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The map label for this gene is rlpA [C]

Identifier: 182681851

GI number: 182681851

Start: 1449306

End: 1450559

Strand: Direct

Name: rlpA [C]

Synonym: XfasM23_1316

Alternate gene names: 182681851

Gene position: 1449306-1450559 (Clockwise)

Preceding gene: 182681850

Following gene: 182681867

Centisome position: 57.16

GC content: 53.83

Gene sequence:

>1254_bases
ATGAACACGCGCTGGTACTTCATAGCACTTGTATTTGACCTGATGGCGTGTAGCACCACACCACACAAAAGTGGCACATA
CCCATCCCCAGCCACCTCCAAAATCACCGGCGGCAAACCAACACAGACCGCCAACATTTGCCCACCGACCTCCCCATACG
CACCAGCTCAAGAGCTACCGGGTACCCGCGACGGCTACACCAAAAATGGCCTGTATAAACCTGGCATCAAAGATAGCATC
CCAGACAAACTCCCCGATGTCTCCTGTATCCCTGAGCCCCTTGTGGCCATCGAACCACGCTCGGCTATCGGCAACCAATC
CCCCTACGTGGTATTAGGCAAATCCTACCGGGTCCTTGACGAAGCCAAAGGCTATATCAAGCGCGGCGTTGCCTCTTATT
ACGGAACAAAATTCCATGGCCGACTGACCTCCAACCGCGAAGTCTATGACATGTACGCATTCACCGCCGCACACAAGACA
CTACCACTCCCAAGCTTCGCCTTGATTACTAATTTGGACAATGGCAAATCCGTCGTGGTCAGAGTCAATGATCGCGGCCC
ATTTCACGACGACCGATTGATTGATCTCAGCTACGCTGCGGCAGTGAAATTAGGCTTTACTGAAAACGGACTCGCCAACG
TCGAAGTGCGCGTACTCAGCGAAGACGACAACCCAATGCTCCTGGCCCGGCATGACAAACGCATCGCACCGACAACAGCA
AATCCGGTGGCCACGACCATGGCCCCAATGGCAACAACACAACCACCAACCACCAACATCGCCGCCGCCGCTAAACCTGA
TAACCCAATCAATCACCTGCAACCACTACCAACCAATGCCCCCCTGATTGCTGCTCTTACTCCGATAGGATCTCCAACAA
CCATCGCAACGCGGCAACCTAAATCTCCTACCATTACAACCACAAATGCCTCCGAAACCACACCACCTAGTGAAACAACC
AAAGACACTCTTACACTTACAGACTCCGCACATACCTCCAAAGTCACAGCAACCACCACCCTTGATAGCATCCTAGTGCA
AGTTGCCAGCTTCACAAGCCACGAAAACGCCAGCCGTGCACTGACCCAACTGACCTCAGCAGGCATTGTCGGCGCCAACC
TCAGCGCGATCGTCAACAGCGGGCGGACCTTCTGGCGGCTGCGAATTAACGCACCAAACCATGACACCGCATTGGAACTG
ATACGACGCATTACCCATCTCGGGTTAGGCCGTCCAGAAATCGTTGGCCTATGA

Upstream 100 bases:

>100_bases
AGAACTACTACGCGATTACCCGCTACAACCCCTCCAAAATGTACGCCATGGCCGTGTTCCAACTGTCCGAATCCATTGCC
GGCCGCACACTCCCCAAAAC

Downstream 100 bases:

>100_bases
TCCATCAATACTGGATTGGCATATACATATGCCGATCCAGCCATCCAAAGCACACCGTCCTTGCCCGCAAACATGCGGCT
ACCTCATTACACATCCCCGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MNTRWYFIALVFDLMACSTTPHKSGTYPSPATSKITGGKPTQTANICPPTSPYAPAQELPGTRDGYTKNGLYKPGIKDSI
PDKLPDVSCIPEPLVAIEPRSAIGNQSPYVVLGKSYRVLDEAKGYIKRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKT
LPLPSFALITNLDNGKSVVVRVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMLLARHDKRIAPTTA
NPVATTMAPMATTQPPTTNIAAAAKPDNPINHLQPLPTNAPLIAALTPIGSPTTIATRQPKSPTITTTNASETTPPSETT
KDTLTLTDSAHTSKVTATTTLDSILVQVASFTSHENASRALTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALEL
IRRITHLGLGRPEIVGL

Sequences:

>Translated_417_residues
MNTRWYFIALVFDLMACSTTPHKSGTYPSPATSKITGGKPTQTANICPPTSPYAPAQELPGTRDGYTKNGLYKPGIKDSI
PDKLPDVSCIPEPLVAIEPRSAIGNQSPYVVLGKSYRVLDEAKGYIKRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKT
LPLPSFALITNLDNGKSVVVRVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMLLARHDKRIAPTTA
NPVATTMAPMATTQPPTTNIAAAAKPDNPINHLQPLPTNAPLIAALTPIGSPTTIATRQPKSPTITTTNASETTPPSETT
KDTLTLTDSAHTSKVTATTTLDSILVQVASFTSHENASRALTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALEL
IRRITHLGLGRPEIVGL
>Mature_417_residues
MNTRWYFIALVFDLMACSTTPHKSGTYPSPATSKITGGKPTQTANICPPTSPYAPAQELPGTRDGYTKNGLYKPGIKDSI
PDKLPDVSCIPEPLVAIEPRSAIGNQSPYVVLGKSYRVLDEAKGYIKRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKT
LPLPSFALITNLDNGKSVVVRVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMLLARHDKRIAPTTA
NPVATTMAPMATTQPPTTNIAAAAKPDNPINHLQPLPTNAPLIAALTPIGSPTTIATRQPKSPTITTTNASETTPPSETT
KDTLTLTDSAHTSKVTATTTLDSILVQVASFTSHENASRALTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALEL
IRRITHLGLGRPEIVGL

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=212, Percent_Identity=34.9056603773585, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 44730; Mature: 44730

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRWYFIALVFDLMACSTTPHKSGTYPSPATSKITGGKPTQTANICPPTSPYAPAQELP
CCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
GTRDGYTKNGLYKPGIKDSIPDKLPDVSCIPEPLVAIEPRSAIGNQSPYVVLGKSYRVLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCEEEECCCCHHHH
EAKGYIKRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKTLPLPSFALITNLDNGKSVVV
HHHHHHHHHHHHHCCCEEECEECCCCEEEEEEEEHHHHCCCCCCCEEEEEECCCCCEEEE
RVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMLLARHDKRIAPTTA
EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCC
NPVATTMAPMATTQPPTTNIAAAAKPDNPINHLQPLPTNAPLIAALTPIGSPTTIATRQP
CCHHHHHCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCCCEEEEECCCCCCCEEEECCC
KSPTITTTNASETTPPSETTKDTLTLTDSAHTSKVTATTTLDSILVQVASFTSHENASRA
CCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHH
LTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALELIRRITHLGLGRPEIVGL
HHHHHHCCEECCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MNTRWYFIALVFDLMACSTTPHKSGTYPSPATSKITGGKPTQTANICPPTSPYAPAQELP
CCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
GTRDGYTKNGLYKPGIKDSIPDKLPDVSCIPEPLVAIEPRSAIGNQSPYVVLGKSYRVLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCEEEECCCCHHHH
EAKGYIKRGVASYYGTKFHGRLTSNREVYDMYAFTAAHKTLPLPSFALITNLDNGKSVVV
HHHHHHHHHHHHHCCCEEECEECCCCEEEEEEEEHHHHCCCCCCCEEEEEECCCCCEEEE
RVNDRGPFHDDRLIDLSYAAAVKLGFTENGLANVEVRVLSEDDNPMLLARHDKRIAPTTA
EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCC
NPVATTMAPMATTQPPTTNIAAAAKPDNPINHLQPLPTNAPLIAALTPIGSPTTIATRQP
CCHHHHHCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCCCEEEEECCCCCCCEEEECCC
KSPTITTTNASETTPPSETTKDTLTLTDSAHTSKVTATTTLDSILVQVASFTSHENASRA
CCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHH
LTQLTSAGIVGANLSAIVNSGRTFWRLRINAPNHDTALELIRRITHLGLGRPEIVGL
HHHHHHCCEECCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]