| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is mnmG [H]
Identifier: 182681369
GI number: 182681369
Start: 963582
End: 965471
Strand: Reverse
Name: mnmG [H]
Synonym: XfasM23_0817
Alternate gene names: 182681369
Gene position: 965471-963582 (Counterclockwise)
Preceding gene: 182681370
Following gene: 182681362
Centisome position: 38.08
GC content: 57.72
Gene sequence:
>1890_bases ATGACTGATTCCTTCTATCGCTACGACGTTATCGTCATCGGTGCTGGCCATGCCGGTAGCGAAGCCGCTCTGGCTGCCGC ACGGACCGGAGCACACACCCTATTGCTGACCCACAATATTGAAACCATCGGTGCAATGAGCTGTAACCCAGCCATTGGTG GCATCGGCAAGGGCCACCTGGTTAAAGAAATCGACGCACTCGGCGGAGCAATGGCACACGCCGCAGACGCCGCTGGCATC CAATGGCGCACTCTCAACGCATCCAAAGGTCCGGCCGTACGCGCGACGCGCTGCCAAGCAGACCGCTCCTTATACCGTGC CGCAATCCGGCAGATGATTGAAGGCCAGGCACGCCTCAACATATTCCAAGCAGAAGTGGACGACCTGCTGTTTGAAGGGG ACACTGTATGCGGTGCGATTACACACACCGGGTTGCATTTCAAAGCGCCTGCCGTCGTCCTTACCGCCGGCACATTCCTT GCCGGAAAAATCCATATCGGACCAACCCAATACGCCGCGGGGCGCATGGGCGACCCGCCAGCAACCATGCTAGCCGCCCG CCTGCGGGAACGTCTATTGACAGTTGCACGGCTCAAAACAGGGACCCCACCACGGATTGATGGCCGGACGCTGAACTACA CAGCGATGCAAGAACAACCAGGTGACGCCCCACGCCCTACCATGTCCTTCATAGGAAACTCAGCTTCCCATCCCCCTCAA GTCAGCTGCTGGATTACTCAAACCACCGAACGCACGCATGAGATCATCCGGGCCGCCCTACACCGCTCGCCGCTATACAG CGGGCAAATTGAGGGCACCGGCCCACGCTATTGCCCATCAATTGAAGACAAGGTGGTGCGCTTCGCCGAGAAAAATAGCC ACCAAATTTTCGTTGAACCTGAAGGGTTGAACGTCATCGACATCTACCCGAACGGCATCTCAACCTCATTGCCCTTCGAC GTACAGTTAGAGCTGGTACGCAGCATCCGTGGGTTCGAACAAGCACACATCACCCGCCCCGGCTATGCCATCGAATACGA CTTCTTCGACCCACGCGGACTCAAAGCATCACTGGAAACCAAAGCAATCGCTGGACTGTTTTTCGCTGGACAGATCAACG GCACCACCGGCTACGAAGAAGCAGCCGCCCAAGGCCTGCTGGCTGGACTCAATGCCGCACGCCATGTGCGTGGGCTATCC TCCTGGACACCACGCCGCGACCAAGCCTACCTGGGTGTTCTTGTTGACGATTTGATCACCCATGGCACCAACGAACCGTA CCGCATGTTCACCAGCCGAGCAGAGTACCGATTACAACTGCGCGAAGACAACGCCGACGCACGCCTCACCGCAATCGGCC GTGACCTAGGCCTCGTCGACGATGCACGATGGGCACACTTCAACGCGAAACAGGAAGCAGTCGCCCGTGAATGTGGACGC CTGTCCGCGCTGTGGGCCACACCAGGCAACGCCCTAGGTCGTGAAGTCAAAGAAACCCTGGGAGTGACGCTCAGCCGTGA AACCAACATCATTGACCTTATGAAGCGGCCGGAACTGGATTACGCTGCACTGATGCGCGTCCCCTCCCTGGGTCCTGGCG TCGATGATGCCCAAGTCGCTGAGCAAGTCGAGATCAGCGTTAAATACGCTGGTTATTTAAACCGCCAGTCCGAAGAAATT ACCCGCCAGCAGCGCCACGAAGCAACTGCAATCCCACTTGAATTCGACTATGCCGCAGTGCGAGGACTCTCCACAGAAGT CTTACAAAAGCTGCAACACATACAGCCACAGACAGTGGGTCAAGCGCAACGCATCCCGGGGATGACGCCTGCAGCAATCT CGTTATTACTGGTACACCTGGAACGCATGCGTCGCAACCGCGTCGCCTGA
Upstream 100 bases:
>100_bases TCACACAAAACACATAAAATTCCATCCAAGCTGCCTCCCTACTCCAAGCAGCCACTTCGAGTCATCCCGCCCATCCTTCT CCACTACCGCCATTGCACAC
Downstream 100 bases:
>100_bases TTCCAATCGCATCACTACACCTACCATGGCAAATAGCTATGCGTCACCGAGGTTGACGAAGCATTGCACCCACCAGGCTG TGGCTGGAGAGACTCCCTAC
Product: tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 629; Mature: 628
Protein sequence:
>629_residues MTDSFYRYDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDALGGAMAHAADAAGI QWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVDDLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFL AGKIHIGPTQYAAGRMGDPPATMLAARLRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQ VSCWITQTTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVIDIYPNGISTSLPFD VQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVRGLS SWTPRRDQAYLGVLVDDLITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGR LSALWATPGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVAEQVEISVKYAGYLNRQSEEI TRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPGMTPAAISLLLVHLERMRRNRVA
Sequences:
>Translated_629_residues MTDSFYRYDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDALGGAMAHAADAAGI QWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVDDLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFL AGKIHIGPTQYAAGRMGDPPATMLAARLRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQ VSCWITQTTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVIDIYPNGISTSLPFD VQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVRGLS SWTPRRDQAYLGVLVDDLITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGR LSALWATPGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVAEQVEISVKYAGYLNRQSEEI TRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPGMTPAAISLLLVHLERMRRNRVA >Mature_628_residues TDSFYRYDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHLVKEIDALGGAMAHAADAAGIQ WRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEVDDLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLA GKIHIGPTQYAAGRMGDPPATMLAARLRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQV SCWITQTTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEPEGLNVIDIYPNGISTSLPFDV QLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLETKAIAGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSS WTPRRDQAYLGVLVDDLITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGRL SALWATPGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVAEQVEISVKYAGYLNRQSEEIT RQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVGQAQRIPGMTPAAISLLLVHLERMRRNRVA
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=646, Percent_Identity=43.1888544891641, Blast_Score=473, Evalue=1e-133, Organism=Homo sapiens, GI19882217, Length=671, Percent_Identity=41.5797317436662, Blast_Score=459, Evalue=1e-129, Organism=Homo sapiens, GI183227703, Length=686, Percent_Identity=40.6705539358601, Blast_Score=454, Evalue=1e-127, Organism=Escherichia coli, GI2367273, Length=615, Percent_Identity=64.7154471544715, Blast_Score=810, Evalue=0.0, Organism=Caenorhabditis elegans, GI17534255, Length=620, Percent_Identity=39.8387096774194, Blast_Score=443, Evalue=1e-124, Organism=Saccharomyces cerevisiae, GI6321202, Length=638, Percent_Identity=42.0062695924765, Blast_Score=479, Evalue=1e-136, Organism=Drosophila melanogaster, GI24658174, Length=633, Percent_Identity=44.5497630331754, Blast_Score=480, Evalue=1e-135,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 68614; Mature: 68483
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSFYRYDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHL CCCCEEEEEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCCCCCCHH VKEIDALGGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLN HHHHHHHCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEE IFQAEVDDLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPP EHHHHHHHHHCCCCCEEEEHEECCEEEECCEEEEEECCEEEEEEEECCCHHCCCCCCCCH ATMLAARLRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQ HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCE VSCWITQTTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEP EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEC EGLNVIDIYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLET CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHCCCCCEEEEECCCCCCCCCCCHHH KAIAGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLIT HHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH HGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGR CCCCCCHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC LSALWATPGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVA EEEEECCCCHHHHHHHHHHHCEEEECCCCHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHH EQVEISVKYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVG HHHEEEEEECCHHCCCHHHHHHHHHHCCEECEEEECHHHHHCCCHHHHHHHHHCCCCCCC QAQRIPGMTPAAISLLLVHLERMRRNRVA HHHHCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TDSFYRYDVIVIGAGHAGSEAALAAARTGAHTLLLTHNIETIGAMSCNPAIGGIGKGHL CCCEEEEEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCCCCCCHH VKEIDALGGAMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLN HHHHHHHCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEE IFQAEVDDLLFEGDTVCGAITHTGLHFKAPAVVLTAGTFLAGKIHIGPTQYAAGRMGDPP EHHHHHHHHHCCCCCEEEEHEECCEEEECCEEEEEECCEEEEEEEECCCHHCCCCCCCCH ATMLAARLRERLLTVARLKTGTPPRIDGRTLNYTAMQEQPGDAPRPTMSFIGNSASHPPQ HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCE VSCWITQTTERTHEIIRAALHRSPLYSGQIEGTGPRYCPSIEDKVVRFAEKNSHQIFVEP EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEC EGLNVIDIYPNGISTSLPFDVQLELVRSIRGFEQAHITRPGYAIEYDFFDPRGLKASLET CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHCCCCCEEEEECCCCCCCCCCCHHH KAIAGLFFAGQINGTTGYEEAAAQGLLAGLNAARHVRGLSSWTPRRDQAYLGVLVDDLIT HHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH HGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARECGR CCCCCCHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC LSALWATPGNALGREVKETLGVTLSRETNIIDLMKRPELDYAALMRVPSLGPGVDDAQVA EEEEECCCCHHHHHHHHHHHCEEEECCCCHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHH EQVEISVKYAGYLNRQSEEITRQQRHEATAIPLEFDYAAVRGLSTEVLQKLQHIQPQTVG HHHEEEEEECCHHCCCHHHHHHHHHHCCEECEEEECHHHHHCCCHHHHHHHHHCCCCCCC QAQRIPGMTPAAISLLLVHLERMRRNRVA HHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]