Click here to switch to the map view.

The map label for this gene is atpD

Identifier: 18311172

GI number: 18311172

Start: 2512117

End: 2512656

Strand: Reverse

Name: atpD

Synonym: CPE2190

Alternate gene names: 18311172

Gene position: 2512656-2512117 (Counterclockwise)

Preceding gene: 18311173

Following gene: 18311171

Centisome position: 82.89

GC content: 26.85

Gene sequence:

>540_bases
ATGTATGAATATTTAGATCGTAGATATGCCTTAGCTCTATATGAAGTTGCAGAAGAAAAGAATAAAGTTGAAGAATACTT
AAATGATTTAAGAGAAATCTGTGATATTATTTATGGAAATAATGAACTTTATGAAATAATAAAACATCCTCAAATTAGTA
CTGTAAGAAAGAAAAAGACTTTCAGAAACATATTTGAAGGAAAAATAGATGATGAGTTACTTTCATTTTTAATGGTTCTT
ATAGAAAAAGATAGAATACTTTATCTAAGAGAAAAATTAAAAGAAATGGAAAAAATTCATCTAGAGAGAAACAATACTTT
ACTTGCAGAGGTAAAAAGTGTTGTTCCATTAACAGAAGATGAAGTTACAAGACTTGTAGCAAAGTTAGAAAATAAATACT
CAAAGAAAATTTTATTAAAGCAAGAAATAGATAAAAGTATCATTGGAGGACTTTATGTCAGAGTTGGCGATGATGTTATA
GATGGTACTGTTAAATCTAGACTTGACGATATGAAACAGATAATGCTTAAGAGAGAATAG

Upstream 100 bases:

>100_bases
TTTCTGTAATGCTTTCAGAGAAAGCACTTGGAGAATCTATTGATGAATCTAAACATAGAGAATTAATAAATGATTTTATT
GAAAAGGTAGGTATCTAATT

Downstream 100 bases:

>100_bases
AGGTGAGTCTATGCATATTAAACCAGAAGAAATAACTTCTATAATCAAGAATGAAATAAAAAACTATGAAAAAGAGTTAG
AAACTGTTGATTCTGGTACT

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MYEYLDRRYALALYEVAEEKNKVEEYLNDLREICDIIYGNNELYEIIKHPQISTVRKKKTFRNIFEGKIDDELLSFLMVL
IEKDRILYLREKLKEMEKIHLERNNTLLAEVKSVVPLTEDEVTRLVAKLENKYSKKILLKQEIDKSIIGGLYVRVGDDVI
DGTVKSRLDDMKQIMLKRE

Sequences:

>Translated_179_residues
MYEYLDRRYALALYEVAEEKNKVEEYLNDLREICDIIYGNNELYEIIKHPQISTVRKKKTFRNIFEGKIDDELLSFLMVL
IEKDRILYLREKLKEMEKIHLERNNTLLAEVKSVVPLTEDEVTRLVAKLENKYSKKILLKQEIDKSIIGGLYVRVGDDVI
DGTVKSRLDDMKQIMLKRE
>Mature_179_residues
MYEYLDRRYALALYEVAEEKNKVEEYLNDLREICDIIYGNNELYEIIKHPQISTVRKKKTFRNIFEGKIDDELLSFLMVL
IEKDRILYLREKLKEMEKIHLERNNTLLAEVKSVVPLTEDEVTRLVAKLENKYSKKILLKQEIDKSIIGGLYVRVGDDVI
DGTVKSRLDDMKQIMLKRE

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=179, Percent_Identity=27.3743016759777, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_CLOP1 (Q0TNC1)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696869.1
- ProteinModelPortal:   Q0TNC1
- STRING:   Q0TNC1
- GeneID:   4203059
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_2455
- TIGR:   CPF_2455
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   NANKDFV
- ProtClustDB:   PRK05758
- BioCyc:   CPER195103:CPF_2455-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 21274; Mature: 21274

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEYLDRRYALALYEVAEEKNKVEEYLNDLREICDIIYGNNELYEIIKHPQISTVRKKKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHH
FRNIFEGKIDDELLSFLMVLIEKDRILYLREKLKEMEKIHLERNNTLLAEVKSVVPLTED
HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
EVTRLVAKLENKYSKKILLKQEIDKSIIGGLYVRVGDDVIDGTVKSRLDDMKQIMLKRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYEYLDRRYALALYEVAEEKNKVEEYLNDLREICDIIYGNNELYEIIKHPQISTVRKKKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHH
FRNIFEGKIDDELLSFLMVLIEKDRILYLREKLKEMEKIHLERNNTLLAEVKSVVPLTED
HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
EVTRLVAKLENKYSKKILLKQEIDKSIIGGLYVRVGDDVIDGTVKSRLDDMKQIMLKRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA