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The map label for this gene is nodB [H]

Identifier: 182682021

GI number: 182682021

Start: 1657037

End: 1657864

Strand: Direct

Name: nodB [H]

Synonym: XfasM23_1497

Alternate gene names: 182682021

Gene position: 1657037-1657864 (Clockwise)

Preceding gene: 182682019

Following gene: 182682023

Centisome position: 65.35

GC content: 55.56

Gene sequence:

>828_bases
ATGGGACGTGGAATAGCTGCCCATTTTACGCCTGCATGCGATGATGCGGACATGACAACAAAAGAAATACCACATTACAC
CGTGATGCCTGCCCGTCCCTGGATAAGCTGGCTTATCTTGCTACACCTCACCGCCGCGGTACTGTGGTGGTACCTGGGTT
GGAACTGGGGACTGCCAATGATTTTCATCGCCCATATCAGCTTCTTATTGGCAATATTTTTACCTCAATCGCGGCTCTAT
GCGCCCGTCGTTGTACAGTTGGACAGCACTGCCCACCTCGTCTGGCTGACCATCGACGATGGCCCCTCCGATGACACCGC
AGCAATGCTAGATCTGCTCGACCGCCACGATGCGCGCGCCACGTTCTTCCTGGTTGGCGAACGCGCGGCACGTCAACCTG
CATTGGTACAAGATATACTGCACCGTGGTCATGCCATCGGTAACCACAGCCAGACCCACCCACATCAATGGTTCTGGGCA
CTTGGCCCACGCCAAATGGCGACCGAAATTGCAATGGCACAACGCACCTTAACCGAGATCACTGGGACCCCGCCACGCTG
GTACCGCTCAGTGGTTGGGATGACCAACCCATGGGTGGCCGCGCCATTACGTCAATACGGTCTGGACCGTATCGCATGGA
GCGCGCGCGGCTTTGATGGAAGGCACTGTGAACCAGATAAAGCCGTAAAACGGATCGTGCGAAATCTGCGCCCTGGTGCC
ATTGTGCTGCTACACGAAGGAATTACACATGGACACAACCTCATGATCCTAAGCCAAGTGTTGCAAGCCCTGGATGCACG
CGGCTTAAAAGCGCGTAATCCCCATTGA

Upstream 100 bases:

>100_bases
CCCGGACGCCCCTTCATAAACAAAACAACACGGTTGGAATGCAACAACGTTTCGATGCGCGAACGCAATGCAGAATCAAG
AGACATTTGGGAAACCGATC

Downstream 100 bases:

>100_bases
CGGATCACGCCGCCAACACGACTAATGCACCCACTGCTGCCTGCATCACCTCAACGGCACCGATGACACATCAACACGGC
CAGCTTGAAATCACCCTGCG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MGRGIAAHFTPACDDADMTTKEIPHYTVMPARPWISWLILLHLTAAVLWWYLGWNWGLPMIFIAHISFLLAIFLPQSRLY
APVVVQLDSTAHLVWLTIDDGPSDDTAAMLDLLDRHDARATFFLVGERAARQPALVQDILHRGHAIGNHSQTHPHQWFWA
LGPRQMATEIAMAQRTLTEITGTPPRWYRSVVGMTNPWVAAPLRQYGLDRIAWSARGFDGRHCEPDKAVKRIVRNLRPGA
IVLLHEGITHGHNLMILSQVLQALDARGLKARNPH

Sequences:

>Translated_275_residues
MGRGIAAHFTPACDDADMTTKEIPHYTVMPARPWISWLILLHLTAAVLWWYLGWNWGLPMIFIAHISFLLAIFLPQSRLY
APVVVQLDSTAHLVWLTIDDGPSDDTAAMLDLLDRHDARATFFLVGERAARQPALVQDILHRGHAIGNHSQTHPHQWFWA
LGPRQMATEIAMAQRTLTEITGTPPRWYRSVVGMTNPWVAAPLRQYGLDRIAWSARGFDGRHCEPDKAVKRIVRNLRPGA
IVLLHEGITHGHNLMILSQVLQALDARGLKARNPH
>Mature_274_residues
GRGIAAHFTPACDDADMTTKEIPHYTVMPARPWISWLILLHLTAAVLWWYLGWNWGLPMIFIAHISFLLAIFLPQSRLYA
PVVVQLDSTAHLVWLTIDDGPSDDTAAMLDLLDRHDARATFFLVGERAARQPALVQDILHRGHAIGNHSQTHPHQWFWAL
GPRQMATEIAMAQRTLTEITGTPPRWYRSVVGMTNPWVAAPLRQYGLDRIAWSARGFDGRHCEPDKAVKRIVRNLRPGAI
VLLHEGITHGHNLMILSQVLQALDARGLKARNPH

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=123, Percent_Identity=30.8943089430894, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 31027; Mature: 30896

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRGIAAHFTPACDDADMTTKEIPHYTVMPARPWISWLILLHLTAAVLWWYLGWNWGLPM
CCCCCCCCCCCCCCCCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IFIAHISFLLAIFLPQSRLYAPVVVQLDSTAHLVWLTIDDGPSDDTAAMLDLLDRHDARA
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCE
TFFLVGERAARQPALVQDILHRGHAIGNHSQTHPHQWFWALGPRQMATEIAMAQRTLTEI
EEEEECCHHCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
TGTPPRWYRSVVGMTNPWVAAPLRQYGLDRIAWSARGFDGRHCEPDKAVKRIVRNLRPGA
CCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCE
IVLLHEGITHGHNLMILSQVLQALDARGLKARNPH
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GRGIAAHFTPACDDADMTTKEIPHYTVMPARPWISWLILLHLTAAVLWWYLGWNWGLPM
CCCCCCCCCCCCCCCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IFIAHISFLLAIFLPQSRLYAPVVVQLDSTAHLVWLTIDDGPSDDTAAMLDLLDRHDARA
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCE
TFFLVGERAARQPALVQDILHRGHAIGNHSQTHPHQWFWALGPRQMATEIAMAQRTLTEI
EEEEECCHHCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
TGTPPRWYRSVVGMTNPWVAAPLRQYGLDRIAWSARGFDGRHCEPDKAVKRIVRNLRPGA
CCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCE
IVLLHEGITHGHNLMILSQVLQALDARGLKARNPH
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]