Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is yhgN [H]
Identifier: 182682643
GI number: 182682643
Start: 2404860
End: 2405456
Strand: Reverse
Name: yhgN [H]
Synonym: XfasM23_2133
Alternate gene names: 182682643
Gene position: 2405456-2404860 (Counterclockwise)
Preceding gene: 182682644
Following gene: 182682640
Centisome position: 94.86
GC content: 51.93
Gene sequence:
>597_bases ATGACGATTATGTCTGCTGCGTTGTTACTGTTCCTGATTCTTGACCCATTGGGCAACATCCCGGTGTTTCTCAGCGTACT CAAACCATTGCCTGCCCAACGGCAACGCGTGGTACTGGCGCGTGAATTGCTGATTGCGCTGATGGTACTCATGGGTTTCC TATGGGGGGGCAAATACGTCTTGGAGTTGATGCATTTGCGACAGGAGTCGGTATCGATTGCCGGAGGCATCGTCTTATTC CTCATTGGTATCCGGATGATCTTTCCTCGGCCAGAAGGATTGATGGGGGAAATCCCTGAGGGAGAGCCTTTTATCGTGCC ATTAGCAATCCCATTGGTTGCTGGTCCATCGGGCATGGCTGCAGTGATGCTGATGGGGAGCAACGAGCCGGCCCGGTTGT GGGATTGGAACTGTGCGTTGTTGCTGGCTTGGGGCGGAGCAGCAGCGATCTTATTTTCTGCGACGTTCTTGTACAAACTG TTGGGCCATCGTGTGTTGACAGCATTGGAGCGCTTAATGGGAATGTTGTTGGTGGCAATCTCGGTGCAAATGTTTATGGA CGGAATCAGCACATACCTCAAAGCGTCAATGCATTGA
Upstream 100 bases:
>100_bases TGCCAAGGTTGATCCTGCCGAATAGGCATCGGCCTGTCTTGCATTATTCAGTGTTTTTATCGAGTGTTTTACACCGTCGA GTGATCTGGAGTTCCATCCC
Downstream 100 bases:
>100_bases TAGCCGCTGCCTTATGTCAGCAGACAATGGAGGCTTGAGGTAACGTGATCGCTTCCGACGGTACAGCGTCATTGATCCAC TAAATGCCATTGATGCGTTT
Product: multiple antibiotic resistance (MarC)-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MTIMSAALLLFLILDPLGNIPVFLSVLKPLPAQRQRVVLARELLIALMVLMGFLWGGKYVLELMHLRQESVSIAGGIVLF LIGIRMIFPRPEGLMGEIPEGEPFIVPLAIPLVAGPSGMAAVMLMGSNEPARLWDWNCALLLAWGGAAAILFSATFLYKL LGHRVLTALERLMGMLLVAISVQMFMDGISTYLKASMH
Sequences:
>Translated_198_residues MTIMSAALLLFLILDPLGNIPVFLSVLKPLPAQRQRVVLARELLIALMVLMGFLWGGKYVLELMHLRQESVSIAGGIVLF LIGIRMIFPRPEGLMGEIPEGEPFIVPLAIPLVAGPSGMAAVMLMGSNEPARLWDWNCALLLAWGGAAAILFSATFLYKL LGHRVLTALERLMGMLLVAISVQMFMDGISTYLKASMH >Mature_197_residues TIMSAALLLFLILDPLGNIPVFLSVLKPLPAQRQRVVLARELLIALMVLMGFLWGGKYVLELMHLRQESVSIAGGIVLFL IGIRMIFPRPEGLMGEIPEGEPFIVPLAIPLVAGPSGMAAVMLMGSNEPARLWDWNCALLLAWGGAAAILFSATFLYKLL GHRVLTALERLMGMLLVAISVQMFMDGISTYLKASMH
Specific function: Unknown
COG id: COG2095
COG function: function code U; Multiple antibiotic transporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0056 (marC) family [H]
Homologues:
Organism=Escherichia coli, GI1789842, Length=193, Percent_Identity=52.8497409326425, Blast_Score=195, Evalue=2e-51, Organism=Escherichia coli, GI1787494, Length=200, Percent_Identity=29, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787809, Length=207, Percent_Identity=27.536231884058, Blast_Score=65, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002771 [H]
Pfam domain/function: PF01914 MarC [H]
EC number: NA
Molecular weight: Translated: 21615; Mature: 21484
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 7.6 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 7.1 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIMSAALLLFLILDPLGNIPVFLSVLKPLPAQRQRVVLARELLIALMVLMGFLWGGKYV CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH LELMHLRQESVSIAGGIVLFLIGIRMIFPRPEGLMGEIPEGEPFIVPLAIPLVAGPSGMA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCE AVMLMGSNEPARLWDWNCALLLAWGGAAAILFSATFLYKLLGHRVLTALERLMGMLLVAI EEEEECCCCCCEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVQMFMDGISTYLKASMH HHHHHHHHHHHHHHHCCC >Mature Secondary Structure TIMSAALLLFLILDPLGNIPVFLSVLKPLPAQRQRVVLARELLIALMVLMGFLWGGKYV HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH LELMHLRQESVSIAGGIVLFLIGIRMIFPRPEGLMGEIPEGEPFIVPLAIPLVAGPSGMA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCE AVMLMGSNEPARLWDWNCALLLAWGGAAAILFSATFLYKLLGHRVLTALERLMGMLLVAI EEEEECCCCCCEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVQMFMDGISTYLKASMH HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]