Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is 182682330
Identifier: 182682330
GI number: 182682330
Start: 2022977
End: 2023345
Strand: Direct
Name: 182682330
Synonym: XfasM23_1813
Alternate gene names: NA
Gene position: 2022977-2023345 (Clockwise)
Preceding gene: 182682329
Following gene: 182682331
Centisome position: 79.78
GC content: 49.86
Gene sequence:
>369_bases ATGAGTGGGAATAGACTTCCCGATTACCTTGAGCACATGCAGCAGGCCGCCACAGATGCGTGTAGTTTTGTGGAAGGTTT GGCCAAAGAGGATTTTCTTGAGGACAAACGAACCCAGCAAGCCGTCATCATGAGCCTTATTATCATTGGTGAAGCCGTCA CAAAGGTGATGGATCGCTATGCCGAGTTTACCCAGGCACATGATCAAGTACCTTGGCGGAGTATGCGCGGCATGCGTAAT CGCATCGCTCATGGCTACTTTGAAATCAACCTTGACGTGGTGTGGGATACCGTGCAATCAGCCCTCCCAGAGTTACTCAA GCAATTGGCCGCTGCGCGTCAAGATGCCAATGACCAATCACTTTTATAA
Upstream 100 bases:
>100_bases AAGAACTGAAATCGTTACTCGGCGTTGACGTCGATGTACTAACGTCAGGTGATCTGCCACTTAAGTTCCGGGCGAAGGTG CTCGCGGAAGCGCAGCCAAT
Downstream 100 bases:
>100_bases GAGTCTAGAAGTTTTTTTATGGGAAACGTGAGGTATAGAAAACATGAACAATCCTCTAAGGTGAGAAGGGCGGTGCTTGG CCTTGTCTCTGAAGTTGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MSGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRYAEFTQAHDQVPWRSMRGMRN RIAHGYFEINLDVVWDTVQSALPELLKQLAAARQDANDQSLL
Sequences:
>Translated_122_residues MSGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRYAEFTQAHDQVPWRSMRGMRN RIAHGYFEINLDVVWDTVQSALPELLKQLAAARQDANDQSLL >Mature_121_residues SGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRYAEFTQAHDQVPWRSMRGMRNR IAHGYFEINLDVVWDTVQSALPELLKQLAAARQDANDQSLL
Specific function: Unknown
COG id: COG2361
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0331 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008201 [H]
Pfam domain/function: PF01934 DUF86 [H]
EC number: NA
Molecular weight: Translated: 13884; Mature: 13753
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEFTQAHDQVPWRSMRGMRNRIAHGYFEINLDVVWDTVQSALPELLKQLAAARQDANDQS HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LL CC >Mature Secondary Structure SGNRLPDYLEHMQQAATDACSFVEGLAKEDFLEDKRTQQAVIMSLIIIGEAVTKVMDRY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEFTQAHDQVPWRSMRGMRNRIAHGYFEINLDVVWDTVQSALPELLKQLAAARQDANDQS HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]