| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is cphA [H]
Identifier: 18311195
GI number: 18311195
Start: 2533080
End: 2535704
Strand: Reverse
Name: cphA [H]
Synonym: CPE2213
Alternate gene names: 18311195
Gene position: 2535704-2533080 (Counterclockwise)
Preceding gene: 18311196
Following gene: 18311194
Centisome position: 83.65
GC content: 29.56
Gene sequence:
>2625_bases ATGAAGATAAATAATCAACGTATCTTTGAGGGAAGAAACATATATTCACATAGAAAATGTATTAGATTAGATGTTGATTT AGAGGGATATTGTGAAACTCCTACTAAAGATATTGATGGATTCAATGAAAGGTTATTAAGTTATGTTCCAGAGTTATATA CTCATAGATGTGGAATAGACATAGAAGGTGGATTTGTTCAACGATTAAAAGAGGGAACATACTTAGCTCATGTTTGTGAA CATACAATCATAGGAATACATAATAAACTAGGTATAGATATAAAATATGGAAAAGCAAGAGAAATAAAGGATGATTTTTA TTACATAATATTTGAATATAAATTAAAAAGAACAGCAATATTAATAGCTGAATTAGCCATAGATCTCATCAATTCAATAA TAAAGAAAAAAGATATTAACTTTGATGAAAGAATAGAAATAATAAATAGAGTTATTATGGAAGAGAGCATAGGGCCATCA ACAAAGGCTATATGTGATGCGGCTAAAGAAGTTGGTCTTCCTATAATTACAGTAGGAAACGAAAATTTATACCAAATAGG TTATGGAAAAGCAGGAAAGAGGTTTAGTGCCACTATTGGCAATAATACAAAGGGAATTGCTATAGATATAGCCTGTGATA AAATGCTTACAAAAGAACTTTTAGATATACAGAACTTGCCTGTTGCCAGAGGAGAAAAGGTATTTAACACAATACATCTT ATTGAAGCGGTTAATAGAATTGGATATCCTGTAGTATTAAAACCACAATGGGGAAGCAAGGGGAATGGAGTTTTTGTAAA TATAAATAGTGAAAAAGAACTTTTAAGAGCCTATGCTGAAATCACAAAAGAATGTAAAGAAATAATGATAGAAGAATATA AGGTTGGAAATGACTATAGAGTAATGTTAGTGGATTATAAGGTAGTAGCAGTTTCCTTAAGAAAACCTCCATATATAACA GGTGATGGAGTTAGAAATATTAGAGATTTAATAGAAGCTATGAATGCTAATCCACTAAGAGGAGAAGGGCATGAAAAACC TTTAACAAAGGTTAAAATAGATGAAGAATTAATAAATAGATTAAGCAAGCTAGGATATTCTTTAAACTCAGTTTTAGAGT ATGGAGAAAAAGTTACCTTAAGAGGAAATGCAAATCTTTCTACAGGTGGAAGTGCTGAGGACTATACTGATTTAATATGT AAAGAAAATATTGAAATTTGTGAAAGAGCAGCTAAAACTATTGGATTAGATATATGTGGTATAGATATTTGTGCAAAATC GATAGCAGAACCTCTATATGAAAATGATGGAATAATCTTAGAAGTTAACGCGGCCCCAGGAATAAGAATGCATCATTTTC CTACTATAGGCAAAGAAAGAAATGTAGGAAGAAAAATTTTAGATAATATGTTTAAAGAGAATTATTCTAATATTCCTGTT ATTTCAGTTACAGGAACTAATGGAAAAACTACTACAGTAAGATTAATATCTTATGTTTTAAATTTAATTGGATTTAATGT AGGGTGTACAACGACTTCTGGAGTTAAAATAGGAAATAGGTATATACATAAAGGTGATGATACAGGATATAATAGTGCAA GGTCTGTATTATTAAATCCAGAGGTTGATATAGCAGTTTTAGAAAGTGCAAGAGGTGGCTTGGTAAGAAGAGGATTAGCT TATGATTTAGCAGATGTAGGAGTAATAACTAACATAAGAGAGGATCATTTAGGAATAGATGGAATAAATGATATGGAAGA TTTGTCTTTTGTAAAATCTTTAGTTGGTGAAGCTGTAAAAGATAATGGATATTCAGTTATAAATGCTGATGATGAATGGA GCTTAAAAGTTTTAGATAGAATTAAAAAGCCTAAAATATTATTTTCAATGAATGAAAATAATAAATACCTACAGGAAAAT TTAAAACTGGGAAATCCTATTGTGTTTTATAGGGATGAAACTATATATGTAAAAAATAGAGGTAAAGAATACAAAATAGC TTCTGCAGAGGAAATGAAGTTTACAATGAATGGTAAACTAAAGCATAACATAGAGAATGCTATGGCAGCTTGTGCAGCCT TAGTTGGAATAGAAGTTGATTATTGCATCATATCTAAAGGACTAAAACAGTTTAAATCTTGTGAAGAAGACAACAGAGGA AGATTTAATATGTTTGACGTTAATGGTATAAATGTAATATTAGATTATGCTCATAATATTGATGGATACAAGGTGGTTAT AGACTCTCTTAAAAATCTTGGTTTAAAAAATATAACAGGAATAATAGGGGTTCCTGGAGATAGAGATTTAAATACTATGA AAGAAGTTGGTAGAATAAGTGGAGACTTTTTTGATTCCATAGTTATAAAAGAGGATAAAGACTTAAGAGGAAAAGATAAA GGTGAGGTTGCTAGTATAATAAACGAAGGTGTATTATCATCAAATAGAAAAGACTTAAATGTAAAAATCATATTGTCGGA GGAAGAAGCACTTAGAGAAACTTTAAAGTTAGCTAAAAAAGGTGAAACTATTATAATGTTTTTTGAAGATTACGAATCTC TATATGATATAATAAATGAATTTAAAAATAAGGGCACAAAAGATTTAAAAAGTGCTAGCATATAG
Upstream 100 bases:
>100_bases GAGGTATTTAGTATATTTAATATAAAGTTACATGTATTAACAGCAGGCAAAAAAATGAATTTATCAACTAGGGTGCCTTT TGAGGAGGAAAGAAATAAAA
Downstream 100 bases:
>100_bases TAAAAATAATTTAAAAGAGAAATCTTCTAGTAGGTAATTTAGAAGATTTCTCTTTATTTTAATTAACTCTTTATGTTTTT AGAAGAAAATAATATAATTA
Product: cyanophycin synthetase
Products: NA
Alternate protein names: Cyanophycin synthase [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKINNQRIFEGRNIYSHRKCIRLDVDLEGYCETPTKDIDGFNERLLSYVPELYTHRCGIDIEGGFVQRLKEGTYLAHVCE HTIIGIHNKLGIDIKYGKAREIKDDFYYIIFEYKLKRTAILIAELAIDLINSIIKKKDINFDERIEIINRVIMEESIGPS TKAICDAAKEVGLPIITVGNENLYQIGYGKAGKRFSATIGNNTKGIAIDIACDKMLTKELLDIQNLPVARGEKVFNTIHL IEAVNRIGYPVVLKPQWGSKGNGVFVNINSEKELLRAYAEITKECKEIMIEEYKVGNDYRVMLVDYKVVAVSLRKPPYIT GDGVRNIRDLIEAMNANPLRGEGHEKPLTKVKIDEELINRLSKLGYSLNSVLEYGEKVTLRGNANLSTGGSAEDYTDLIC KENIEICERAAKTIGLDICGIDICAKSIAEPLYENDGIILEVNAAPGIRMHHFPTIGKERNVGRKILDNMFKENYSNIPV ISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLA YDLADVGVITNIREDHLGIDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQEN LKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLKQFKSCEEDNRG RFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK GEVASIINEGVLSSNRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFKNKGTKDLKSASI
Sequences:
>Translated_874_residues MKINNQRIFEGRNIYSHRKCIRLDVDLEGYCETPTKDIDGFNERLLSYVPELYTHRCGIDIEGGFVQRLKEGTYLAHVCE HTIIGIHNKLGIDIKYGKAREIKDDFYYIIFEYKLKRTAILIAELAIDLINSIIKKKDINFDERIEIINRVIMEESIGPS TKAICDAAKEVGLPIITVGNENLYQIGYGKAGKRFSATIGNNTKGIAIDIACDKMLTKELLDIQNLPVARGEKVFNTIHL IEAVNRIGYPVVLKPQWGSKGNGVFVNINSEKELLRAYAEITKECKEIMIEEYKVGNDYRVMLVDYKVVAVSLRKPPYIT GDGVRNIRDLIEAMNANPLRGEGHEKPLTKVKIDEELINRLSKLGYSLNSVLEYGEKVTLRGNANLSTGGSAEDYTDLIC KENIEICERAAKTIGLDICGIDICAKSIAEPLYENDGIILEVNAAPGIRMHHFPTIGKERNVGRKILDNMFKENYSNIPV ISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLA YDLADVGVITNIREDHLGIDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQEN LKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLKQFKSCEEDNRG RFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK GEVASIINEGVLSSNRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFKNKGTKDLKSASI >Mature_874_residues MKINNQRIFEGRNIYSHRKCIRLDVDLEGYCETPTKDIDGFNERLLSYVPELYTHRCGIDIEGGFVQRLKEGTYLAHVCE HTIIGIHNKLGIDIKYGKAREIKDDFYYIIFEYKLKRTAILIAELAIDLINSIIKKKDINFDERIEIINRVIMEESIGPS TKAICDAAKEVGLPIITVGNENLYQIGYGKAGKRFSATIGNNTKGIAIDIACDKMLTKELLDIQNLPVARGEKVFNTIHL IEAVNRIGYPVVLKPQWGSKGNGVFVNINSEKELLRAYAEITKECKEIMIEEYKVGNDYRVMLVDYKVVAVSLRKPPYIT GDGVRNIRDLIEAMNANPLRGEGHEKPLTKVKIDEELINRLSKLGYSLNSVLEYGEKVTLRGNANLSTGGSAEDYTDLIC KENIEICERAAKTIGLDICGIDICAKSIAEPLYENDGIILEVNAAPGIRMHHFPTIGKERNVGRKILDNMFKENYSNIPV ISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLA YDLADVGVITNIREDHLGIDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQEN LKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLKQFKSCEEDNRG RFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDK GEVASIINEGVLSSNRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIINEFKNKGTKDLKSASI
Specific function: Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) [H]
COG id: COG1181
COG function: function code M; D-alanine-D-alanine ligase and related ATP-grasp enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013651 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR011810 - InterPro: IPR004101 - InterPro: IPR013221 [H]
Pfam domain/function: PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; PF08443 RimK [H]
EC number: =6.3.2.29; =6.3.2.30 [H]
Molecular weight: Translated: 97868; Mature: 97868
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS50975 ATP_GRASP ; PS01011 FOLYLPOLYGLU_SYNT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINNQRIFEGRNIYSHRKCIRLDVDLEGYCETPTKDIDGFNERLLSYVPELYTHRCGID CCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC IEGGFVQRLKEGTYLAHVCEHTIIGIHNKLGIDIKYGKAREIKDDFYYIIFEYKLKRTAI CCCHHHHHHHCCCHHHHHHHHHHEEECCCCCEEEECCCCCCCCCCEEEEEEEEEHHHHHH LIAELAIDLINSIIKKKDINFDERIEIINRVIMEESIGPSTKAICDAAKEVGLPIITVGN HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECC ENLYQIGYGKAGKRFSATIGNNTKGIAIDIACDKMLTKELLDIQNLPVARGEKVFNTIHL CCEEEECCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHH IEAVNRIGYPVVLKPQWGSKGNGVFVNINSEKELLRAYAEITKECKEIMIEEYKVGNDYR HHHHHHCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE VMLVDYKVVAVSLRKPPYITGDGVRNIRDLIEAMNANPLRGEGHEKPLTKVKIDEELINR EEEEEEEEEEEEECCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHH LSKLGYSLNSVLEYGEKVTLRGNANLSTGGSAEDYTDLICKENIEICERAAKTIGLDICG HHHHCCCHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCEEEH IDICAKSIAEPLYENDGIILEVNAAPGIRMHHFPTIGKERNVGRKILDNMFKENYSNIPV HHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCE ISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARSVLLNP EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEECCCCCCCCCCCEEEECC EVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKSLVGEAVK CCCEEEECCCCCCHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHH DNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQENLKLGNPIVFYRDETIYVKNR CCCCEEEECCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCEEEEECCEEEECCC GKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLKQFKSCEEDNRG CCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC RFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLKNITGIIGVPGDRDLNTMKEVGRIS CEEEEECCCCEEEEEHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCC GDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKDLNVKIILSEEEALRETLKLAKK CHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC GETIIMFFEDYESLYDIINEFKNKGTKDLKSASI CCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHCCC >Mature Secondary Structure MKINNQRIFEGRNIYSHRKCIRLDVDLEGYCETPTKDIDGFNERLLSYVPELYTHRCGID CCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC IEGGFVQRLKEGTYLAHVCEHTIIGIHNKLGIDIKYGKAREIKDDFYYIIFEYKLKRTAI CCCHHHHHHHCCCHHHHHHHHHHEEECCCCCEEEECCCCCCCCCCEEEEEEEEEHHHHHH LIAELAIDLINSIIKKKDINFDERIEIINRVIMEESIGPSTKAICDAAKEVGLPIITVGN HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECC ENLYQIGYGKAGKRFSATIGNNTKGIAIDIACDKMLTKELLDIQNLPVARGEKVFNTIHL CCEEEECCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHH IEAVNRIGYPVVLKPQWGSKGNGVFVNINSEKELLRAYAEITKECKEIMIEEYKVGNDYR HHHHHHCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE VMLVDYKVVAVSLRKPPYITGDGVRNIRDLIEAMNANPLRGEGHEKPLTKVKIDEELINR EEEEEEEEEEEEECCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHH LSKLGYSLNSVLEYGEKVTLRGNANLSTGGSAEDYTDLICKENIEICERAAKTIGLDICG HHHHCCCHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCEEEH IDICAKSIAEPLYENDGIILEVNAAPGIRMHHFPTIGKERNVGRKILDNMFKENYSNIPV HHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCE ISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGVKIGNRYIHKGDDTGYNSARSVLLNP EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEECCCCCCCCCCCEEEECC EVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLGIDGINDMEDLSFVKSLVGEAVK CCCEEEECCCCCCHHHCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHH DNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQENLKLGNPIVFYRDETIYVKNR CCCCEEEECCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCEEEEECCEEEECCC GKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIEVDYCIISKGLKQFKSCEEDNRG CCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC RFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLKNITGIIGVPGDRDLNTMKEVGRIS CEEEEECCCCEEEEEHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCC GDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKDLNVKIILSEEEALRETLKLAKK CHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC GETIIMFFEDYESLYDIINEFKNKGTKDLKSASI CCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11131019 [H]