| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is lptD [H]
Identifier: 182682449
GI number: 182682449
Start: 2164913
End: 2167291
Strand: Reverse
Name: lptD [H]
Synonym: XfasM23_1936
Alternate gene names: 182682449
Gene position: 2167291-2164913 (Counterclockwise)
Preceding gene: 182682452
Following gene: 182682448
Centisome position: 85.47
GC content: 52.12
Gene sequence:
>2379_bases GTGTATCGAGTTCTACGTTTATTACCCCTGCCTTTAAGTGTTGCGATCTCTTTGTCGGCGTTGGCAGACGAAAAACCGCC TAATTGGGGGTTGTGCCCCGCGACGTTGCCGTTACAGGGTTTTGAGCAGGCCCCCGGCATGGATAAGCATGTTGTTCAGA GTCGCCCTCAATTGCCGACCAACATTGAGGGTGACACGCTCACTGGTACCGCACGCACACCGCTGTACCAGGGCAATGTT TTGATGGCGCGTGGCGATCAGCTCTTGGGTGCCGATAGTGTACGGATGGATACCGAGACGGACAGTTATGTTGCTGAGGG GCATGTCCGTTACCAGGATTCTTCAATCTTGGTCGTTGCCGATCGTGCTGAGGGCAACCAGGATACGGATGTTCATAAGA TCAGCAACATTCAATATCAGTTGATAGGTCGGCGTGGCAATGGTGTTGCTAAGTCTGTTGATATCCACGGTCAGGTTGGA CAAACGCATGAGGCCACCTATACCACCTGCGATCCATCGCAAGCGATCTGGCGTCTCCGTGCTCCCGAAATTGATGTGGA TAACGTGGAAGGTTTCGGCGTTGCGCGTCATGCGGTGTTTGAGGTTGGTCAATGGCCGGTGTTGTATCTGCCTTGGTTTA AATTTCCCATAGATAGCCGCCGCCAAACGGGATTGCTTTACCCGCAGTTAGGGTATTCCGGCCGCAATGGTTTTGACTAT GCGCAGCCGATCTATCTCAATCTGGCACCGAACTATGACGCCACGCTGTATCCGCGTTACATGCAGAAGCGTGGTTTCAT GATCGATACCGAATTTCGCTATTTATACGATGACGGCAAGTGGCAGACGCGTGCCGCTTTTATCCCTAACGATCAGTTGC GCGATAAAGATCGTGGGCGCTTCAGTTTCAATGGCTACCACAATATCGATAACCATTGGCAGGCGCGTGCTTCATTGGCC TGGGTCAGTGATACCCGCTATATGGAGGATTTTTCCAGCCGCCTTGTTGGGATGTCATCTCTGTCGAGCTTGCAAAGCAC CGTCGGTGTGTACGGTACAGGTGAGACATGGACGGCTGGCCTGATGGCTGACCGCTGGCAACTCACTGATTACAGCTTGA ATGAAAGTGCGTTGGCTTATAACCGTCAGCCGCGCTTGTTTTTCAACTGGGATAAGCCGGTGTTGGACTTTCTGGAATTC GGCCTGTACAGCGAGGTGGTGCGTTTCAAACACGATGATGCGTATTTGGTGGCACTCCAGAATGATGGCAATTATCTCCG TACCGGCGAGGTGATTCGCTATTACGGCGGCACTCGCCTGGATGTGAAGCCTTATGTATCGCTACCTTTCACGGGTGCGT CTTGGTACGTCACTCCGACGTTTGGGTGGCGCTATTCCTCCTATTATTTGGATAGCGGCATTGCAGAACAATTGAATGGG AGTCGCACGCCGGTGCGCAGCCTGCCTATCGTCTCTTTGGACTCGGGGGTGTACTTGGATCGTGACACCACTGTTTTCGG CAGGAACTATCTCAATACATTGGAACCGCGGTTTTACTATCTGTATGTCCCCTACCGTAACCAGAGTGATCTGCCGCTGT TCGATACTCGTGCGTTTACCTTCAGTTGGGGGCAACTGTTCCGCGACAGCCGCTACACTGGTCCCGACCGTCAAAACGAC GCCAATCAGCTGACTCTAGCGGTCACGTCGCGGTGGCTGGATCAAAATACTGGCAAGGAGGATCTTGCGCTGAGTGTCGG CCAGATCCTGTACTTCAAGGATTCGCTTGTCACGTTGAGCGATAGTGAGGAACGTATCCAAAAGGGTAAGTCGGTTTGGG TTAGTGATGTGGCTTACAACGTCAACGACCGTTGGACGCTGAACGCAACGTACCAGTGGAATCCTAATTTCCGCCGCGAT GATTTAGCCAGCGTCCGCGCCCGTTACTTGATCGGTAGCGATGGCATCATCAACCTGGCTTACCGTTATCGGCGTAATAC CTTGGATGGGACAACCCAGCTCAAACAGACGGATTTTTCTTTCCTGTATCCAATCAATCCCCGTTGGAGTGCCATTGGTC GTTACTACTATTCGTTGTTGGATAAGAAGCCGTTGGAAATCATCGGTGGTCTCCAGTGGGATAGTTGTTGTTTAGCCGTA CGCACCGTGCTCCGTCGTCACATGCGTGACCGGACAGGGAATATGGATAATTCTATTCAGCTGGAGTTTGTGTTTAAGGG CTTGAGCTCAGTGGGGCAGGACACAGATCGGGTCCTACGCCGTGCTATTCTCGGTTACTATCGCGATGACCTTTACTTGG TTCCGCCTAGTAATACGACGACCGATCCAGACGCTTACGATCCAAATAAGATTCCATGA
Upstream 100 bases:
>100_bases GCATGTTTGCGGTGATTGAACTATTGCGTCTTAACTTTATTGTCCATCAGTGGGGGATGGGGCAAGCTAAGCGACGTTAT TATTGTGATAATCCGACCAC
Downstream 100 bases:
>100_bases CCAGATATTTTTCTATTGTTCTCTCTTTGCTGTTGGCTGTGTCCTGCGTGTTTTTGCCGGTGGCGTCAGCACGACAGCAA CAACATCAACCGCTTGATCG
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MYRVLRLLPLPLSVAISLSALADEKPPNWGLCPATLPLQGFEQAPGMDKHVVQSRPQLPTNIEGDTLTGTARTPLYQGNV LMARGDQLLGADSVRMDTETDSYVAEGHVRYQDSSILVVADRAEGNQDTDVHKISNIQYQLIGRRGNGVAKSVDIHGQVG QTHEATYTTCDPSQAIWRLRAPEIDVDNVEGFGVARHAVFEVGQWPVLYLPWFKFPIDSRRQTGLLYPQLGYSGRNGFDY AQPIYLNLAPNYDATLYPRYMQKRGFMIDTEFRYLYDDGKWQTRAAFIPNDQLRDKDRGRFSFNGYHNIDNHWQARASLA WVSDTRYMEDFSSRLVGMSSLSSLQSTVGVYGTGETWTAGLMADRWQLTDYSLNESALAYNRQPRLFFNWDKPVLDFLEF GLYSEVVRFKHDDAYLVALQNDGNYLRTGEVIRYYGGTRLDVKPYVSLPFTGASWYVTPTFGWRYSSYYLDSGIAEQLNG SRTPVRSLPIVSLDSGVYLDRDTTVFGRNYLNTLEPRFYYLYVPYRNQSDLPLFDTRAFTFSWGQLFRDSRYTGPDRQND ANQLTLAVTSRWLDQNTGKEDLALSVGQILYFKDSLVTLSDSEERIQKGKSVWVSDVAYNVNDRWTLNATYQWNPNFRRD DLASVRARYLIGSDGIINLAYRYRRNTLDGTTQLKQTDFSFLYPINPRWSAIGRYYYSLLDKKPLEIIGGLQWDSCCLAV RTVLRRHMRDRTGNMDNSIQLEFVFKGLSSVGQDTDRVLRRAILGYYRDDLYLVPPSNTTTDPDAYDPNKIP
Sequences:
>Translated_792_residues MYRVLRLLPLPLSVAISLSALADEKPPNWGLCPATLPLQGFEQAPGMDKHVVQSRPQLPTNIEGDTLTGTARTPLYQGNV LMARGDQLLGADSVRMDTETDSYVAEGHVRYQDSSILVVADRAEGNQDTDVHKISNIQYQLIGRRGNGVAKSVDIHGQVG QTHEATYTTCDPSQAIWRLRAPEIDVDNVEGFGVARHAVFEVGQWPVLYLPWFKFPIDSRRQTGLLYPQLGYSGRNGFDY AQPIYLNLAPNYDATLYPRYMQKRGFMIDTEFRYLYDDGKWQTRAAFIPNDQLRDKDRGRFSFNGYHNIDNHWQARASLA WVSDTRYMEDFSSRLVGMSSLSSLQSTVGVYGTGETWTAGLMADRWQLTDYSLNESALAYNRQPRLFFNWDKPVLDFLEF GLYSEVVRFKHDDAYLVALQNDGNYLRTGEVIRYYGGTRLDVKPYVSLPFTGASWYVTPTFGWRYSSYYLDSGIAEQLNG SRTPVRSLPIVSLDSGVYLDRDTTVFGRNYLNTLEPRFYYLYVPYRNQSDLPLFDTRAFTFSWGQLFRDSRYTGPDRQND ANQLTLAVTSRWLDQNTGKEDLALSVGQILYFKDSLVTLSDSEERIQKGKSVWVSDVAYNVNDRWTLNATYQWNPNFRRD DLASVRARYLIGSDGIINLAYRYRRNTLDGTTQLKQTDFSFLYPINPRWSAIGRYYYSLLDKKPLEIIGGLQWDSCCLAV RTVLRRHMRDRTGNMDNSIQLEFVFKGLSSVGQDTDRVLRRAILGYYRDDLYLVPPSNTTTDPDAYDPNKIP >Mature_792_residues MYRVLRLLPLPLSVAISLSALADEKPPNWGLCPATLPLQGFEQAPGMDKHVVQSRPQLPTNIEGDTLTGTARTPLYQGNV LMARGDQLLGADSVRMDTETDSYVAEGHVRYQDSSILVVADRAEGNQDTDVHKISNIQYQLIGRRGNGVAKSVDIHGQVG QTHEATYTTCDPSQAIWRLRAPEIDVDNVEGFGVARHAVFEVGQWPVLYLPWFKFPIDSRRQTGLLYPQLGYSGRNGFDY AQPIYLNLAPNYDATLYPRYMQKRGFMIDTEFRYLYDDGKWQTRAAFIPNDQLRDKDRGRFSFNGYHNIDNHWQARASLA WVSDTRYMEDFSSRLVGMSSLSSLQSTVGVYGTGETWTAGLMADRWQLTDYSLNESALAYNRQPRLFFNWDKPVLDFLEF GLYSEVVRFKHDDAYLVALQNDGNYLRTGEVIRYYGGTRLDVKPYVSLPFTGASWYVTPTFGWRYSSYYLDSGIAEQLNG SRTPVRSLPIVSLDSGVYLDRDTTVFGRNYLNTLEPRFYYLYVPYRNQSDLPLFDTRAFTFSWGQLFRDSRYTGPDRQND ANQLTLAVTSRWLDQNTGKEDLALSVGQILYFKDSLVTLSDSEERIQKGKSVWVSDVAYNVNDRWTLNATYQWNPNFRRD DLASVRARYLIGSDGIINLAYRYRRNTLDGTTQLKQTDFSFLYPINPRWSAIGRYYYSLLDKKPLEIIGGLQWDSCCLAV RTVLRRHMRDRTGNMDNSIQLEFVFKGLSSVGQDTDRVLRRAILGYYRDDLYLVPPSNTTTDPDAYDPNKIP
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=811, Percent_Identity=27.3736128236745, Blast_Score=259, Evalue=5e-70,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 90770; Mature: 90770
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRVLRLLPLPLSVAISLSALADEKPPNWGLCPATLPLQGFEQAPGMDKHVVQSRPQLPT CCCEEEECCCCHHHEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC NIEGDTLTGTARTPLYQGNVLMARGDQLLGADSVRMDTETDSYVAEGHVRYQDSSILVVA CCCCCEEECCCCCCEEECCEEEECCCCEECCCCEEECCCCCCEEECCEEEEECCEEEEEE DRAEGNQDTDVHKISNIQYQLIGRRGNGVAKSVDIHGQVGQTHEATYTTCDPSQAIWRLR ECCCCCCCCCHHHHCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCHHHHHEEEC APEIDVDNVEGFGVARHAVFEVGQWPVLYLPWFKFPIDSRRQTGLLYPQLGYSGRNGFDY CCCCCCCCCCCCCHHHHHHHHCCCCCEEEECEEECCCCCCCCCCEEEECCCCCCCCCCCC AQPIYLNLAPNYDATLYPRYMQKRGFMIDTEFRYLYDDGKWQTRAAFIPNDQLRDKDRGR CCCEEEEECCCCCCEECHHHHHHCCCEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCE FSFNGYHNIDNHWQARASLAWVSDTRYMEDFSSRLVGMSSLSSLQSTVGVYGTGETWTAG EEECCCCCCCCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEC LMADRWQLTDYSLNESALAYNRQPRLFFNWDKPVLDFLEFGLYSEVVRFKHDDAYLVALQ CEECCEEECCCCCCCCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHEECCCEEEEEEE NDGNYLRTGEVIRYYGGTRLDVKPYVSLPFTGASWYVTPTFGWRYSSYYLDSGIAEQLNG CCCCEEECCCEEEECCCEEEEECCEEECCCCCCCEEEECCCCCEEEEEEECCCHHHHCCC SRTPVRSLPIVSLDSGVYLDRDTTVFGRNYLNTLEPRFYYLYVPYRNQSDLPLFDTRAFT CCCCHHCCCEEEECCCEEECCCCEEECCHHHHCCCCEEEEEEEEECCCCCCCEEECEEEE FSWGQLFRDSRYTGPDRQNDANQLTLAVTSRWLDQNTGKEDLALSVGQILYFKDSLVTLS EEHHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHCEEEEEECCEEEEC DSEERIQKGKSVWVSDVAYNVNDRWTLNATYQWNPNFRRDDLASVRARYLIGSDGIINLA CCHHHHHCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHEEEEECCCCEEEEE YRYRRNTLDGTTQLKQTDFSFLYPINPRWSAIGRYYYSLLDKKPLEIIGGLQWDSCCLAV EEHHCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHH RTVLRRHMRDRTGNMDNSIQLEFVFKGLSSVGQDTDRVLRRAILGYYRDDLYLVPPSNTT HHHHHHHHHHHCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCC TDPDAYDPNKIP CCCCCCCCCCCC >Mature Secondary Structure MYRVLRLLPLPLSVAISLSALADEKPPNWGLCPATLPLQGFEQAPGMDKHVVQSRPQLPT CCCEEEECCCCHHHEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC NIEGDTLTGTARTPLYQGNVLMARGDQLLGADSVRMDTETDSYVAEGHVRYQDSSILVVA CCCCCEEECCCCCCEEECCEEEECCCCEECCCCEEECCCCCCEEECCEEEEECCEEEEEE DRAEGNQDTDVHKISNIQYQLIGRRGNGVAKSVDIHGQVGQTHEATYTTCDPSQAIWRLR ECCCCCCCCCHHHHCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCHHHHHEEEC APEIDVDNVEGFGVARHAVFEVGQWPVLYLPWFKFPIDSRRQTGLLYPQLGYSGRNGFDY CCCCCCCCCCCCCHHHHHHHHCCCCCEEEECEEECCCCCCCCCCEEEECCCCCCCCCCCC AQPIYLNLAPNYDATLYPRYMQKRGFMIDTEFRYLYDDGKWQTRAAFIPNDQLRDKDRGR CCCEEEEECCCCCCEECHHHHHHCCCEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCE FSFNGYHNIDNHWQARASLAWVSDTRYMEDFSSRLVGMSSLSSLQSTVGVYGTGETWTAG EEECCCCCCCCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCEEEC LMADRWQLTDYSLNESALAYNRQPRLFFNWDKPVLDFLEFGLYSEVVRFKHDDAYLVALQ CEECCEEECCCCCCCCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHEECCCEEEEEEE NDGNYLRTGEVIRYYGGTRLDVKPYVSLPFTGASWYVTPTFGWRYSSYYLDSGIAEQLNG CCCCEEECCCEEEECCCEEEEECCEEECCCCCCCEEEECCCCCEEEEEEECCCHHHHCCC SRTPVRSLPIVSLDSGVYLDRDTTVFGRNYLNTLEPRFYYLYVPYRNQSDLPLFDTRAFT CCCCHHCCCEEEECCCEEECCCCEEECCHHHHCCCCEEEEEEEEECCCCCCCEEECEEEE FSWGQLFRDSRYTGPDRQNDANQLTLAVTSRWLDQNTGKEDLALSVGQILYFKDSLVTLS EEHHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHCEEEEEECCEEEEC DSEERIQKGKSVWVSDVAYNVNDRWTLNATYQWNPNFRRDDLASVRARYLIGSDGIINLA CCHHHHHCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHEEEEECCCCEEEEE YRYRRNTLDGTTQLKQTDFSFLYPINPRWSAIGRYYYSLLDKKPLEIIGGLQWDSCCLAV EEHHCCCCCCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHH RTVLRRHMRDRTGNMDNSIQLEFVFKGLSSVGQDTDRVLRRAILGYYRDDLYLVPPSNTT HHHHHHHHHHHCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCC TDPDAYDPNKIP CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]