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The map label for this gene is sodA [H]

Identifier: 182681471

GI number: 182681471

Start: 1092357

End: 1093097

Strand: Reverse

Name: sodA [H]

Synonym: XfasM23_0923

Alternate gene names: 182681471

Gene position: 1093097-1092357 (Counterclockwise)

Preceding gene: 182681473

Following gene: 182681470

Centisome position: 43.11

GC content: 50.2

Gene sequence:

>741_bases
ATGTTTTTTTTGAGACAAGGTCACTTAACACTCTGCTTGATTGCTGCATTGCTTGCTTCGTCCCCATCTTTTGCTTCGAC
ACAACCACAAACCGCGCCGTTCACACTACCGCCACTCCCCTACGCTGTCAGCGCGCTGGAGCCGGCGATTGATACGCAGA
CCATGACGTTACATCACGACTTCCATCACAAGGCCTACGTAGATAACCTCAATGCTGCAATCAAGGATATACCGACACTC
TCCGGAAAAACGCTGGAGCAACTTCTGGCCATCGCATCCACGTTGCCGCCAGTGGTACGAAACAACGCCGGCGGCCACTG
GAATCACAGCGAGTTCTGGAAGATGATGGCTCCGGTTGGCAAGGGAGGGAAACCATCGGCAGCGCTGGAAGCACAAATTA
AAAAGGACTTTGGTTCACTAGACGCTTTCAAGGAGCGCTTCAACAAAGCCGCAACAGGTCGTTTCGGCTCGGGCTGGGCT
TGGATGATATTGACCAGTAGCGGACTGCAGATCACATCAACACCCAATCAGGATAACCCACTGATGGATGTGGTAGAGGT
ACGCGGTCAGCCATTGCTAGCCTTAGATGTTTGGGAGCATGCGTACTATCTCAAGTACAAGTACAAACGTGCTGATTATC
TGAACGCTTGGTGGACAGTTGTGAACTGGAATGAGGTCAACCATTTATTCGAAGTGGCAAAAAAGGATCAACATAAGCGA
ATCATTAATCCCCAGCATTAA

Upstream 100 bases:

>100_bases
GCGTGAAAATGATCACATATTTTGTTTTCATCTGTATTTTGCTTGACAGGGTGTTAGATTCTGTACTCCATCGCAACCAG
ATGATCTTTGGAGAGATAGC

Downstream 100 bases:

>100_bases
CACTGAACAACACAGAATGATTGCTCTATCTTCAAGCAAACTCGGACTTTCATCCTGAGTCAGACATGCAATCACCAGGC
GGCCGATCATAGTATCAGGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MFFLRQGHLTLCLIAALLASSPSFASTQPQTAPFTLPPLPYAVSALEPAIDTQTMTLHHDFHHKAYVDNLNAAIKDIPTL
SGKTLEQLLAIASTLPPVVRNNAGGHWNHSEFWKMMAPVGKGGKPSAALEAQIKKDFGSLDAFKERFNKAATGRFGSGWA
WMILTSSGLQITSTPNQDNPLMDVVEVRGQPLLALDVWEHAYYLKYKYKRADYLNAWWTVVNWNEVNHLFEVAKKDQHKR
IINPQH

Sequences:

>Translated_246_residues
MFFLRQGHLTLCLIAALLASSPSFASTQPQTAPFTLPPLPYAVSALEPAIDTQTMTLHHDFHHKAYVDNLNAAIKDIPTL
SGKTLEQLLAIASTLPPVVRNNAGGHWNHSEFWKMMAPVGKGGKPSAALEAQIKKDFGSLDAFKERFNKAATGRFGSGWA
WMILTSSGLQITSTPNQDNPLMDVVEVRGQPLLALDVWEHAYYLKYKYKRADYLNAWWTVVNWNEVNHLFEVAKKDQHKR
IINPQH
>Mature_246_residues
MFFLRQGHLTLCLIAALLASSPSFASTQPQTAPFTLPPLPYAVSALEPAIDTQTMTLHHDFHHKAYVDNLNAAIKDIPTL
SGKTLEQLLAIASTLPPVVRNNAGGHWNHSEFWKMMAPVGKGGKPSAALEAQIKKDFGSLDAFKERFNKAATGRFGSGWA
WMILTSSGLQITSTPNQDNPLMDVVEVRGQPLLALDVWEHAYYLKYKYKRADYLNAWWTVVNWNEVNHLFEVAKKDQHKR
IINPQH

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=229, Percent_Identity=43.2314410480349, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI67782305, Length=229, Percent_Identity=43.2314410480349, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI67782309, Length=227, Percent_Identity=37.8854625550661, Blast_Score=129, Evalue=2e-30,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=49.2753623188406, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=42.7835051546392, Blast_Score=150, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=41.1764705882353, Blast_Score=151, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI17569479, Length=204, Percent_Identity=41.1764705882353, Blast_Score=150, Evalue=7e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=225, Percent_Identity=37.3333333333333, Blast_Score=138, Evalue=7e-34,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=40.8866995073892, Blast_Score=147, Evalue=6e-36,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 27559; Mature: 27559

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFLRQGHLTLCLIAALLASSPSFASTQPQTAPFTLPPLPYAVSALEPAIDTQTMTLHHD
CCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCEEEEEECC
FHHKAYVDNLNAAIKDIPTLSGKTLEQLLAIASTLPPVVRNNAGGHWNHSEFWKMMAPVG
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCC
KGGKPSAALEAQIKKDFGSLDAFKERFNKAATGRFGSGWAWMILTSSGLQITSTPNQDNP
CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCC
LMDVVEVRGQPLLALDVWEHAYYLKYKYKRADYLNAWWTVVNWNEVNHLFEVAKKDQHKR
HHHHHHHCCCCEEEEEHHHCEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHCC
IINPQH
CCCCCC
>Mature Secondary Structure
MFFLRQGHLTLCLIAALLASSPSFASTQPQTAPFTLPPLPYAVSALEPAIDTQTMTLHHD
CCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCEEEEEECC
FHHKAYVDNLNAAIKDIPTLSGKTLEQLLAIASTLPPVVRNNAGGHWNHSEFWKMMAPVG
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCC
KGGKPSAALEAQIKKDFGSLDAFKERFNKAATGRFGSGWAWMILTSSGLQITSTPNQDNP
CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCCC
LMDVVEVRGQPLLALDVWEHAYYLKYKYKRADYLNAWWTVVNWNEVNHLFEVAKKDQHKR
HHHHHHHCCCCEEEEEHHHCEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHCC
IINPQH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9074511 [H]