Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182681134
Identifier: 182681134
GI number: 182681134
Start: 685584
End: 686225
Strand: Reverse
Name: 182681134
Synonym: XfasM23_0576
Alternate gene names: NA
Gene position: 686225-685584 (Counterclockwise)
Preceding gene: 182681135
Following gene: 182681132
Centisome position: 27.06
GC content: 53.12
Gene sequence:
>642_bases ATGAAGCTGATCCATCCCCTGGTGTGCCTATCCGTACTCACGCTCGCCAGCTGCTCCTCAACACTACTAGGCGAAAAAAA ACCGACCACGATTTATTCACCACAAATCCACGTCACCACCGATCCCTCCTGGCCTAGAGTGACTTGGCATCTGACAGTAC TCCACCCCAAAGCCCCACGCATGATCGATACCCCACGTATCAACGTACAACCTACCCCAGGTGAGATCCAGGTCTACCAT AACGTCAGTTGGGCGCAACCAACCACCGACATGCTCGAAGACGCACTCATCCGCGTCTTCGAAGATTCAGGAAAAATTGC TGGCGTCACTCGGGCAGGAACCGGCATCCGTACTGATTACAGCCTCAGCTTAGACCTGCGCCGCTTTGAATCCGATTACG CCGGAACACCAATGCCAACCGCAACCATTGAAGTCAACGCCAAATTGATCGGCGCACACAATAAACGCTTGATCGCTTCG CGTACTTTCATCGTCACACAGCCGGCAACAAATACCGATACCTCCACGGTAGCCAACGCATTCGGGCAAGCACTCACTCA ATTGACCAATGAACTGGTTGGCTGGACGCTGACCATGGGTCAGAGCGACGCTATCTCCAACAACAAGCCTTCACAACACT AA
Upstream 100 bases:
>100_bases GCAACCTGATCCGTGACTTGCGTCAAATCAGCAACAAACTCGAAGGCAATCCAAAACGTTACCTACTTGGCCGCGATGCT CCTAAGGAATTCGACCCCAA
Downstream 100 bases:
>100_bases GACATACAAACCAATCCTGTTTGGCAGGACATCACAAACAACAGCATGTTGTTATTCCAACCTCCTCATCACCAGCACAG CAAACACGGATGCCTCAACT
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Protein; Secreted Protein; ABC-Type Transport System; ABC-Type Transport System Auxiliary Component-Like; ABC Transporter Auxiliary Component Protein; ABC-Type Transport System Protein
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MKLIHPLVCLSVLTLASCSSTLLGEKKPTTIYSPQIHVTTDPSWPRVTWHLTVLHPKAPRMIDTPRINVQPTPGEIQVYH NVSWAQPTTDMLEDALIRVFEDSGKIAGVTRAGTGIRTDYSLSLDLRRFESDYAGTPMPTATIEVNAKLIGAHNKRLIAS RTFIVTQPATNTDTSTVANAFGQALTQLTNELVGWTLTMGQSDAISNNKPSQH
Sequences:
>Translated_213_residues MKLIHPLVCLSVLTLASCSSTLLGEKKPTTIYSPQIHVTTDPSWPRVTWHLTVLHPKAPRMIDTPRINVQPTPGEIQVYH NVSWAQPTTDMLEDALIRVFEDSGKIAGVTRAGTGIRTDYSLSLDLRRFESDYAGTPMPTATIEVNAKLIGAHNKRLIAS RTFIVTQPATNTDTSTVANAFGQALTQLTNELVGWTLTMGQSDAISNNKPSQH >Mature_213_residues MKLIHPLVCLSVLTLASCSSTLLGEKKPTTIYSPQIHVTTDPSWPRVTWHLTVLHPKAPRMIDTPRINVQPTPGEIQVYH NVSWAQPTTDMLEDALIRVFEDSGKIAGVTRAGTGIRTDYSLSLDLRRFESDYAGTPMPTATIEVNAKLIGAHNKRLIAS RTFIVTQPATNTDTSTVANAFGQALTQLTNELVGWTLTMGQSDAISNNKPSQH
Specific function: Unknown
COG id: COG3218
COG function: function code R; ABC-type uncharacterized transport system, auxiliary component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23330; Mature: 23330
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLIHPLVCLSVLTLASCSSTLLGEKKPTTIYSPQIHVTTDPSWPRVTWHLTVLHPKAPR CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCEEEEEEEEECCCCCC MIDTPRINVQPTPGEIQVYHNVSWAQPTTDMLEDALIRVFEDSGKIAGVTRAGTGIRTDY EECCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE SLSLDLRRFESDYAGTPMPTATIEVNAKLIGAHNKRLIASRTFIVTQPATNTDTSTVANA EEEEEHHHHCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHHH FGQALTQLTNELVGWTLTMGQSDAISNNKPSQH HHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MKLIHPLVCLSVLTLASCSSTLLGEKKPTTIYSPQIHVTTDPSWPRVTWHLTVLHPKAPR CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCEEEEEEEEECCCCCC MIDTPRINVQPTPGEIQVYHNVSWAQPTTDMLEDALIRVFEDSGKIAGVTRAGTGIRTDY EECCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE SLSLDLRRFESDYAGTPMPTATIEVNAKLIGAHNKRLIASRTFIVTQPATNTDTSTVANA EEEEEHHHHCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHHH FGQALTQLTNELVGWTLTMGQSDAISNNKPSQH HHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA