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The map label for this gene is yccS [H]

Identifier: 182681424

GI number: 182681424

Start: 1031965

End: 1034067

Strand: Reverse

Name: yccS [H]

Synonym: XfasM23_0874

Alternate gene names: 182681424

Gene position: 1034067-1031965 (Counterclockwise)

Preceding gene: 182681425

Following gene: 182681421

Centisome position: 40.78

GC content: 51.64

Gene sequence:

>2103_bases
ATGTGCTGGAAGACGAACCACCTGGATGCAGTCGGAAGCCTTTTCTTGGGAATCATTGCCAGTGCTATCGCAGAGACTGA
CGATAACTGGTTAGGCCGTAGCAAGGCGGTGTTGCTATCGCTTTTGTGTTTTGTTGGCGCCGGTGCCAGCGTGGTGTTTT
TATTCCCGCATCCAGGATGGTTGGTGCTGAGTATGGCGATCTCAACGTTCACGTTGACTTTACTCGGTGCACTCGGCGAG
CGTTATGCCTTGATCGCTCAAGCTACTGTGGCTTTAGCCATCTACGCAATGATCGACGTTGACCGTGGCGGGGATCAGCC
GTGGCATGGTGTCACGTTATTGATGATCGGTGCTACTTGGTATGGTGTGCTATCGATTCTATGGGTCCTGTTATTTGCCA
ACCGCCCAGTGCGCGAACGGCTGTCACGATTGTTTGAAGAGTTAGGCCACTACCTACAACTTAAAGCCGATTTACTGGAA
CCAGTGCGGCAAAGCGATTTATATGCCATACGCTTGGCGCTGTCTGAGCAAAACGCACGCGTAGTCACCGCACTGAACGA
TGTAAAAGACGTGATCATCTCTCGGTTCGGTCGCTCTGGTCGGCCCGGCATGCGCTCTGGGGTGTACTTTCGACTGTATT
ACATGGCTCAGGAGTTTCACGAACGCGCTAGCTCCTCACACTATCCTTATGAAGCGCTGACCGAGGCATTTTTCCACAGC
GACATCCTGTATCGCTGCCAACGCCTGCTCAGCCTTCAGGGGATACTCTGCGCCGGATTGGGGAAAGCAATCCAGCTCGG
TCGTCCGTTTATTTATGGTGATGATACGAGTCTGGCCAGCGAAGATTTATACAAGTCGCTAAGCTTCTTAAAAACCCGCA
CCAAAGCAGCACAAAAGCGCTTACTGGGTGCGCTGGATCTGTTAGTAAGCAATCTGCAAACAATCGAGCGACGTCTCTTT
GAAGCTGCACAGTTGGATACCGCCACCGAGCAGATGGACATGCGCTTAAGCGATTCATCCCCACACAGTTTGAACGAAAT
GATGACACGCCTGGGGGAGCAACTCACCCCCAATTCGATACTGTTCCGACACGGTCTACGTATGGCCATCGCATTAAGTG
TCGGCTATTTGGTGGTCCATTTGATGACTACCATCAATGGCTACTGGATTCTATTAACGACTGCCTTCGTCTGCCGCCCC
CACTACGACGCGACGCGGCTGCGCTTGATACAGAACATTCTGGGTACGTTGCTTGGATTGCTGGTTGCCTGGGTGTTAAT
GCAATTGTTCTCCAGCATCACATTACATTTGCTGTTTGCTCTGCTAAGTACGCTTGTCTTTATCCTCACCCGTACCGAAC
GTTATATGGTTGGCACGACTGCGGTTACAGCGATGGCGCTGTTCTGTTTTAGCCTCATCGGCGATGGCTTTGTAATGATC
TGGCCGCGTTTGTTGGATACCTTGATCGGCTGTGCGATTGCTGCTGCTGCGGCATTCTTGATCCTTCCTGACTGGCAAGG
CCGACGGCTGCATAAGATCTGCGCTCATGTGATTAACACTTGCAAGAATTATCTGGAAAAAGTCCTCGAATATTATCGTG
ATCAGCCCGTTGATGACCTGGAGTACCGTATTGCACGTCGCGATATGAATAATGCGGATGCGGCCTTATCAGCAGCGCTA
GCACATATGCTGCGTGAGCCTGGGCGCTATCGCCGCAACCTTGATACTGGATTCCGCTTCCTGGCACTTACCAACACGTT
ACTAGGTCATCTGTCGGCGCTAGGGGCACATCGCGCACCACTGGCAGACATATCAAACACAGCGCAGTTAGACGAAGCGA
GTGCTTATGTAGGAGAAGGATTACAAGCCATAGCACGTGCATTGGAGAAACGCAAAGCCCCTTCTATTATGAAAGAAACA
CAGATCGAACAAGAGTTGATTGATGCACTGGAAGCCATCAAGGAATCTGAAGACCGCACCCGTCACTTGCTCGCGATTCA
GTTGGCGTTGCTATTGCGATTGTTACCGCAACTACGTGCCGGAGTCACTGCACTGATGCAGCCGGCACCGACTGAAGACA
ATCCGGATCTGGCCACCACGTAA

Upstream 100 bases:

>100_bases
CTGGATAAGTAACCTTAAGTTCGGGTTCAATCATCTGTGGACACATGAGAAAACCAGCTACTTCCTGCGCGTGCTGATCG
CACTGTCGGTCACAGTTGCT

Downstream 100 bases:

>100_bases
ACCATCTGTTCAGCACCTGATGGAGGAATAATGCTCTGCATCACTGATCAAAAGCGACTGTATGGCTTTCCCACTCCAAG
GGTGCTGAGAAGATTGGAAA

Product: YccS/YhfK family integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 700; Mature: 700

Protein sequence:

>700_residues
MCWKTNHLDAVGSLFLGIIASAIAETDDNWLGRSKAVLLSLLCFVGAGASVVFLFPHPGWLVLSMAISTFTLTLLGALGE
RYALIAQATVALAIYAMIDVDRGGDQPWHGVTLLMIGATWYGVLSILWVLLFANRPVRERLSRLFEELGHYLQLKADLLE
PVRQSDLYAIRLALSEQNARVVTALNDVKDVIISRFGRSGRPGMRSGVYFRLYYMAQEFHERASSSHYPYEALTEAFFHS
DILYRCQRLLSLQGILCAGLGKAIQLGRPFIYGDDTSLASEDLYKSLSFLKTRTKAAQKRLLGALDLLVSNLQTIERRLF
EAAQLDTATEQMDMRLSDSSPHSLNEMMTRLGEQLTPNSILFRHGLRMAIALSVGYLVVHLMTTINGYWILLTTAFVCRP
HYDATRLRLIQNILGTLLGLLVAWVLMQLFSSITLHLLFALLSTLVFILTRTERYMVGTTAVTAMALFCFSLIGDGFVMI
WPRLLDTLIGCAIAAAAAFLILPDWQGRRLHKICAHVINTCKNYLEKVLEYYRDQPVDDLEYRIARRDMNNADAALSAAL
AHMLREPGRYRRNLDTGFRFLALTNTLLGHLSALGAHRAPLADISNTAQLDEASAYVGEGLQAIARALEKRKAPSIMKET
QIEQELIDALEAIKESEDRTRHLLAIQLALLLRLLPQLRAGVTALMQPAPTEDNPDLATT

Sequences:

>Translated_700_residues
MCWKTNHLDAVGSLFLGIIASAIAETDDNWLGRSKAVLLSLLCFVGAGASVVFLFPHPGWLVLSMAISTFTLTLLGALGE
RYALIAQATVALAIYAMIDVDRGGDQPWHGVTLLMIGATWYGVLSILWVLLFANRPVRERLSRLFEELGHYLQLKADLLE
PVRQSDLYAIRLALSEQNARVVTALNDVKDVIISRFGRSGRPGMRSGVYFRLYYMAQEFHERASSSHYPYEALTEAFFHS
DILYRCQRLLSLQGILCAGLGKAIQLGRPFIYGDDTSLASEDLYKSLSFLKTRTKAAQKRLLGALDLLVSNLQTIERRLF
EAAQLDTATEQMDMRLSDSSPHSLNEMMTRLGEQLTPNSILFRHGLRMAIALSVGYLVVHLMTTINGYWILLTTAFVCRP
HYDATRLRLIQNILGTLLGLLVAWVLMQLFSSITLHLLFALLSTLVFILTRTERYMVGTTAVTAMALFCFSLIGDGFVMI
WPRLLDTLIGCAIAAAAAFLILPDWQGRRLHKICAHVINTCKNYLEKVLEYYRDQPVDDLEYRIARRDMNNADAALSAAL
AHMLREPGRYRRNLDTGFRFLALTNTLLGHLSALGAHRAPLADISNTAQLDEASAYVGEGLQAIARALEKRKAPSIMKET
QIEQELIDALEAIKESEDRTRHLLAIQLALLLRLLPQLRAGVTALMQPAPTEDNPDLATT
>Mature_700_residues
MCWKTNHLDAVGSLFLGIIASAIAETDDNWLGRSKAVLLSLLCFVGAGASVVFLFPHPGWLVLSMAISTFTLTLLGALGE
RYALIAQATVALAIYAMIDVDRGGDQPWHGVTLLMIGATWYGVLSILWVLLFANRPVRERLSRLFEELGHYLQLKADLLE
PVRQSDLYAIRLALSEQNARVVTALNDVKDVIISRFGRSGRPGMRSGVYFRLYYMAQEFHERASSSHYPYEALTEAFFHS
DILYRCQRLLSLQGILCAGLGKAIQLGRPFIYGDDTSLASEDLYKSLSFLKTRTKAAQKRLLGALDLLVSNLQTIERRLF
EAAQLDTATEQMDMRLSDSSPHSLNEMMTRLGEQLTPNSILFRHGLRMAIALSVGYLVVHLMTTINGYWILLTTAFVCRP
HYDATRLRLIQNILGTLLGLLVAWVLMQLFSSITLHLLFALLSTLVFILTRTERYMVGTTAVTAMALFCFSLIGDGFVMI
WPRLLDTLIGCAIAAAAAFLILPDWQGRRLHKICAHVINTCKNYLEKVLEYYRDQPVDDLEYRIARRDMNNADAALSAAL
AHMLREPGRYRRNLDTGFRFLALTNTLLGHLSALGAHRAPLADISNTAQLDEASAYVGEGLQAIARALEKRKAPSIMKET
QIEQELIDALEAIKESEDRTRHLLAIQLALLLRLLPQLRAGVTALMQPAPTEDNPDLATT

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=692, Percent_Identity=36.5606936416185, Blast_Score=397, Evalue=1e-111,
Organism=Escherichia coli, GI87082248, Length=258, Percent_Identity=27.1317829457364, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78086; Mature: 78086

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCWKTNHLDAVGSLFLGIIASAIAETDDNWLGRSKAVLLSLLCFVGAGASVVFLFPHPGW
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH
LVLSMAISTFTLTLLGALGERYALIAQATVALAIYAMIDVDRGGDQPWHGVTLLMIGATW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHH
YGVLSILWVLLFANRPVRERLSRLFEELGHYLQLKADLLEPVRQSDLYAIRLALSEQNAR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCCH
VVTALNDVKDVIISRFGRSGRPGMRSGVYFRLYYMAQEFHERASSSHYPYEALTEAFFHS
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DILYRCQRLLSLQGILCAGLGKAIQLGRPFIYGDDTSLASEDLYKSLSFLKTRTKAAQKR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLGALDLLVSNLQTIERRLFEAAQLDTATEQMDMRLSDSSPHSLNEMMTRLGEQLTPNSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHH
LFRHGLRMAIALSVGYLVVHLMTTINGYWILLTTAFVCRPHYDATRLRLIQNILGTLLGL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LVAWVLMQLFSSITLHLLFALLSTLVFILTRTERYMVGTTAVTAMALFCFSLIGDGFVMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
WPRLLDTLIGCAIAAAAAFLILPDWQGRRLHKICAHVINTCKNYLEKVLEYYRDQPVDDL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EYRIARRDMNNADAALSAALAHMLREPGRYRRNLDTGFRFLALTNTLLGHLSALGAHRAP
HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC
LADISNTAQLDEASAYVGEGLQAIARALEKRKAPSIMKETQIEQELIDALEAIKESEDRT
CHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RHLLAIQLALLLRLLPQLRAGVTALMQPAPTEDNPDLATT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MCWKTNHLDAVGSLFLGIIASAIAETDDNWLGRSKAVLLSLLCFVGAGASVVFLFPHPGW
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH
LVLSMAISTFTLTLLGALGERYALIAQATVALAIYAMIDVDRGGDQPWHGVTLLMIGATW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHH
YGVLSILWVLLFANRPVRERLSRLFEELGHYLQLKADLLEPVRQSDLYAIRLALSEQNAR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCCH
VVTALNDVKDVIISRFGRSGRPGMRSGVYFRLYYMAQEFHERASSSHYPYEALTEAFFHS
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DILYRCQRLLSLQGILCAGLGKAIQLGRPFIYGDDTSLASEDLYKSLSFLKTRTKAAQKR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLGALDLLVSNLQTIERRLFEAAQLDTATEQMDMRLSDSSPHSLNEMMTRLGEQLTPNSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHH
LFRHGLRMAIALSVGYLVVHLMTTINGYWILLTTAFVCRPHYDATRLRLIQNILGTLLGL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LVAWVLMQLFSSITLHLLFALLSTLVFILTRTERYMVGTTAVTAMALFCFSLIGDGFVMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
WPRLLDTLIGCAIAAAAAFLILPDWQGRRLHKICAHVINTCKNYLEKVLEYYRDQPVDDL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EYRIARRDMNNADAALSAALAHMLREPGRYRRNLDTGFRFLALTNTLLGHLSALGAHRAP
HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCC
LADISNTAQLDEASAYVGEGLQAIARALEKRKAPSIMKETQIEQELIDALEAIKESEDRT
CHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RHLLAIQLALLLRLLPQLRAGVTALMQPAPTEDNPDLATT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]