Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is fadB [H]
Identifier: 182680963
GI number: 182680963
Start: 499171
End: 500043
Strand: Reverse
Name: fadB [H]
Synonym: XfasM23_0401
Alternate gene names: 182680963
Gene position: 500043-499171 (Counterclockwise)
Preceding gene: 182680968
Following gene: 182680951
Centisome position: 19.72
GC content: 48.22
Gene sequence:
>873_bases ATGTCCGCTGTACATCCCATTCCTCACCCCATATGCGAATCATCCATTCGCATCATCGAAGAAACCCATCGCAATGTGTA CTGGATCTATATGCATGCTCATCTCGCCAGAACCACGGGAGCCGCCTATTTTTCCTTAAAACTGATTGATGACATCATGA ATTATCAATCCGTACTTAGACAACGTTTAAAGGAACAAACGGTTCAATTACCATTCGTTGTTCTCGCCTCGGACAGCAAT GTATTTAATTTAGGCGGGGATCTGCAGCTTTTTTGTGACCTGATACGCCGTAAGGAGCGTGAAGCATTATTGGACTATGC CTGCCGCTGTGTGCGTGGAGCCTATGCGTTCCATGCTGGGCTCAATGCTAATGTGCATAGCATCGCGCTGCTCCAAGGCA ATGCGCTTGGAGGAGGCTTCGAAGCTGCGCTCTGTTGCCATACCATCGTAGCTGAAGAAGGTGTGATGATGGGTTTTCCT GAAGTATTGTTCGATCTTTTCCCAGGCATGGGAGCCTACTCTTTCATGCGTCAACGCATCTCTCCTAAACTGGCCGAACG CCTCATCCTTGAGGGCAATCTCTACAGTTCCGAAGAATTATTGGCGATTGGGCTGATCGACAAAGTAGTACCGCGCGGCA AGGGGATAGAAGCAGTCGAGCAAATCATCCGTGACAGCAAACGCCGTCAATATACTTGGGCAGCCATGCAGGAGGTGAAA AAAATCGCACACGAAGTCTCTTTAGAAGAAATGATACGCATCACCGAACTCTGGGTAGACAGTGCATTGAAACTAAGTAA CAAATCACTCCGAACTATGGAGCGCCTGATCCGCGCCCAGCAGACTCACAAAAACACAGCACTAAAAAACTGA
Upstream 100 bases:
>100_bases GTTTTTTGCGCACATAGAATCAAGTGTCGGCCAACACCGTCACTTCCCGCTTCTACGTCCGCAACATGGCCGACCGGACT ACCATTACGGAGAACAATAA
Downstream 100 bases:
>100_bases GCACTTAAAGCTGTGCTGATGATCATCGTAAAACCCCACTGCGCCGGCGTTCCTGTCGGCGCGCTTCAAGCGCATCACGA CCACACAGCAGTGCTTCATC
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSAVHPIPHPICESSIRIIEETHRNVYWIYMHAHLARTTGAAYFSLKLIDDIMNYQSVLRQRLKEQTVQLPFVVLASDSN VFNLGGDLQLFCDLIRRKEREALLDYACRCVRGAYAFHAGLNANVHSIALLQGNALGGGFEAALCCHTIVAEEGVMMGFP EVLFDLFPGMGAYSFMRQRISPKLAERLILEGNLYSSEELLAIGLIDKVVPRGKGIEAVEQIIRDSKRRQYTWAAMQEVK KIAHEVSLEEMIRITELWVDSALKLSNKSLRTMERLIRAQQTHKNTALKN
Sequences:
>Translated_290_residues MSAVHPIPHPICESSIRIIEETHRNVYWIYMHAHLARTTGAAYFSLKLIDDIMNYQSVLRQRLKEQTVQLPFVVLASDSN VFNLGGDLQLFCDLIRRKEREALLDYACRCVRGAYAFHAGLNANVHSIALLQGNALGGGFEAALCCHTIVAEEGVMMGFP EVLFDLFPGMGAYSFMRQRISPKLAERLILEGNLYSSEELLAIGLIDKVVPRGKGIEAVEQIIRDSKRRQYTWAAMQEVK KIAHEVSLEEMIRITELWVDSALKLSNKSLRTMERLIRAQQTHKNTALKN >Mature_289_residues SAVHPIPHPICESSIRIIEETHRNVYWIYMHAHLARTTGAAYFSLKLIDDIMNYQSVLRQRLKEQTVQLPFVVLASDSNV FNLGGDLQLFCDLIRRKEREALLDYACRCVRGAYAFHAGLNANVHSIALLQGNALGGGFEAALCCHTIVAEEGVMMGFPE VLFDLFPGMGAYSFMRQRISPKLAERLILEGNLYSSEELLAIGLIDKVVPRGKGIEAVEQIIRDSKRRQYTWAAMQEVKK IAHEVSLEEMIRITELWVDSALKLSNKSLRTMERLIRAQQTHKNTALKN
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788682, Length=169, Percent_Identity=27.2189349112426, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787659, Length=125, Percent_Identity=30.4, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790281, Length=178, Percent_Identity=27.5280898876405, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012799 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =5.3.3.8; =1.1.1.35 [H]
Molecular weight: Translated: 32829; Mature: 32697
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVHPIPHPICESSIRIIEETHRNVYWIYMHAHLARTTGAAYFSLKLIDDIMNYQSVLR CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHH QRLKEQTVQLPFVVLASDSNVFNLGGDLQLFCDLIRRKEREALLDYACRCVRGAYAFHAG HHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LNANVHSIALLQGNALGGGFEAALCCHTIVAEEGVMMGFPEVLFDLFPGMGAYSFMRQRI CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHH SPKLAERLILEGNLYSSEELLAIGLIDKVVPRGKGIEAVEQIIRDSKRRQYTWAAMQEVK CHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KIAHEVSLEEMIRITELWVDSALKLSNKSLRTMERLIRAQQTHKNTALKN HHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SAVHPIPHPICESSIRIIEETHRNVYWIYMHAHLARTTGAAYFSLKLIDDIMNYQSVLR CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHH QRLKEQTVQLPFVVLASDSNVFNLGGDLQLFCDLIRRKEREALLDYACRCVRGAYAFHAG HHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LNANVHSIALLQGNALGGGFEAALCCHTIVAEEGVMMGFPEVLFDLFPGMGAYSFMRQRI CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHH SPKLAERLILEGNLYSSEELLAIGLIDKVVPRGKGIEAVEQIIRDSKRRQYTWAAMQEVK CHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KIAHEVSLEEMIRITELWVDSALKLSNKSLRTMERLIRAQQTHKNTALKN HHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA