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The map label for this gene is yjgF [C]

Identifier: 182682316

GI number: 182682316

Start: 2005365

End: 2005820

Strand: Reverse

Name: yjgF [C]

Synonym: XfasM23_1799

Alternate gene names: 182682316

Gene position: 2005820-2005365 (Counterclockwise)

Preceding gene: 182682317

Following gene: 182682315

Centisome position: 79.1

GC content: 53.51

Gene sequence:

>456_bases
ATGCTGAGATTGCTGGCTCTTGAGCGGGCACCGATACAATGCACTTTTATTTTCCATCGACTCCACATTCAAATGTCCTT
CCAGATCATCCATACCGAAAAAGCGCCGGCTGCGATCGGCCCGTATTCTCAGGCCGTGCGTGTTGGCAACACCGTGTATT
TTTCAGGCCAGATTCCATTGGATCCAGCCACCGGTACCATTGTCGCTGGCGACCTCGCGGTCCAAGCCCGTCGTGCATTC
GATAACCTCAGAGCAGTTGCTGAGACTGCTAACGGCTCCCTCTCCAAAATCGTCCGTTTAGGGCTTTACCTGACTGACTT
GGAGCAATTTTCTGTGGTCAATGCGGTGATGCAGGAATACTTTCAGGCCCCCTTCCCAGCACGCTCCACCATTCAGGTCT
CCGGTTTACCCAAGGGCGCGGATTTCGAGGTGGATGCAGTGATGGTGATTGACTGA

Upstream 100 bases:

>100_bases
AGGTATTAGTAGATGAGACCTGCACCTCATGCACTCTTTCTCCACTGGCTTTCTTCTGCAACTGGAGCATTGATACCACT
GACTTGTGATTCGTACCTAG

Downstream 100 bases:

>100_bases
TCCCTGCTATGCCGCGTGCACGTTCGCATGCCATCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGG
GTTGGGCCGGTATTAGCTGG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLRLLALERAPIQCTFIFHRLHIQMSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAF
DNLRAVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEVDAVMVID

Sequences:

>Translated_151_residues
MLRLLALERAPIQCTFIFHRLHIQMSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAF
DNLRAVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEVDAVMVID
>Mature_151_residues
MLRLLALERAPIQCTFIFHRLHIQMSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPLDPATGTIVAGDLAVQARRAF
DNLRAVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEYFQAPFPARSTIQVSGLPKGADFEVDAVMVID

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=42.6229508196721, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=44.8, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=42.4, Blast_Score=107, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=42.0634920634921, Blast_Score=110, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=42.0634920634921, Blast_Score=109, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=42.0634920634921, Blast_Score=109, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=35.8333333333333, Blast_Score=88, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=85, Evalue=5e-18,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=38.3333333333333, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 16506; Mature: 16506

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLLALERAPIQCTFIFHRLHIQMSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPL
CEEEEEECCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCHHHEEECCEEEECCCCCC
DPATGTIVAGDLAVQARRAFDNLRAVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEY
CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQAPFPARSTIQVSGLPKGADFEVDAVMVID
HCCCCCCCCEEEECCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MLRLLALERAPIQCTFIFHRLHIQMSFQIIHTEKAPAAIGPYSQAVRVGNTVYFSGQIPL
CEEEEEECCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCHHHEEECCEEEECCCCCC
DPATGTIVAGDLAVQARRAFDNLRAVAETANGSLSKIVRLGLYLTDLEQFSVVNAVMQEY
CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQAPFPARSTIQVSGLPKGADFEVDAVMVID
HCCCCCCCCEEEECCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]