIDKVNYDFDFNFGEKKLQHRPVVIGLGPAGLFAALLLAKKGF
CCCCHHHHHHHCCCCCEEEEEEEEEEECCCCHHHHCCCCEEEEECHHHHHHHHHHHHCCC
NPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEGGAGAFSDGKLTTRIKDTRCDYV
CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEHHHHHHH
LDALVRNGAPEEIIYKGKPHVGTDILKNVVKNIREEIKRHGGEVHFNSRFEGIIKKDNKL
HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCE
KGIKVNGEEVPCEVAILALGHSSRDTYEMLFNEGVFMKQKPFAIGVRIEHPQEIINLSQY
EEEEECCCCCCEEEEEEEECCCCCHHHHHHHCCCCEEECCCEEEEEEECCHHHHHHHHHH
GEKYANHPRLKAAEYRLAYQSKTLDRAVYSFCMCPGGVVVNASSEEKRLCVNGMSYHARD
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCCC
KENANSALVVTVGPNDFGGDHPLEGMKFQRHYEELAFKLGGGNYNTPVQLVGDFMKDRVT
CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHH
TKLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHSDSVLTGIETRT
HHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
SAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIMKEYRV
CCCEEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8396545 [H]