Click here to switch to the map view.

The map label for this gene is atpD

Identifier: 182680985

GI number: 182680985

Start: 528479

End: 529879

Strand: Reverse

Name: atpD

Synonym: XfasM23_0424

Alternate gene names: 182680985

Gene position: 529879-528479 (Counterclockwise)

Preceding gene: 182680986

Following gene: 182680984

Centisome position: 20.9

GC content: 50.25

Gene sequence:

>1401_bases
ATGAATCAGGGTAAGATCGTTCAGATCATCGGCGCAATTGTCGACGTCGAATTCCCACGAAACAATGTCCCCAAAGTATA
TAACGCGCTGAAGATCGACGGCACAGCCATCATCTTGGAAGTGCAGCAACAGCTTGGCGACGGCATTGTACGCACAATAG
CACTTGGCTCCACAGACGGCTTAAAACGCAACCTCATTGCCACCGACACCGGCCATGCAATCACAGTTCCCGTAGGCACT
GGCACATTAGGTCGCATCATGGATGTACTAGGCAACCCAATCGACGAAGCAGGTCCGATCACTTATACAGATCAATGGGA
AATCCATCGAAACGCTCCTTCCTATGAAGATCAAGCCTCAACCACCGAACTGCTGGAGACCGGAATCAAGGTCATCGACC
TTATGTGTCCATTTGCTAAAGGCGGCAAAGTCGGATTATTCGGTGGTGCCGGTGTCGGCAAAACTGTCAACATGATGGAA
TTGATCAATAACATCGCCAAGGCACATAGTGGGCTGTCCGTATTCGCGGGTGTTGGCGAGCGAACCCGCGAAGGTAACGA
CTTCTATCACGAGATGAAAGACTCCAACGTTCTCGACAAGGTAGCAATGGTGTATGGGCAGATGAACGAACCACCGGGTA
ACCGTCTGCGCGTTGCGCTCACCGGTCTCACCATGGCCGAGTACTTCCGCGATGAGAAAGACAGTAGCGGCAAAGGCAAA
GATGTACTTCTATTCATCGACAATATCTACCGCTACACCTTAGCTGGCACGGAAGTATCCGCCCTACTCGGTCGCATGCC
CTCAGCAGTAGGCTACCAACCAACCCTTGCCGAGGAAATGGGCGTACTACAAGAACGTATCACCTCAACCGCAAATGGCT
CGATCACCTCGATCCAAGCAGTGTACGTACCCGCCGATGATCTGACTGACCCATCACCTGCGACGACCTTTGGACATCTG
GACTCCACAGTGACACTATCCCGCTCGATCGCCGCATTAGGCATTTACCCGGCAGTGGATCCACTGGATTCGAGCAGTCG
CCAGATGGATCCGCTGATCATCGGCGAAGAACACTACAATACCACCCAACGTGTCCAACAAACTCTGCAAAAATATAAAG
ATCTGAAGGACATCATTGCAATCTTAGGCATGGATGAACTTTCCGAAGACGACAAACTATCCGTGTCACGTGCACGCAAA
ATTGAACGATTTTTCAGTCAACCATTCCATGTCGCAGAAGTATTCACCGGTGCCCCAGGTAAATACGTCCCATTAAAAGA
CACAATCCGTGGTTTCAAAGCAATCGTAGACGGCGAATATGACCATCTTCCCGAACAAGCCTTCTATATGGTCGGTAACA
TTGAAGAAGTCATCGAAAAAGCCAACAAAATGACAGCATGA

Upstream 100 bases:

>100_bases
GGTGCCGCCGCAGTCTGATCTGAATACCATTTTCCCAAGATCCCTTGCCATATCCGGCCTGGACTGACAAAACATTTAAA
ATGCCACGAGGATTCCATCC

Downstream 100 bases:

>100_bases
TTGACTTCCTCGGATAAGAATCAGCTCAATCCTCTACTGCATTGGAACAGGATTCACCCTAGAAAACACATGGCATCCAT
GAGCACTATCCGTTGTGACA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MNQGKIVQIIGAIVDVEFPRNNVPKVYNALKIDGTAIILEVQQQLGDGIVRTIALGSTDGLKRNLIATDTGHAITVPVGT
GTLGRIMDVLGNPIDEAGPITYTDQWEIHRNAPSYEDQASTTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDSSGKGK
DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQAVYVPADDLTDPSPATTFGHL
DSTVTLSRSIAALGIYPAVDPLDSSSRQMDPLIIGEEHYNTTQRVQQTLQKYKDLKDIIAILGMDELSEDDKLSVSRARK
IERFFSQPFHVAEVFTGAPGKYVPLKDTIRGFKAIVDGEYDHLPEQAFYMVGNIEEVIEKANKMTA

Sequences:

>Translated_466_residues
MNQGKIVQIIGAIVDVEFPRNNVPKVYNALKIDGTAIILEVQQQLGDGIVRTIALGSTDGLKRNLIATDTGHAITVPVGT
GTLGRIMDVLGNPIDEAGPITYTDQWEIHRNAPSYEDQASTTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDSSGKGK
DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQAVYVPADDLTDPSPATTFGHL
DSTVTLSRSIAALGIYPAVDPLDSSSRQMDPLIIGEEHYNTTQRVQQTLQKYKDLKDIIAILGMDELSEDDKLSVSRARK
IERFFSQPFHVAEVFTGAPGKYVPLKDTIRGFKAIVDGEYDHLPEQAFYMVGNIEEVIEKANKMTA
>Mature_466_residues
MNQGKIVQIIGAIVDVEFPRNNVPKVYNALKIDGTAIILEVQQQLGDGIVRTIALGSTDGLKRNLIATDTGHAITVPVGT
GTLGRIMDVLGNPIDEAGPITYTDQWEIHRNAPSYEDQASTTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDSSGKGK
DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQAVYVPADDLTDPSPATTFGHL
DSTVTLSRSIAALGIYPAVDPLDSSSRQMDPLIIGEEHYNTTQRVQQTLQKYKDLKDIIAILGMDELSEDDKLSVSRARK
IERFFSQPFHVAEVFTGAPGKYVPLKDTIRGFKAIVDGEYDHLPEQAFYMVGNIEEVIEKANKMTA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=66.5245202558635, Blast_Score=632, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=333, Percent_Identity=27.3273273273273, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI19913428, Length=425, Percent_Identity=25.8823529411765, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI19913426, Length=403, Percent_Identity=24.8138957816377, Blast_Score=106, Evalue=6e-23,
Organism=Homo sapiens, GI50345984, Length=309, Percent_Identity=25.5663430420712, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4757810, Length=309, Percent_Identity=25.5663430420712, Blast_Score=100, Evalue=3e-21,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=77.0386266094421, Blast_Score=745, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=323, Percent_Identity=30.030959752322, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1790172, Length=314, Percent_Identity=25.1592356687898, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25144756, Length=469, Percent_Identity=64.3923240938166, Blast_Score=613, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=330, Percent_Identity=28.4848484848485, Blast_Score=121, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17510931, Length=351, Percent_Identity=26.2108262108262, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17570191, Length=358, Percent_Identity=26.2569832402235, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=327, Percent_Identity=25.6880733944954, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=327, Percent_Identity=25.6880733944954, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=315, Percent_Identity=23.8095238095238, Blast_Score=86, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=65.1515151515152, Blast_Score=621, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=407, Percent_Identity=26.2899262899263, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6319370, Length=330, Percent_Identity=26.0606060606061, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=238, Percent_Identity=25.2100840336134, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24638766, Length=469, Percent_Identity=66.3113006396588, Blast_Score=628, Evalue=1e-180,
Organism=Drosophila melanogaster, GI28574560, Length=474, Percent_Identity=62.0253164556962, Blast_Score=589, Evalue=1e-168,
Organism=Drosophila melanogaster, GI281361666, Length=401, Percent_Identity=26.4339152119701, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24646341, Length=401, Percent_Identity=26.4339152119701, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI17136796, Length=401, Percent_Identity=26.4339152119701, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI20129479, Length=337, Percent_Identity=27.299703264095, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24583988, Length=389, Percent_Identity=25.4498714652956, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24583986, Length=389, Percent_Identity=25.4498714652956, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24583984, Length=389, Percent_Identity=25.4498714652956, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24583992, Length=329, Percent_Identity=27.0516717325228, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24658560, Length=309, Percent_Identity=25.8899676375405, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=50.5494505494505, Blast_Score=87, Evalue=3e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_XYLF2 (B2I877)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001829145.1
- ProteinModelPortal:   B2I877
- SMR:   B2I877
- GeneID:   6202969
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_0424
- HOGENOM:   HBG565875
- OMA:   HYKTARA
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 50724; Mature: 50724

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQGKIVQIIGAIVDVEFPRNNVPKVYNALKIDGTAIILEVQQQLGDGIVRTIALGSTDG
CCCCCEEHEEHHHHEECCCCCCCCHHHHHEEECCEEEEEEEHHHHCCCCEEHEEECCCCC
LKRNLIATDTGHAITVPVGTGTLGRIMDVLGNPIDEAGPITYTDQWEIHRNAPSYEDQAS
CCCCEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCEEEECCCCCCCCHHH
TTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDSSGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQA
EEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
VYVPADDLTDPSPATTFGHLDSTVTLSRSIAALGIYPAVDPLDSSSRQMDPLIIGEEHYN
EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCC
TTQRVQQTLQKYKDLKDIIAILGMDELSEDDKLSVSRARKIERFFSQPFHVAEVFTGAPG
HHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCC
KYVPLKDTIRGFKAIVDGEYDHLPEQAFYMVGNIEEVIEKANKMTA
CCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNQGKIVQIIGAIVDVEFPRNNVPKVYNALKIDGTAIILEVQQQLGDGIVRTIALGSTDG
CCCCCEEHEEHHHHEECCCCCCCCHHHHHEEECCEEEEEEEHHHHCCCCEEHEEECCCCC
LKRNLIATDTGHAITVPVGTGTLGRIMDVLGNPIDEAGPITYTDQWEIHRNAPSYEDQAS
CCCCEEEECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCEEEECCCCCCCCHHH
TTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDSSGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQA
EEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
VYVPADDLTDPSPATTFGHLDSTVTLSRSIAALGIYPAVDPLDSSSRQMDPLIIGEEHYN
EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCC
TTQRVQQTLQKYKDLKDIIAILGMDELSEDDKLSVSRARKIERFFSQPFHVAEVFTGAPG
HHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCC
KYVPLKDTIRGFKAIVDGEYDHLPEQAFYMVGNIEEVIEKANKMTA
CCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA