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The map label for this gene is ygiT [H]

Identifier: 182680925

GI number: 182680925

Start: 458407

End: 458808

Strand: Direct

Name: ygiT [H]

Synonym: XfasM23_0363

Alternate gene names: 182680925

Gene position: 458407-458808 (Clockwise)

Preceding gene: 182680924

Following gene: 182680933

Centisome position: 18.08

GC content: 52.99

Gene sequence:

>402_bases
ATGAGATGTCCATGCTGCGGCGCGGCAGAACTGATCCACGACACGCGCGACATGCTTTACACCTACAAGAGCGAAACTAC
TAGTATCCCAACGGTGACCGGCGACTTCTGCCCGGCTTGTGGCGAAGTCGTCTTGGACCGTGAACATGGTGATCGTTACA
GCGAATTGGTCGGCTTGTTCCAACGTCAGGTGAATTCGGCCTACGTCGATCCTGGTTACATTACCAAGGTACGCCGGAAG
CTTGATCTCGACCAGCGGCAAGCTGCCGAACTGTTCGGTGGTGGTGTTAATGCTTTCTCACGTTACGAGAACGGTAAAAC
CAAGCCGCCGCTGTCTTTGGTTAAGTTATTCAAGCTTCTGGATCGCCACCCCGATTTGCTCAACGAAGTGAAGAGTTCCT
AA

Upstream 100 bases:

>100_bases
AGGATGTGTACCACGCCAAGACGGCAAGCGGTGATGAGGTGTACCTGAAGTTAACTGTCATTGATGACGTGTTGATTGTT
TCCTTCAAGGAGTTATGACC

Downstream 100 bases:

>100_bases
CCGTTAAAAGGTACTGGCTTGAACAGTTAATGGTCATGATCGCCTCACGTTCGCTTTTGTTTGAACGCCTACCCCTGTGC
AGGGGTGGTCGGTGCATTGG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHGDRYSELVGLFQRQVNSAYVDPGYITKVRRK
LDLDQRQAAELFGGGVNAFSRYENGKTKPPLSLVKLFKLLDRHPDLLNEVKSS

Sequences:

>Translated_133_residues
MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHGDRYSELVGLFQRQVNSAYVDPGYITKVRRK
LDLDQRQAAELFGGGVNAFSRYENGKTKPPLSLVKLFKLLDRHPDLLNEVKSS
>Mature_133_residues
MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHGDRYSELVGLFQRQVNSAYVDPGYITKVRRK
LDLDQRQAAELFGGGVNAFSRYENGKTKPPLSLVKLFKLLDRHPDLLNEVKSS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789398, Length=131, Percent_Identity=42.7480916030534, Blast_Score=132, Evalue=6e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR022452
- InterPro:   IPR022453 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14944; Mature: 14944

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHGDRYSELVGLF
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
QRQVNSAYVDPGYITKVRRKLDLDQRQAAELFGGGVNAFSRYENGKTKPPLSLVKLFKLL
HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHH
DRHPDLLNEVKSS
HCCHHHHHHHHCC
>Mature Secondary Structure
MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHGDRYSELVGLF
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
QRQVNSAYVDPGYITKVRRKLDLDQRQAAELFGGGVNAFSRYENGKTKPPLSLVKLFKLL
HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHH
DRHPDLLNEVKSS
HCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]