Click here to switch to the map view.

The map label for this gene is yfbS [C]

Identifier: 182682494

GI number: 182682494

Start: 2220202

End: 2222064

Strand: Reverse

Name: yfbS [C]

Synonym: XfasM23_1981

Alternate gene names: 182682494

Gene position: 2222064-2220202 (Counterclockwise)

Preceding gene: 182682495

Following gene: 182682493

Centisome position: 87.63

GC content: 52.39

Gene sequence:

>1863_bases
ATGGATACTGCTTTGACGTTGACCAATGACATGAAGCTGGTGCTCGGTTTGGTCGGTTTTACGATGGCAATGTTTGTTTG
GGAGCGGATACGCGCTGATGTCGTGGCGTTGATTGTGTTAGTGGTGCTTGGGACAACGGGATTGATCCCTCCGGAAGAGC
TTTTCGGCGGTTTCTCCGGTAATGCCGTGATGAGCATCATCGCTACGGCGATTTTGGGTGCGGGACTGGAACGTACCGGT
GCGTTGAATCGCTTAGCGGCTTGGCTGTTGCGTCGCTCGCATGGCAGTGAACGGCGGTTGTTGTTGATCACGTTGGGGGT
TGCCGGACTCAACTCTCCATTTATGCAAAACACGTCGGTGATGGCGTTATATATGCCGGTTGCTGCGCGTTTAGCGGCAC
GTACCGGGCTGACGCTACAGCGATTATTGCTACCGATTGCTGCGATGATCGTCATGGGTGGTGCGTTGACCATGGTCGGT
AATTCGCCGTTGATTTTGCTAAATGATTTGTTGCAATCGGCGAATAACAATTTGCCTTCGGGAATCGCCACTATTGAGCC
GTTGCGCATGTTTGCCCCGCTGCCGATCGGCGTGGCATTACTGATTGCGGCGTTGCTTTACTTCTTTTTTTATGGTGACC
GCAAGCTGATTCAAGAGGAGCAGTTGGCTAACGAAGAGGTGACTGCGGCGCGGCACGAGAGTTATTTTGCGCGTACCTAC
GGCATTGATGCCGATGTCTTTGAGTTGGTGGTCAATGCGGAGAGTCCACTGGTCGGTATGACTGTAGGTGAGGCTGAAAC
CATTCAGGGTGCGCCGCTGTTATTGGCATTGAAAACGGGTAACGACACGCGCTTGAGTCCGCCAGTGGACATGCGTATCT
GGGTGGGGAGTGTGCTTGGTGCAATGGGGCCACGTCAGCAGGTGGCTGGTTTTGCAAAGAATCAATTGTTGAATGTGTCC
TCGCGATTGCGTCACCTTGGTGACTTGTTCAACCCTGCATGTGCTGGGATTTGCGAGGTGGTGATCCCGCCCAATTCGCG
TTTTATTGATAAAACCTCGACCGAGTTGCGTTTGCGCAAACAAATGGGGATTAGTTTGCTGGCGATCAATCGTGATAAGA
ATGTGATTCGGGAAGACGTGCGTAATGTGCCGCTGCGTGCCGGGGACATGCTGGTATTGCACAGTCTCTGGCAGGATTTA
GCGCAAGCGGCAGAAAGCCGGGATTTTGTCCCGGTCACTGATTACCCTAAGGGTGAGCAGCGTCCGCATAAGTTCAAGAT
TGCGATGGCAATCTTTGCATTCACTATCTTGATTGCACTGACTGCCAAGTTGCCGGTGGCGTTGACTTTGCTGACCGGTG
TGGCTTGTATGCTCGTTACTGGGGTGATCCGCATGGACGAGGCCTATACTGCAATCAGTTGGAAAACGATTTTCATGATG
GCCGGATTGATCCCGCTGGGTTGGGCGATGGATAGCAGCGGCACTGCGGCTTGGGTGGCTGGACACACGATTGACCGGCT
ACCGCATGGAATGCCGATATGGGCGATCGAGTTGGCTATGGCACTTTTGACGACGGCGTTTTCGCTGGTGATCAGTCACG
TTGGTGCAACGATTGTGATGGTTCCGATTGCGGTTAACGTCGCGTTGGCAGCAAATGGCAATCCGACGGCATTTGGCCTG
ATTGTGGCGCTAGCAGCGTCAAACAATCTGATGACGGTTTCCAATCCAGTAATTTCAATGGTGACTGGACCTGCCAATTA
TCAGCCACGCGAATTATGGAAGGTGGGCGGACCATTGTCTCTGATTTATATTGTGGTGATGGTGGTGATGATTAATTTAA
TGTCTCAATGGGGTGTGCTTTGA

Upstream 100 bases:

>100_bases
GCGCTTTGAGAGGCGTGGCCAAAATCTGGGCCACAGAGTCTGGAATCTGCTCTACGATCGGGTCTGAATTCTGCCACTGG
GATCACTACATCATCACTCC

Downstream 100 bases:

>100_bases
ATGTGTCACCTGCATCGCTGAGTCATGATGGTGCGATTGTCTTTATGTAAGTTATTTTCTGGGGTTGATAACAGATATTT
TCGTATCGCAGTATTTGTCA

Product: TrkA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 620

Protein sequence:

>620_residues
MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSGNAVMSIIATAILGAGLERTG
ALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSVMALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVG
NSPLILLNDLLQSANNNLPSGIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY
GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLGAMGPRQQVAGFAKNQLLNVS
SRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRKQMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDL
AQAAESRDFVPVTDYPKGEQRPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM
AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVMVPIAVNVALAANGNPTAFGL
IVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLSLIYIVVMVVMINLMSQWGVL

Sequences:

>Translated_620_residues
MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSGNAVMSIIATAILGAGLERTG
ALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSVMALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVG
NSPLILLNDLLQSANNNLPSGIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY
GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLGAMGPRQQVAGFAKNQLLNVS
SRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRKQMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDL
AQAAESRDFVPVTDYPKGEQRPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM
AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVMVPIAVNVALAANGNPTAFGL
IVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLSLIYIVVMVVMINLMSQWGVL
>Mature_620_residues
MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSGNAVMSIIATAILGAGLERTG
ALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSVMALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVG
NSPLILLNDLLQSANNNLPSGIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY
GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLGAMGPRQQVAGFAKNQLLNVS
SRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRKQMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDL
AQAAESRDFVPVTDYPKGEQRPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM
AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVMVPIAVNVALAANGNPTAFGL
IVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLSLIYIVVMVVMINLMSQWGVL

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=635, Percent_Identity=27.4015748031496, Blast_Score=181, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898
- InterPro:   IPR006037 [H]

Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 66732; Mature: 66732

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSG
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC
NAVMSIIATAILGAGLERTGALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC
MALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVGNSPLILLNDLLQSANNNLPS
EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCC
GIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHC
GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLG
CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
AMGPRQQVAGFAKNQLLNVSSRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCHHHHHHHH
QMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDLAQAAESRDFVPVTDYPKGEQ
HCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
RPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVM
HHHHHHCEEECCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEE
VPIAVNVALAANGNPTAFGLIVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLS
EEEHEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCHHHHHHCCCHHH
LIYIVVMVVMINLMSQWGVL
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDTALTLTNDMKLVLGLVGFTMAMFVWERIRADVVALIVLVVLGTTGLIPPEELFGGFSG
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC
NAVMSIIATAILGAGLERTGALNRLAAWLLRRSHGSERRLLLITLGVAGLNSPFMQNTSV
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC
MALYMPVAARLAARTGLTLQRLLLPIAAMIVMGGALTMVGNSPLILLNDLLQSANNNLPS
EEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCC
GIATIEPLRMFAPLPIGVALLIAALLYFFFYGDRKLIQEEQLANEEVTAARHESYFARTY
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHC
GIDADVFELVVNAESPLVGMTVGEAETIQGAPLLLALKTGNDTRLSPPVDMRIWVGSVLG
CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
AMGPRQQVAGFAKNQLLNVSSRLRHLGDLFNPACAGICEVVIPPNSRFIDKTSTELRLRK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCCCCCCHHHHHHHH
QMGISLLAINRDKNVIREDVRNVPLRAGDMLVLHSLWQDLAQAAESRDFVPVTDYPKGEQ
HCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
RPHKFKIAMAIFAFTILIALTAKLPVALTLLTGVACMLVTGVIRMDEAYTAISWKTIFMM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AGLIPLGWAMDSSGTAAWVAGHTIDRLPHGMPIWAIELAMALLTTAFSLVISHVGATIVM
HHHHHHCEEECCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHEEE
VPIAVNVALAANGNPTAFGLIVALAASNNLMTVSNPVISMVTGPANYQPRELWKVGGPLS
EEEHEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCHHHHHHCCCHHH
LIYIVVMVVMINLMSQWGVL
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]