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The map label for this gene is ychA [C]

Identifier: 182681299

GI number: 182681299

Start: 879362

End: 880207

Strand: Reverse

Name: ychA [C]

Synonym: XfasM23_0745

Alternate gene names: 182681299

Gene position: 880207-879362 (Counterclockwise)

Preceding gene: 182681300

Following gene: 182681297

Centisome position: 34.71

GC content: 53.31

Gene sequence:

>846_bases
ATGGTCGAACAACTGCTACTACCCCTCTGGAACAACCTCGCCACTGTCGACGATGAAACGCTGCCATTGATGTCGACAGC
GTTACTGATCGCTCGTGACGAATATCCAGACCTGGACGCTAACCTCTACGACACGCTGGTACAAAGCTATGTCGAATACC
TCCGCTCAGAAGTGGAAGAGATTTCTCTGTGGCCACTGAAGATGGCCGCAGTAAACCGTTACTTGTTCCAAAAATTAGGA
TATTCAGGAAACCACGACGAGTATTACGATCCACGCAACAGCTACCTCAATCAGGTATTTGAGCGCCGTCTTGGCAATCC
AATCTCCCTGGCAGTCATACAAATAGAGGTAGCACGACGCCTTGGTATTCCTCTAGACGGTGTATCATTCCCTGGGCATT
TCTTGGTCCGGCTGCCTGTCGACGACGGCATACTCGTCATGGATCCATTCAACGGCGGCCGACCATTAGACGCAGAAGAG
TTACGGGAGCGCGCCCGCCCACATCTAGGTGGTGAAGCGCCAGATGATCGCGCATTAGCTCAAATCCTCAATCCCGCACC
ACACCGCACAATCCTCGTTCGTATCCTACGCAACCTACACAGTGTGTACGCTAACACTGACCGCTGGGATCGCGCAGCAC
GCTGCGCTGATCGCATCCTCAAACTGGTGCCGAACCAACCTGAAGCACTCCGCGACCGCGGCTTAGCATATCTGCAACTT
GGACATCGCAGCGGTGCACTGAACGACTTGAAGCGCTACCTGCAGCTCTACCCATCCACACACAACGTCGACATGGTGCG
TGGCCATCTAGTAGATCTAAGCAATGAACGCATCCAAACGCATTGA

Upstream 100 bases:

>100_bases
ACTCTGATTAATCGGTTTTGCCATTGGCCATAGATCGGCAGGCCCCTTTCAGAAAACGTTGGGCTTGAATAAAGAGACAC
TTGGCACCACCCTGTGTTTC

Downstream 100 bases:

>100_bases
AACTGATACGTTAAACGACTATGCGACTATGCGTATGGTTAAGATAAGTAATCCTGACTTTCAACAATAAAAACTCCAAA
CGCACAGAAACGTGCATCAA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MVEQLLLPLWNNLATVDDETLPLMSTALLIARDEYPDLDANLYDTLVQSYVEYLRSEVEEISLWPLKMAAVNRYLFQKLG
YSGNHDEYYDPRNSYLNQVFERRLGNPISLAVIQIEVARRLGIPLDGVSFPGHFLVRLPVDDGILVMDPFNGGRPLDAEE
LRERARPHLGGEAPDDRALAQILNPAPHRTILVRILRNLHSVYANTDRWDRAARCADRILKLVPNQPEALRDRGLAYLQL
GHRSGALNDLKRYLQLYPSTHNVDMVRGHLVDLSNERIQTH

Sequences:

>Translated_281_residues
MVEQLLLPLWNNLATVDDETLPLMSTALLIARDEYPDLDANLYDTLVQSYVEYLRSEVEEISLWPLKMAAVNRYLFQKLG
YSGNHDEYYDPRNSYLNQVFERRLGNPISLAVIQIEVARRLGIPLDGVSFPGHFLVRLPVDDGILVMDPFNGGRPLDAEE
LRERARPHLGGEAPDDRALAQILNPAPHRTILVRILRNLHSVYANTDRWDRAARCADRILKLVPNQPEALRDRGLAYLQL
GHRSGALNDLKRYLQLYPSTHNVDMVRGHLVDLSNERIQTH
>Mature_281_residues
MVEQLLLPLWNNLATVDDETLPLMSTALLIARDEYPDLDANLYDTLVQSYVEYLRSEVEEISLWPLKMAAVNRYLFQKLG
YSGNHDEYYDPRNSYLNQVFERRLGNPISLAVIQIEVARRLGIPLDGVSFPGHFLVRLPVDDGILVMDPFNGGRPLDAEE
LRERARPHLGGEAPDDRALAQILNPAPHRTILVRILRNLHSVYANTDRWDRAARCADRILKLVPNQPEALRDRGLAYLQL
GHRSGALNDLKRYLQLYPSTHNVDMVRGHLVDLSNERIQTH

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI16306500, Length=238, Percent_Identity=29.8319327731092, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI16306502, Length=199, Percent_Identity=30.6532663316583, Blast_Score=81, Evalue=9e-16,
Organism=Escherichia coli, GI1787465, Length=280, Percent_Identity=25, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32146; Mature: 32146

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEQLLLPLWNNLATVDDETLPLMSTALLIARDEYPDLDANLYDTLVQSYVEYLRSEVEE
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ISLWPLKMAAVNRYLFQKLGYSGNHDEYYDPRNSYLNQVFERRLGNPISLAVIQIEVARR
HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
LGIPLDGVSFPGHFLVRLPVDDGILVMDPFNGGRPLDAEELRERARPHLGGEAPDDRALA
HCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHH
QILNPAPHRTILVRILRNLHSVYANTDRWDRAARCADRILKLVPNQPEALRDRGLAYLQL
HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEE
GHRSGALNDLKRYLQLYPSTHNVDMVRGHLVDLSNERIQTH
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVEQLLLPLWNNLATVDDETLPLMSTALLIARDEYPDLDANLYDTLVQSYVEYLRSEVEE
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ISLWPLKMAAVNRYLFQKLGYSGNHDEYYDPRNSYLNQVFERRLGNPISLAVIQIEVARR
HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
LGIPLDGVSFPGHFLVRLPVDDGILVMDPFNGGRPLDAEELRERARPHLGGEAPDDRALA
HCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHH
QILNPAPHRTILVRILRNLHSVYANTDRWDRAARCADRILKLVPNQPEALRDRGLAYLQL
HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEE
GHRSGALNDLKRYLQLYPSTHNVDMVRGHLVDLSNERIQTH
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]