Click here to switch to the map view.

The map label for this gene is ymdC [C]

Identifier: 182680942

GI number: 182680942

Start: 469956

End: 471914

Strand: Direct

Name: ymdC [C]

Synonym: XfasM23_0380

Alternate gene names: 182680942

Gene position: 469956-471914 (Clockwise)

Preceding gene: 182680941

Following gene: 182680944

Centisome position: 18.53

GC content: 51.0

Gene sequence:

>1959_bases
TTGAATATATTCATACGTTTGTTGCTGCTAGCAGCTGTTTTGTTGGGCAGTGGTTGCGCTAGCCTGTCGCATGCCCAGTT
GGATTATGCTGCGTCGGTCGCCGTGGCTGCGCGCCCGGCTACGCTGGATTGTGACAGGCCCAATCGTTGTGCGTTGGATT
CGCCGTTGTACGCGCTTGGGAGCCGAGCGCTGAGTGAATCTACGCCTGTGACACCACTTCACTATGTCACCATCCTCGAT
AAAGGCGAGAGCGCGTTGGTCGCACGGATCAATTTGATCCGCAGTGCTACCCGCAGTATCGACATGCAGACTTACATTTT
TGACAAGGACGATAGTGCCCGGTTGATCATGGATGAGCTATTGACTGCTGCCAGACGTGGTGTTCGAGTTCGTTTACTGA
TTGACCAGCTTTCGGCGATTTCTGATCTGAATATTCTGGGTGCCTTGGCTGGTGCACACGTTAATTTCCAACTACGTATC
TACAACCCGATTTTTGGCAAAGCCAAGCTGAACTATGGTGACTATGTTGCCAGCGTGCTGTGTTGTTTTCGTCGATTTAA
TCAGCGCATGCACAATAAATTGTTGGTCATTGATGAAATGATCGGCGTGGTCGGCGGGCGTAATTACCAAGATGACTATT
ATGATTGGGATCTTGAATATAATTTTCGTGACCGTGATGTGCTTGTCGCCGGACCGGCGGTGCTGCAAATGGCAGTTAAC
TTTGATGCGTTTTGGGCGGCTGAGCGCAGCGTACCGGTAGAGCGCCTCAGGGATGTTGGACGTATGGTGCTGCAGGATGG
GGTGCCGATGCTGCCATCAGCTGTCTTCAATCTGTTGGAACGGGTCCAGCGTGTTACTGCTGAGGCCAACGATCCGGACT
ATGTCAAGCGCACTTTTGTCGATGCGGCCTTGGCTGTGAACAAAGTGCAATATGTTGCTGACCTGCCGCAAAAGCATCGC
TATGAGCACAACGCAAATCCGGTTTCCATCGGGCCACGGTTGGATAGTTTGATTTCTAATGCGCGTCATGAGGTGATCTT
GCAGACCCCATATCTGGTGTTGTCCAAACCAGCGCTGAACATCTTCCGTCGCCTCAATCGGACTCAGGACAAACCGCGCG
TGGTTGTGGTGACCAACAGTTTGGCTGCTACCGATAATCCCATCGTCTATGCCTTATTTTACAAATACAAGCGGCGTAAC
ATGCGTGACCTGGGGTTCGACATTTACGAGTACAAGCCGTTTCCGGAAAATCCGCCAATCGACCTGACGGGCGTTGTTCC
GATTGAAGGATGGAACAATGACTCTCTTCAGAGGCGACAGGACCTTTTGGCTGCTGCCAAAGTCTCCGATGATTCAGACA
ATGCTCGTCAGTTACCTCAGCTTGAAAATAAAGGTCAAGTGGATAGGCGTGTTTTACGTACTGAAACGCGTCCGCCCTTT
TGGCGCATTCACACTGTCAATAAACCATTACCTGTGACCCGTCCGGGCGCACGCATGGGCTTGCATGCAAAATCATTGGT
GGTTGATCGTAAGGTTGGAGTGATTGGTACCCACAACTTCGATCCGCGCAGTGAGAGTTACAATACTGAAGCTGTTGTGG
TGATTGAGGATCCAGCGTTTGCCGGTCTGTTGGCTTCCAGTATTGAGGGTGACATTGCTCCAGGTAATGCGTGGGTCGTG
GCACCGCGGAAGAAGTTACCTGGGCTCTATAAGCTCAATTATTCGGTAGGTAAACTGTCTGAGGCATTGCCTGTGCTGGA
CCTGTGGCCTTGGCGCTATGCAACCAACTATGAATTCAAACCCGGGTTGGATTGTCCAATACCATTGCCACGTCGGGATC
CGAATTTCATGCAATGTTATGAACCTGTCGGTGACTTTCCTGAAGTCAATGTTGGTCCAAAGTGGTTGTTGGTGCGGATG
CTGATTGCATTCGGTGCTGGGCTGGTGCCTATCTTGTAA

Upstream 100 bases:

>100_bases
TGTTGCGTGAGCGTTATGGCATTGACGGTTGGCGGTTAATACTTGGCAATCGGGTGACCTTCCGTTGGCATGGCCGTTTG
ATCGAGGGGCCGCCAAGTCA

Downstream 100 bases:

>100_bases
GGTGTTGGGTGATTTGCTCTACGATTATTGCCACAAATCGCAAGCGCAACCACCGTGTAGTAGTGTTTCGCATTATTTAA
TAACGGATTGAAGGTCTCAT

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MNIFIRLLLLAAVLLGSGCASLSHAQLDYAASVAVAARPATLDCDRPNRCALDSPLYALGSRALSESTPVTPLHYVTILD
KGESALVARINLIRSATRSIDMQTYIFDKDDSARLIMDELLTAARRGVRVRLLIDQLSAISDLNILGALAGAHVNFQLRI
YNPIFGKAKLNYGDYVASVLCCFRRFNQRMHNKLLVIDEMIGVVGGRNYQDDYYDWDLEYNFRDRDVLVAGPAVLQMAVN
FDAFWAAERSVPVERLRDVGRMVLQDGVPMLPSAVFNLLERVQRVTAEANDPDYVKRTFVDAALAVNKVQYVADLPQKHR
YEHNANPVSIGPRLDSLISNARHEVILQTPYLVLSKPALNIFRRLNRTQDKPRVVVVTNSLAATDNPIVYALFYKYKRRN
MRDLGFDIYEYKPFPENPPIDLTGVVPIEGWNNDSLQRRQDLLAAAKVSDDSDNARQLPQLENKGQVDRRVLRTETRPPF
WRIHTVNKPLPVTRPGARMGLHAKSLVVDRKVGVIGTHNFDPRSESYNTEAVVVIEDPAFAGLLASSIEGDIAPGNAWVV
APRKKLPGLYKLNYSVGKLSEALPVLDLWPWRYATNYEFKPGLDCPIPLPRRDPNFMQCYEPVGDFPEVNVGPKWLLVRM
LIAFGAGLVPIL

Sequences:

>Translated_652_residues
MNIFIRLLLLAAVLLGSGCASLSHAQLDYAASVAVAARPATLDCDRPNRCALDSPLYALGSRALSESTPVTPLHYVTILD
KGESALVARINLIRSATRSIDMQTYIFDKDDSARLIMDELLTAARRGVRVRLLIDQLSAISDLNILGALAGAHVNFQLRI
YNPIFGKAKLNYGDYVASVLCCFRRFNQRMHNKLLVIDEMIGVVGGRNYQDDYYDWDLEYNFRDRDVLVAGPAVLQMAVN
FDAFWAAERSVPVERLRDVGRMVLQDGVPMLPSAVFNLLERVQRVTAEANDPDYVKRTFVDAALAVNKVQYVADLPQKHR
YEHNANPVSIGPRLDSLISNARHEVILQTPYLVLSKPALNIFRRLNRTQDKPRVVVVTNSLAATDNPIVYALFYKYKRRN
MRDLGFDIYEYKPFPENPPIDLTGVVPIEGWNNDSLQRRQDLLAAAKVSDDSDNARQLPQLENKGQVDRRVLRTETRPPF
WRIHTVNKPLPVTRPGARMGLHAKSLVVDRKVGVIGTHNFDPRSESYNTEAVVVIEDPAFAGLLASSIEGDIAPGNAWVV
APRKKLPGLYKLNYSVGKLSEALPVLDLWPWRYATNYEFKPGLDCPIPLPRRDPNFMQCYEPVGDFPEVNVGPKWLLVRM
LIAFGAGLVPIL
>Mature_652_residues
MNIFIRLLLLAAVLLGSGCASLSHAQLDYAASVAVAARPATLDCDRPNRCALDSPLYALGSRALSESTPVTPLHYVTILD
KGESALVARINLIRSATRSIDMQTYIFDKDDSARLIMDELLTAARRGVRVRLLIDQLSAISDLNILGALAGAHVNFQLRI
YNPIFGKAKLNYGDYVASVLCCFRRFNQRMHNKLLVIDEMIGVVGGRNYQDDYYDWDLEYNFRDRDVLVAGPAVLQMAVN
FDAFWAAERSVPVERLRDVGRMVLQDGVPMLPSAVFNLLERVQRVTAEANDPDYVKRTFVDAALAVNKVQYVADLPQKHR
YEHNANPVSIGPRLDSLISNARHEVILQTPYLVLSKPALNIFRRLNRTQDKPRVVVVTNSLAATDNPIVYALFYKYKRRN
MRDLGFDIYEYKPFPENPPIDLTGVVPIEGWNNDSLQRRQDLLAAAKVSDDSDNARQLPQLENKGQVDRRVLRTETRPPF
WRIHTVNKPLPVTRPGARMGLHAKSLVVDRKVGVIGTHNFDPRSESYNTEAVVVIEDPAFAGLLASSIEGDIAPGNAWVV
APRKKLPGLYKLNYSVGKLSEALPVLDLWPWRYATNYEFKPGLDCPIPLPRRDPNFMQCYEPVGDFPEVNVGPKWLLVRM
LIAFGAGLVPIL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=342, Percent_Identity=30.9941520467836, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73140; Mature: 73140

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFIRLLLLAAVLLGSGCASLSHAQLDYAASVAVAARPATLDCDRPNRCALDSPLYALG
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCEECCCCCCCCCCCCCHHHHH
SRALSESTPVTPLHYVTILDKGESALVARINLIRSATRSIDMQTYIFDKDDSARLIMDEL
HHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
LTAARRGVRVRLLIDQLSAISDLNILGALAGAHVNFQLRIYNPIFGKAKLNYGDYVASVL
HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCEECCHHHHHHHHH
CCFRRFNQRMHNKLLVIDEMIGVVGGRNYQDDYYDWDLEYNFRDRDVLVAGPAVLQMAVN
HHHHHHHHHHHCCEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEECHHHHHHHHC
FDAFWAAERSVPVERLRDVGRMVLQDGVPMLPSAVFNLLERVQRVTAEANDPDYVKRTFV
CHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DAALAVNKVQYVADLPQKHRYEHNANPVSIGPRLDSLISNARHEVILQTPYLVLSKPALN
HHHHHHHHHHHHHHCCHHHCCCCCCCCEEECCHHHHHHHCCCCEEEEECCHHEECCHHHH
IFRRLNRTQDKPRVVVVTNSLAATDNPIVYALFYKYKRRNMRDLGFDIYEYKPFPENPPI
HHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHCCHHHCCCCCEECCCCCCCCCC
DLTGVVPIEGWNNDSLQRRQDLLAAAKVSDDSDNARQLPQLENKGQVDRRVLRTETRPPF
CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCE
WRIHTVNKPLPVTRPGARMGLHAKSLVVDRKVGVIGTHNFDPRSESYNTEAVVVIEDPAF
EEEEECCCCCCCCCCCCHHCCCHHHEEEECCCCEEECCCCCCCCCCCCCCEEEEECCCCH
AGLLASSIEGDIAPGNAWVVAPRKKLPGLYKLNYSVGKLSEALPVLDLWPWRYATNYEFK
HHHHHHHCCCCCCCCCEEEEECHHHCCCEEEECCCHHHHHHCCCCCEECCCCEECCCCCC
PGLDCPIPLPRRDPNFMQCYEPVGDFPEVNVGPKWLLVRMLIAFGAGLVPIL
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNIFIRLLLLAAVLLGSGCASLSHAQLDYAASVAVAARPATLDCDRPNRCALDSPLYALG
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCEECCCCCCCCCCCCCHHHHH
SRALSESTPVTPLHYVTILDKGESALVARINLIRSATRSIDMQTYIFDKDDSARLIMDEL
HHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
LTAARRGVRVRLLIDQLSAISDLNILGALAGAHVNFQLRIYNPIFGKAKLNYGDYVASVL
HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCEECCHHHHHHHHH
CCFRRFNQRMHNKLLVIDEMIGVVGGRNYQDDYYDWDLEYNFRDRDVLVAGPAVLQMAVN
HHHHHHHHHHHCCEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEECHHHHHHHHC
FDAFWAAERSVPVERLRDVGRMVLQDGVPMLPSAVFNLLERVQRVTAEANDPDYVKRTFV
CHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DAALAVNKVQYVADLPQKHRYEHNANPVSIGPRLDSLISNARHEVILQTPYLVLSKPALN
HHHHHHHHHHHHHHCCHHHCCCCCCCCEEECCHHHHHHHCCCCEEEEECCHHEECCHHHH
IFRRLNRTQDKPRVVVVTNSLAATDNPIVYALFYKYKRRNMRDLGFDIYEYKPFPENPPI
HHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHCCHHHCCCCCEECCCCCCCCCC
DLTGVVPIEGWNNDSLQRRQDLLAAAKVSDDSDNARQLPQLENKGQVDRRVLRTETRPPF
CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCE
WRIHTVNKPLPVTRPGARMGLHAKSLVVDRKVGVIGTHNFDPRSESYNTEAVVVIEDPAF
EEEEECCCCCCCCCCCCHHCCCHHHEEEECCCCEEECCCCCCCCCCCCCCEEEEECCCCH
AGLLASSIEGDIAPGNAWVVAPRKKLPGLYKLNYSVGKLSEALPVLDLWPWRYATNYEFK
HHHHHHHCCCCCCCCCEEEEECHHHCCCEEEECCCHHHHHHCCCCCEECCCCEECCCCCC
PGLDCPIPLPRRDPNFMQCYEPVGDFPEVNVGPKWLLVRMLIAFGAGLVPIL
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]