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The map label for this gene is recD [H]

Identifier: 182682262

GI number: 182682262

Start: 1927929

End: 1929848

Strand: Reverse

Name: recD [H]

Synonym: XfasM23_1744

Alternate gene names: 182682262

Gene position: 1929848-1927929 (Counterclockwise)

Preceding gene: 182682263

Following gene: 182682261

Centisome position: 76.11

GC content: 62.97

Gene sequence:

>1920_bases
ATGAGCCTGCTCGCCGCGCTCAACCAGGCTGGTGTGTTGCGTACGTTGGATGATGCGTTGGCGCGGAGTTTGTGCCGTCT
TGATCCGAAGACTCCGGACAAGGTGGCCGCTGCCGCTGCGCTGGCCTCAATGGCGGTGGCGCATGGTCACGCGGGTGTAG
ATCTGGCCCATCCTGGATTGCTCGCTGGAGAGATGTTCGACTGGCCTTCCGCTGCGGAGTGGGTGCATCTGCTGCGCGCC
AGTCGGTGGGTGGCCGAGCCATCTGAGGGGGAGGCACCAGCACCGACAGGGCAGCCGTTGGTGCTTGAGCAAGGGGTGCT
CTATCTGCGTCGCTATCGTGAGTATGAGCGGCGTTTAGCGATCGGTTTGCGTCGGATTGCCGCTGCACGGTTGCCACCGG
CTGAATCGGCCGCGGTGGCGACGGTGTTTGCGGCGTTGTTTCCACAGGCACGCGCTGGGCAGGATCGTCAGGCATTGGCG
GCTGCGTTGGCGTTGCAGCGTGCGTTATTGCTGGTCACGGGGGGGCCTGGGACTGGCAAGACAACGACGATTGCGCGCCT
GTTATTGCTGCGTGTCGCCCAGGCGCGGCAACAGGGGCAGGCGTCGTTACGTATTGCGCTGGCCGCGCCGACGGGCCGTG
CGGCCGAGCGAATGGCTGAAAGTCTGCGTGCGGCGGCAGGGCATGTGTCCGCGGCGGGGGGGGATGCGGCGTTGTTTGCC
GCGTTGCCGTCGGGAGCGAGTACGGTGCATCGTTTGCTTGGGGTGATCCCCGATACGCCGCGCTTTCGTCATTGTGAGGA
CAATCCGTTGCCTTATGACGTGATCGTGGTGGATGAGGCTTCAATGATGGATCTGCCGCTGATGTGTAAGTTGGTGGATG
CTGTGGCGGACGGGACGCAGTTGATTTTGCTGGGTGATCCGGATCAGTTGCCGTCAGTGGAGGCGGGCGATGTGCTTGCG
GGGATTCTTGCCGCTGCCGGTTCCGGTGAGGTGTTGGATGTCGCCGATGCGCAGGTATTGGCGCCCTTGTTAGGCGCGCC
GTCTGCAGCGGTTGTTGCAGAGTGTCACGTTGTCCGCGGGGGGTTACATGGGCATCGGGTGCATCTGCAACACAGTCACC
GTCAGGGTGAGGATTTAGCGTTGGCGCCGTTGGCTGAGGCGGTGCGTTTGGGGGATGCGACTGCGGTGCTGGGGATGTTG
CGTCGCGGCACACTTCGTGGGGTGCAATTTCATGAGGGGGTCTTGGATCCGTGTGTCGGGGCTGGTCAGGTGTTGTTGGC
GCATTGGCGTGCGTTGGCTGCGTTGTCTGATCCGGTGCAGGCATTGGCAGCGGCGGGGCGATTACGTTTGTTGACGGCGT
TGCGTGAGGGGCCGCAGGGGGCGGCGGGGATCAATGCGCGGATTGAGCGCCTGCTCGGCGGCGGCGGTGTGGATGGTTAC
TTTCATGGGCGGCTGTTGTTGATGACTGAGACTAGTTCTCGTCAGCGTTTGTTCAATGGTGATATTGGGGTGTGTCTTCG
GGATGATGATGGGACGATGTGGGCTTGGTTTTCTGGTGCTGGGGGAGAGGGTGTCCGCGCATTTGCACCGGCTGCGTTGC
CGGCGCATGAGAGTGCGTTTGCGATGACGGTGCATAAGGCGCAGGGGTCGGAGTTCGATACGGTGTGGTTGCAGTTGCCG
CGTCAGGAGAGTCGGGTGCTGTCACGGGAGTTGATCTATACGGGGTTGACTCGTGCACGCCATGGGTTGCATGTGGCGGG
CAGTGAGTCGGTGTTGTGTGCGGCGTTGGCACGGCAAGCGGTGCGTGTGTCGGGGCTGGCTTGGCGGCTTGGTGTCACTG
GTTGCAACACGGTGCCAATAGGGGCAGGTGCGGGGGATGCGGAGGTGTTTGGCAAGGGGGGGCAAGGGGTGTTGTTCTGA

Upstream 100 bases:

>100_bases
GTGCGCCTATGACGTGTACGGATGCAGTGGGGGTAAATGCGCCGTCTTTTATTCCTGCCTTGATCGCTGCGGTCGCTGTG
ATGTTCAGCGGAGCCTGCCT

Downstream 100 bases:

>100_bases
ACGTGGCGGTGCTGAGGTGGGTCATGACAGTGGTGTGGATAGGCCGGGGGATGTGCGGTACTGCGTCATGACATGGATTG
CAAACTCTGGGTTCAGGTTG

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MSLLAALNQAGVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAHPGLLAGEMFDWPSAAEWVHLLRA
SRWVAEPSEGEAPAPTGQPLVLEQGVLYLRRYREYERRLAIGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALA
AALALQRALLLVTGGPGTGKTTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVSAAGGDAALFA
ALPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCKLVDAVADGTQLILLGDPDQLPSVEAGDVLA
GILAAAGSGEVLDVADAQVLAPLLGAPSAAVVAECHVVRGGLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGML
RRGTLRGVQFHEGVLDPCVGAGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINARIERLLGGGGVDGY
FHGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGEGVRAFAPAALPAHESAFAMTVHKAQGSEFDTVWLQLP
RQESRVLSRELIYTGLTRARHGLHVAGSESVLCAALARQAVRVSGLAWRLGVTGCNTVPIGAGAGDAEVFGKGGQGVLF

Sequences:

>Translated_639_residues
MSLLAALNQAGVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAHPGLLAGEMFDWPSAAEWVHLLRA
SRWVAEPSEGEAPAPTGQPLVLEQGVLYLRRYREYERRLAIGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALA
AALALQRALLLVTGGPGTGKTTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVSAAGGDAALFA
ALPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCKLVDAVADGTQLILLGDPDQLPSVEAGDVLA
GILAAAGSGEVLDVADAQVLAPLLGAPSAAVVAECHVVRGGLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGML
RRGTLRGVQFHEGVLDPCVGAGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINARIERLLGGGGVDGY
FHGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGEGVRAFAPAALPAHESAFAMTVHKAQGSEFDTVWLQLP
RQESRVLSRELIYTGLTRARHGLHVAGSESVLCAALARQAVRVSGLAWRLGVTGCNTVPIGAGAGDAEVFGKGGQGVLF
>Mature_638_residues
SLLAALNQAGVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAHPGLLAGEMFDWPSAAEWVHLLRAS
RWVAEPSEGEAPAPTGQPLVLEQGVLYLRRYREYERRLAIGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALAA
ALALQRALLLVTGGPGTGKTTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVSAAGGDAALFAA
LPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCKLVDAVADGTQLILLGDPDQLPSVEAGDVLAG
ILAAAGSGEVLDVADAQVLAPLLGAPSAAVVAECHVVRGGLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGMLR
RGTLRGVQFHEGVLDPCVGAGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINARIERLLGGGGVDGYF
HGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGEGVRAFAPAALPAHESAFAMTVHKAQGSEFDTVWLQLPR
QESRVLSRELIYTGLTRARHGLHVAGSESVLCAALARQAVRVSGLAWRLGVTGCNTVPIGAGAGDAEVFGKGGQGVLF

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=598, Percent_Identity=38.2943143812709, Blast_Score=268, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 66561; Mature: 66430

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLAALNQAGVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAHPGL
CCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC
LAGEMFDWPSAAEWVHLLRASRWVAEPSEGEAPAPTGQPLVLEQGVLYLRRYREYERRLA
EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
IGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALAAALALQRALLLVTGGPGTGK
HHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCH
TTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVSAAGGDAALFA
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
ALPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCKLVDAVADGTQ
ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCE
LILLGDPDQLPSVEAGDVLAGILAAAGSGEVLDVADAQVLAPLLGAPSAAVVAECHVVRG
EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHC
GLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGMLRRGTLRGVQFHEGVLDPCVG
CCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHCCCHHHCCC
AGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINARIERLLGGGGVDGY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCE
FHGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGEGVRAFAPAALPAHESAF
ECCEEEEEECCCCCHHEECCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCE
AMTVHKAQGSEFDTVWLQLPRQESRVLSRELIYTGLTRARHGLHVAGSESVLCAALARQA
EEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHH
VRVSGLAWRLGVTGCNTVPIGAGAGDAEVFGKGGQGVLF
HHHCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure 
SLLAALNQAGVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAHPGL
CHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCC
LAGEMFDWPSAAEWVHLLRASRWVAEPSEGEAPAPTGQPLVLEQGVLYLRRYREYERRLA
EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
IGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALAAALALQRALLLVTGGPGTGK
HHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCH
TTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVSAAGGDAALFA
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
ALPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCKLVDAVADGTQ
ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCE
LILLGDPDQLPSVEAGDVLAGILAAAGSGEVLDVADAQVLAPLLGAPSAAVVAECHVVRG
EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHC
GLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGMLRRGTLRGVQFHEGVLDPCVG
CCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHCCCHHHCCC
AGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINARIERLLGGGGVDGY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCE
FHGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGEGVRAFAPAALPAHESAF
ECCEEEEEECCCCCHHEECCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCE
AMTVHKAQGSEFDTVWLQLPRQESRVLSRELIYTGLTRARHGLHVAGSESVLCAALARQA
EEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHH
VRVSGLAWRLGVTGCNTVPIGAGAGDAEVFGKGGQGVLF
HHHCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]