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The map label for this gene is sodA [H]

Identifier: 182682604

GI number: 182682604

Start: 2354541

End: 2355152

Strand: Reverse

Name: sodA [H]

Synonym: XfasM23_2092

Alternate gene names: 182682604

Gene position: 2355152-2354541 (Counterclockwise)

Preceding gene: 182682607

Following gene: 182682602

Centisome position: 92.88

GC content: 48.69

Gene sequence:

>612_bases
ATGGCTTACACCCTTCCCATCCTGCCTTACGCTTACGATGCGTTGGAACCACACATTGATGCCCAGACAATGGAAATCCA
TTACACCAAGCACCATGCCACCTATATCAATAATCTTAATGCTGCGTTGGAAGGAACGGAGTACGCGGATTTACCCATTG
AAGAATTGCTCCGTAACTTAAAAAGTTTGCCGGAAAGCTTGCAGGTTCCAGTACGTAACAACGGCGGTGGTCACGCCAAT
CATTCACTGTTCTGGACGGTGATGGCTCAGGATGGCGGCGGCAAGCCGAAAGGAGAGGTTGCTAAAGCGATTGACCAGCA
GCTGGGTGGTTTTGAGACATTTAAAGATGCTTTTACCAAAGCTGCACTCAGTCGTTTCGGGTCCGGTTGGTCATTGCTAA
ACGTCACTCCGAGCAAAACTTTGGTGGTTGAAAGCAGCGCTAATCAGGACAGCCCTCTATGCGATGGTAAGACGTCTATT
TTGTGCTTGGATGTGTGGGAACATGCATATTACTTGCACTATCAGAATCGTCGTGCGGATTACGTTAATGCGTTCTACAA
CGTGATCAACTGGGATGAGGTTGAGCGCCGCTATGTGGTTGCGATGAGCTGA

Upstream 100 bases:

>100_bases
GGGTGTGGTCTCCCTATGGTTTTCCTTGGTAGCTGTGCCTATCGTCTTTACCATTTACCATAAACGTCGGCATCCGCCGG
TATGACTTCAGGAGAAACGC

Downstream 100 bases:

>100_bases
TCCATTCCAAAGAGAGTTTTGGGGTTTTCCCAGGAGCCGGGAGCGTGCGTTTCCGGCTCTTTTCATGTCGCTATGGGATA
TTAACGTTGCTGCTTTTATC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAYTLPILPYAYDALEPHIDAQTMEIHYTKHHATYINNLNAALEGTEYADLPIEELLRNLKSLPESLQVPVRNNGGGHAN
HSLFWTVMAQDGGGKPKGEVAKAIDQQLGGFETFKDAFTKAALSRFGSGWSLLNVTPSKTLVVESSANQDSPLCDGKTSI
LCLDVWEHAYYLHYQNRRADYVNAFYNVINWDEVERRYVVAMS

Sequences:

>Translated_203_residues
MAYTLPILPYAYDALEPHIDAQTMEIHYTKHHATYINNLNAALEGTEYADLPIEELLRNLKSLPESLQVPVRNNGGGHAN
HSLFWTVMAQDGGGKPKGEVAKAIDQQLGGFETFKDAFTKAALSRFGSGWSLLNVTPSKTLVVESSANQDSPLCDGKTSI
LCLDVWEHAYYLHYQNRRADYVNAFYNVINWDEVERRYVVAMS
>Mature_202_residues
AYTLPILPYAYDALEPHIDAQTMEIHYTKHHATYINNLNAALEGTEYADLPIEELLRNLKSLPESLQVPVRNNGGGHANH
SLFWTVMAQDGGGKPKGEVAKAIDQQLGGFETFKDAFTKAALSRFGSGWSLLNVTPSKTLVVESSANQDSPLCDGKTSIL
CLDVWEHAYYLHYQNRRADYVNAFYNVINWDEVERRYVVAMS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=45.5445544554455, Blast_Score=181, Evalue=4e-46,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=45.5445544554455, Blast_Score=181, Evalue=4e-46,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=37.1287128712871, Blast_Score=126, Evalue=1e-29,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=55.5555555555556, Blast_Score=230, Evalue=6e-62,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=42.8571428571429, Blast_Score=175, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=207, Percent_Identity=42.0289855072464, Blast_Score=153, Evalue=5e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=206, Percent_Identity=40.7766990291262, Blast_Score=148, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=205, Percent_Identity=42.4390243902439, Blast_Score=147, Evalue=8e-37,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=40.1960784313725, Blast_Score=142, Evalue=1e-34,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22769; Mature: 22638

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYTLPILPYAYDALEPHIDAQTMEIHYTKHHATYINNLNAALEGTEYADLPIEELLRNL
CCEECCCCHHHHHHCCCCCCCEEEEEEEEHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
KSLPESLQVPVRNNGGGHANHSLFWTVMAQDGGGKPKGEVAKAIDQQLGGFETFKDAFTK
HCCHHHHCCCEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AALSRFGSGWSLLNVTPSKTLVVESSANQDSPLCDGKTSILCLDVWEHAYYLHYQNRRAD
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHH
YVNAFYNVINWDEVERRYVVAMS
HHHHHHHHCCCCCCCCEEEEEEC
>Mature Secondary Structure 
AYTLPILPYAYDALEPHIDAQTMEIHYTKHHATYINNLNAALEGTEYADLPIEELLRNL
CEECCCCHHHHHHCCCCCCCEEEEEEEEHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHH
KSLPESLQVPVRNNGGGHANHSLFWTVMAQDGGGKPKGEVAKAIDQQLGGFETFKDAFTK
HCCHHHHCCCEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AALSRFGSGWSLLNVTPSKTLVVESSANQDSPLCDGKTSILCLDVWEHAYYLHYQNRRAD
HHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHH
YVNAFYNVINWDEVERRYVVAMS
HHHHHHHHCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8810073 [H]