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The map label for this gene is ycfD [H]

Identifier: 182681357

GI number: 182681357

Start: 951001

End: 952269

Strand: Reverse

Name: ycfD [H]

Synonym: XfasM23_0804

Alternate gene names: 182681357

Gene position: 952269-951001 (Counterclockwise)

Preceding gene: 182681358

Following gene: 182681356

Centisome position: 37.55

GC content: 56.19

Gene sequence:

>1269_bases
ATGAAACGTTCCGTCTCTTTATTCCCGTTTGAAATTCAAGCAACCGATCAATATCCATTAGGCATGCCGGAGGAATATTT
CCTGCATCACTATTGGCAAAAGCGCCCACTGCTGATCCGCAACGCGTTTCCTGACTTCCACAGCCCAGTGACTCCCGAGG
ATCTCGCCGGACTGGCTTGCGAAGAGGGTGTTCTCTGCCGCCTGGTCCGGCACAACCGCAACACCGACACCTGGGAGGTA
CGTCACGGACCTTTCCAAGAAGAGGAATTTCCCAAACTGCCTGACCATGATTGGACCCTGCTGGTCCAGGATGTAGATAA
GTGGGACCAAGATGTGCGCGCACTCCTGGAACATTTCCGCTTTCTGCCACGCTGGCGGATCGATGACATCATGATTAGCT
TCGCCGCCACTCACGGCTCGGTTGGTGCGCATGTCGACCAATACGATGTTTTCCTACTCCAGGGCCAAGGGCATCGCCAT
TGGCACATCGACGCCAGCGTCGCGATGGGTCGCAAGGCACCGCCTCTGGATTTCCGCAATGACGTAGACATCAAATTGCT
GCGCCAATTTACTCCAACTCACGAATGGGTGTTGGCACCTGGTGACATGCTCTACTTGCCGCCACTGGTCCCACATCACG
GGGTCGCCGATGATCCATGTTTGACTTACTCGTTGGGCATGCGTGCTCCATCTTCAGCCGAGTTAATTAGCGACTGGCTG
GACACACTCATCAGTGAGGCGGACGAGGCAGTACGTTACCAAGATGCAGACCTCACACGACCCGAGGACCCCTACGAAAT
CGACGCCGCCGCGATGGATCGTGCGATCGCTGCTCTGAATGCATTGAGGATGCACGAGGATCCGGAGCAACTCGGCAATT
GGTTCGGCCGTTTCATCACCACTTACCGCAGCTCCAACACGATCGTGCCTTACACGACAACACCACAGCGTGAGACGTTA
GAACATGCCCTTGCCAGCGGTAGTGAACTCATACGTCATCCGTGGTCGCGTACCGCTTGGCGCCGTGCCAGCCGCGATGC
CACATTGTTCTGTAGTGGCCTGGAATTCACACTTACATCTCAGGATGCACAACGCTTGGCCGCCGCCGAACGCATCGACA
TCCACGTTTACACAGCACTCTCCGAACGCGGCCGCGCCGCATTATTCGATCTCGTGGGGCAAGGCCACTACCAACTTGAT
GACAACACTCTGGACAACGACGCAAGGAACAAGGAAGCCTCCTCCGCGACAGCCTGTCCCGAAGACTGA

Upstream 100 bases:

>100_bases
ACAAATATCCCCATCAATTGATCATTCAAAAAGCCTCAACGCACCGGACATATCGCACAACACGTACAGCGCACGCTGAC
TCATTTCAAATCCAATACAG

Downstream 100 bases:

>100_bases
TTGATATCCATATGCCCAATGATGGCTTAGCACACTGCTGAAGCACAGCGATGAGGAGTGCCACGATATAGTTAATGTAT
CGTGGCACGATCATAACCCT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MKRSVSLFPFEIQATDQYPLGMPEEYFLHHYWQKRPLLIRNAFPDFHSPVTPEDLAGLACEEGVLCRLVRHNRNTDTWEV
RHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFRFLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRH
WHIDASVAMGRKAPPLDFRNDVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWL
DTLISEADEAVRYQDADLTRPEDPYEIDAAAMDRAIAALNALRMHEDPEQLGNWFGRFITTYRSSNTIVPYTTTPQRETL
EHALASGSELIRHPWSRTAWRRASRDATLFCSGLEFTLTSQDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLD
DNTLDNDARNKEASSATACPED

Sequences:

>Translated_422_residues
MKRSVSLFPFEIQATDQYPLGMPEEYFLHHYWQKRPLLIRNAFPDFHSPVTPEDLAGLACEEGVLCRLVRHNRNTDTWEV
RHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFRFLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRH
WHIDASVAMGRKAPPLDFRNDVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWL
DTLISEADEAVRYQDADLTRPEDPYEIDAAAMDRAIAALNALRMHEDPEQLGNWFGRFITTYRSSNTIVPYTTTPQRETL
EHALASGSELIRHPWSRTAWRRASRDATLFCSGLEFTLTSQDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLD
DNTLDNDARNKEASSATACPED
>Mature_422_residues
MKRSVSLFPFEIQATDQYPLGMPEEYFLHHYWQKRPLLIRNAFPDFHSPVTPEDLAGLACEEGVLCRLVRHNRNTDTWEV
RHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFRFLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRH
WHIDASVAMGRKAPPLDFRNDVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWL
DTLISEADEAVRYQDADLTRPEDPYEIDAAAMDRAIAALNALRMHEDPEQLGNWFGRFITTYRSSNTIVPYTTTPQRETL
EHALASGSELIRHPWSRTAWRRASRDATLFCSGLEFTLTSQDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLD
DNTLDNDARNKEASSATACPED

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=306, Percent_Identity=38.2352941176471, Blast_Score=211, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 48276; Mature: 48276

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSVSLFPFEIQATDQYPLGMPEEYFLHHYWQKRPLLIRNAFPDFHSPVTPEDLAGLAC
CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCC
EEGVLCRLVRHNRNTDTWEVRHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFR
CCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
FLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRHWHIDASVAMGRKAPPLDFRN
HCCCCCHHHHHEEHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEHHHHCCCCCCCCCCCC
DVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWL
CCCHHHHHHCCCCCCEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
DTLISEADEAVRYQDADLTRPEDPYEIDAAAMDRAIAALNALRMHEDPEQLGNWFGRFIT
HHHHHHHHHHHEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
TYRSSNTIVPYTTTPQRETLEHALASGSELIRHPWSRTAWRRASRDATLFCSGLEFTLTS
HCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHCCCCCEEEECCCEEEEEC
QDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLDDNTLDNDARNKEASSATACP
HHHHHHHHHHHEEEEEEEEHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCC
ED
CC
>Mature Secondary Structure
MKRSVSLFPFEIQATDQYPLGMPEEYFLHHYWQKRPLLIRNAFPDFHSPVTPEDLAGLAC
CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCC
EEGVLCRLVRHNRNTDTWEVRHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFR
CCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
FLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRHWHIDASVAMGRKAPPLDFRN
HCCCCCHHHHHEEHHHCCCCCCCCCCCEEEEEEECCCCEEEEEEHHHHCCCCCCCCCCCC
DVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWL
CCCHHHHHHCCCCCCEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
DTLISEADEAVRYQDADLTRPEDPYEIDAAAMDRAIAALNALRMHEDPEQLGNWFGRFIT
HHHHHHHHHHHEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
TYRSSNTIVPYTTTPQRETLEHALASGSELIRHPWSRTAWRRASRDATLFCSGLEFTLTS
HCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHCCCCCEEEECCCEEEEEC
QDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLDDNTLDNDARNKEASSATACP
HHHHHHHHHHHEEEEEEEEHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCC
ED
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]