| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is pstS [H]
Identifier: 182681817
GI number: 182681817
Start: 1413715
End: 1414809
Strand: Direct
Name: pstS [H]
Synonym: XfasM23_1282
Alternate gene names: 182681817
Gene position: 1413715-1414809 (Clockwise)
Preceding gene: 182681816
Following gene: 182681818
Centisome position: 55.75
GC content: 49.41
Gene sequence:
>1095_bases ATGAAAGTACATTTTGCTGGTTTCACTCTCCTTTGTTTATGCACTGCCGTAACAATCACCGGCTGTAAACCTTCCAACGA TAACCAGTCAACAGGCGTCAGTCAGGATGCGAACAGTACGACGCCCCCCTCTGCCGAGCAAACCAAGAGTGTGAAGATTT CAGGCGCAGGTGCCTCATTTATATATCCACTGATCTCGCAATGGTCAGCCGACTACAACGCCGCCACTGGCAATAAAATT AACTATCAGTCAATCGGCTCAGGCGGTGGTATTGCCCAAATCAAAGCCGCCACAATCGATTTTGGTTCTTCTGACAAGCC ACTTGACAGCAGCGAACTGACCAAAGCGGGTCTAGGGCAGTTTCCATCGGCCATAGGCGGCGTCGTGCCGGTGGTCAATC TAGACAACATCGAACCAGGCAAACTACGCCTTACAGGCCCCCTGCTTGCAGATATTTTCCTGGGGAAGATCAGTAAGTGG AATGACGCAGCAATCATCAGCGCCAATCCGGGGTTACATCTTCCCGACACTAAAATCAACATCGTGCATCGTTCCGATGG CTCTGGCACGACATTCAATTTCAGCAACTATCTATCAAAAGTCAGCGCGGAATGGAAACAGAAAGTGGGTGAAGGCACTT CAGTGCAGTGGCCCGGAGGCGTCGGCGGTAAAGGCAACGAAGGTGTAGCCTCATATGTTCAACAGATTAAAGGCTCGATC GGCTACGTTGAACTGGCGTATGCGCTTCAGAACAAAATGTCATATACAGCACTCCAGAACGCTGCTGGTCAATGGGTACA ACCAAGCGCAGAAAGCTTTGCAGCCGCCGCATCCAACGCAGACTGGAGCAATGCAAAGGATTTCAATTTGGTCATCACCA ACGCTACTGGGGAAGGCGCTTGGCCAATCACAGCCACAAACTTTATATTGATGCCCAAGCAAACTAAGGATGCAGCGCAA AGAAAAGCCACTCTAGACTTCTTCAAGTGGTGCTTTGAAAATGGGCAGAAACAAGCCAATGAATTACACTACGTGCCATT GCCACCAAATCTGGTGAAGCAAATCGAAGCTTATTGGGCAAGCGAATTCAAGTAA
Upstream 100 bases:
>100_bases CACAATGTCACCGATTTGAAATAAAAATATCATTTCATGTCGCTACCTTTTGGCACTTTAACTAGCAATTTTAATTAAAT TAGGAACAATCGGAGTTTTC
Downstream 100 bases:
>100_bases TGTGTTACGCATCCACACGCATTAAGAATTTTGCTTGGTACGTTATCCGTACAGCGTAACAGCTATGGCGCATCTCACTC CTCCAAGCCACAGGTAACAC
Product: phosphate ABC transporter periplasmic phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MKVHFAGFTLLCLCTAVTITGCKPSNDNQSTGVSQDANSTTPPSAEQTKSVKISGAGASFIYPLISQWSADYNAATGNKI NYQSIGSGGGIAQIKAATIDFGSSDKPLDSSELTKAGLGQFPSAIGGVVPVVNLDNIEPGKLRLTGPLLADIFLGKISKW NDAAIISANPGLHLPDTKINIVHRSDGSGTTFNFSNYLSKVSAEWKQKVGEGTSVQWPGGVGGKGNEGVASYVQQIKGSI GYVELAYALQNKMSYTALQNAAGQWVQPSAESFAAAASNADWSNAKDFNLVITNATGEGAWPITATNFILMPKQTKDAAQ RKATLDFFKWCFENGQKQANELHYVPLPPNLVKQIEAYWASEFK
Sequences:
>Translated_364_residues MKVHFAGFTLLCLCTAVTITGCKPSNDNQSTGVSQDANSTTPPSAEQTKSVKISGAGASFIYPLISQWSADYNAATGNKI NYQSIGSGGGIAQIKAATIDFGSSDKPLDSSELTKAGLGQFPSAIGGVVPVVNLDNIEPGKLRLTGPLLADIFLGKISKW NDAAIISANPGLHLPDTKINIVHRSDGSGTTFNFSNYLSKVSAEWKQKVGEGTSVQWPGGVGGKGNEGVASYVQQIKGSI GYVELAYALQNKMSYTALQNAAGQWVQPSAESFAAAASNADWSNAKDFNLVITNATGEGAWPITATNFILMPKQTKDAAQ RKATLDFFKWCFENGQKQANELHYVPLPPNLVKQIEAYWASEFK >Mature_364_residues MKVHFAGFTLLCLCTAVTITGCKPSNDNQSTGVSQDANSTTPPSAEQTKSVKISGAGASFIYPLISQWSADYNAATGNKI NYQSIGSGGGIAQIKAATIDFGSSDKPLDSSELTKAGLGQFPSAIGGVVPVVNLDNIEPGKLRLTGPLLADIFLGKISKW NDAAIISANPGLHLPDTKINIVHRSDGSGTTFNFSNYLSKVSAEWKQKVGEGTSVQWPGGVGGKGNEGVASYVQQIKGSI GYVELAYALQNKMSYTALQNAAGQWVQPSAESFAAAASNADWSNAKDFNLVITNATGEGAWPITATNFILMPKQTKDAAQ RKATLDFFKWCFENGQKQANELHYVPLPPNLVKQIEAYWASEFK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=312, Percent_Identity=51.9230769230769, Blast_Score=331, Evalue=4e-92,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 38668; Mature: 38668
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVHFAGFTLLCLCTAVTITGCKPSNDNQSTGVSQDANSTTPPSAEQTKSVKISGAGASF CEEEECHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH IYPLISQWSADYNAATGNKINYQSIGSGGGIAQIKAATIDFGSSDKPLDSSELTKAGLGQ HHHHHHHHCCCCCCCCCCEEEHEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHC FPSAIGGVVPVVNLDNIEPGKLRLTGPLLADIFLGKISKWNDAAIISANPGLHLPDTKIN CHHHHCCCEEEEECCCCCCCCEEECHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEE IVHRSDGSGTTFNFSNYLSKVSAEWKQKVGEGTSVQWPGGVGGKGNEGVASYVQQIKGSI EEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCC GYVELAYALQNKMSYTALQNAAGQWVQPSAESFAAAASNADWSNAKDFNLVITNATGEGA CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC WPITATNFILMPKQTKDAAQRKATLDFFKWCFENGQKQANELHYVPLPPNLVKQIEAYWA CCEEECCEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCHHHHHHHHHHHH SEFK HCCC >Mature Secondary Structure MKVHFAGFTLLCLCTAVTITGCKPSNDNQSTGVSQDANSTTPPSAEQTKSVKISGAGASF CEEEECHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH IYPLISQWSADYNAATGNKINYQSIGSGGGIAQIKAATIDFGSSDKPLDSSELTKAGLGQ HHHHHHHHCCCCCCCCCCEEEHEECCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHC FPSAIGGVVPVVNLDNIEPGKLRLTGPLLADIFLGKISKWNDAAIISANPGLHLPDTKIN CHHHHCCCEEEEECCCCCCCCEEECHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEE IVHRSDGSGTTFNFSNYLSKVSAEWKQKVGEGTSVQWPGGVGGKGNEGVASYVQQIKGSI EEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCC GYVELAYALQNKMSYTALQNAAGQWVQPSAESFAAAASNADWSNAKDFNLVITNATGEGA CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC WPITATNFILMPKQTKDAAQRKATLDFFKWCFENGQKQANELHYVPLPPNLVKQIEAYWA CCEEECCEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCHHHHHHHHHHHH SEFK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]