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The map label for this gene is ompW [H]

Identifier: 182682423

GI number: 182682423

Start: 2125224

End: 2125880

Strand: Reverse

Name: ompW [H]

Synonym: XfasM23_1909

Alternate gene names: 182682423

Gene position: 2125880-2125224 (Counterclockwise)

Preceding gene: 182682426

Following gene: 182682419

Centisome position: 83.84

GC content: 48.71

Gene sequence:

>657_bases
ATGCGTAAAATTTCACTGATTGGCCTAGCTACTATGAGTATGCTGGCCTTTAACACCTCAGCCTTTGCGTTGGGCACGGC
TTCTTCCAACAGTGGTGCCTCCGGCAAGCATTGGTCAGTGGTTGGCGGCGCTGCCCTCGTGCAACCAAAGAATGGGAAAA
ATGCAGCACAGAATACTGTCAAGTTTGGTGGCGATGTTGCACCAACGCTTAGTGTCACCTACTACATCAACGATAATGTG
GGATTCGAGCTGTGGGGTATTACTAAAAAGTTGAGTTATACCGCAAAGACTGACGCATCGGGCAAGATCGGCAATGTGAC
TCAAAAGACACCGTTAGCGTTGAGTGCGCAGTATCACTTTGGTCAGGCGCAAAACGTGTTCCGTCCGTTTGTTGGTGTTG
GTTATTCTCAAGCTAAGTCTAGATTTACTGCTCTGGGATCTACCGATCGTGTGAATCTAGGCAATTTCCGCGGTGCAATC
GGCACGATTGGTTTAGATATGAATGTTGATTCAAATTGGTTTGCTCGTCTTGATGCGCGTTATACGCGTTTCAGTAATAG
CAATAGCAAGGCGGCTCTTTCTTCAAGTTTGGGTCTCGATCAGAATCGGAGACTGGATCCGTGGTCCGTGGGTTTCGGCA
TCGGCGCGCGTTTCTGA

Upstream 100 bases:

>100_bases
GTGTCACAGTTGTTAAAAATTCATCACTTGGACGCCAAGCGTTGCGCTTCCCAATTCCAAGGGTGAGAATGAACAGTTAA
GGAACTAGGAGAAAGATTCT

Downstream 100 bases:

>100_bases
AAGTTTAGATCTCTCTCCAATAACAGCGTAAACCAAGACGGGCCCACCAGGGCCCGTCTTCTTGTTTGTAAATGTCCAGG
CTGATTGGGACACATTTAGA

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRKISLIGLATMSMLAFNTSAFALGTASSNSGASGKHWSVVGGAALVQPKNGKNAAQNTVKFGGDVAPTLSVTYYINDNV
GFELWGITKKLSYTAKTDASGKIGNVTQKTPLALSAQYHFGQAQNVFRPFVGVGYSQAKSRFTALGSTDRVNLGNFRGAI
GTIGLDMNVDSNWFARLDARYTRFSNSNSKAALSSSLGLDQNRRLDPWSVGFGIGARF

Sequences:

>Translated_218_residues
MRKISLIGLATMSMLAFNTSAFALGTASSNSGASGKHWSVVGGAALVQPKNGKNAAQNTVKFGGDVAPTLSVTYYINDNV
GFELWGITKKLSYTAKTDASGKIGNVTQKTPLALSAQYHFGQAQNVFRPFVGVGYSQAKSRFTALGSTDRVNLGNFRGAI
GTIGLDMNVDSNWFARLDARYTRFSNSNSKAALSSSLGLDQNRRLDPWSVGFGIGARF
>Mature_218_residues
MRKISLIGLATMSMLAFNTSAFALGTASSNSGASGKHWSVVGGAALVQPKNGKNAAQNTVKFGGDVAPTLSVTYYINDNV
GFELWGITKKLSYTAKTDASGKIGNVTQKTPLALSAQYHFGQAQNVFRPFVGVGYSQAKSRFTALGSTDRVNLGNFRGAI
GTIGLDMNVDSNWFARLDARYTRFSNSNSKAALSSSLGLDQNRRLDPWSVGFGIGARF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=239, Percent_Identity=28.4518828451883, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23193; Mature: 23193

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKISLIGLATMSMLAFNTSAFALGTASSNSGASGKHWSVVGGAALVQPKNGKNAAQNTV
CCEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCEEEEECCCCCCHHHHHH
KFGGDVAPTLSVTYYINDNVGFELWGITKKLSYTAKTDASGKIGNVTQKTPLALSAQYHF
HCCCCCCCEEEEEEEECCCCCEEEEECEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECC
GQAQNVFRPFVGVGYSQAKSRFTALGSTDRVNLGNFRGAIGTIGLDMNVDSNWFARLDAR
CCHHHHHHHHHCCCHHHHHHHEEECCCCCCEECCCCCCCEEEEEEEECCCCCCEEEECCC
YTRFSNSNSKAALSSSLGLDQNRRLDPWSVGFGIGARF
EEECCCCCCCEEHHHHCCCCCCCCCCCEEECCCCCCCC
>Mature Secondary Structure
MRKISLIGLATMSMLAFNTSAFALGTASSNSGASGKHWSVVGGAALVQPKNGKNAAQNTV
CCEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCEEEEECCCCCCHHHHHH
KFGGDVAPTLSVTYYINDNVGFELWGITKKLSYTAKTDASGKIGNVTQKTPLALSAQYHF
HCCCCCCCEEEEEEEECCCCCEEEEECEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECC
GQAQNVFRPFVGVGYSQAKSRFTALGSTDRVNLGNFRGAIGTIGLDMNVDSNWFARLDAR
CCHHHHHHHHHCCCHHHHHHHEEECCCCCCEECCCCCCCEEEEEEEECCCCCCEEEECCC
YTRFSNSNSKAALSSSLGLDQNRRLDPWSVGFGIGARF
EEECCCCCCCEEHHHHCCCCCCCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]