Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182680824
Identifier: 182680824
GI number: 182680824
Start: 338829
End: 339869
Strand: Direct
Name: 182680824
Synonym: XfasM23_0259
Alternate gene names: NA
Gene position: 338829-339869 (Clockwise)
Preceding gene: 182680823
Following gene: 182680825
Centisome position: 13.36
GC content: 57.06
Gene sequence:
>1041_bases ATGATCCGTGTTGCCGTTTTGCTGCTGTTATTGACCTGCCATTTTATGGTGTGGGCACATCCTGGTGAGATACGGCATTT TTCAACCAAAGGCCCGGTGACCGCACAACTGCGCATTCAAGGGGCTAACGATGTGGAGAGGTTTGCCGTGGTCATTGCTG ATTATCAGCGCCTGCATCCTGGAAGCGAAGTGATCTATGAGGAGCAGATTGCATCGCAGATCTATCACCGTTATCTGCAT CCGGCATCAAGTCAGCCACCACCGGATCTGTTGATCAGCGCGAGTATGGATTTACAGATCAAGCTGGCAAATGACGGCCA CGCATTGGCCTATCGTTCGTCGCGAACCAGGGCACTGCCGACCTGGGCGCAGTGGCGTTATGAGGTGTTCGGGATCGGTT ATGAACCAGCGGTCATCGTCTACAACACCCGGCGGCTGCCGTCGCCGCAGGTGCCACGCACCCGCCACCAATTGCTTGCG TTGCTGCGCGCCCCTGAGGCGCCATTGCGTGGTCAGATTGGAACCTATGATGTGGAGCGCAGTGCGGTGGGTTATCTATT GAGCACTCAGGATGCGCAGCTCGGCAGCATTGCTGGCGCGTTGTGGGAGGCGATGGGGGAGGAACGAGTGCAGTTGGAAG CAGGGACAGGGGCGTTGTTGGAGCGTGTCGCCAGCGGCGAATTGCTATTGGCCTATAACGTCCTTGGTTCGTATGCGCAG GCGCGCGTGGATGCTGGTGTGCCTCTTGGTATCGTGCAGCCTGAGGATTACACCCTGCTGGCATTGCGTACCGCTGTGAT CCCGCGTGGTGGCGTGCATGTGTCTGAGGCGCAGCGTTTCCTTGATTATTTGTTGTCAGAGCGCGGCCAACGGGTCCTGT CGCATGAAGTACGGCTGATGCCGGTGTTACCGGGGAGTGATCGTATTGTGTCCATGTTCCGTCCCATTGCACTTGGACCA GGGCTGCTGGTGTATCTGGATACGTTGAAGCGTCGTCAATTTTTGTATACGTGGCGCAGTAGCATGTTGCCGCCCCGTTG A
Upstream 100 bases:
>100_bases TGAAACGGATCATTGATAACCATCGTGGCCGTATCGATCTATCTAATCGCATTGGTGGCGGCCTGATGATCACCCTAGGT TTTCCTCGGTGACCCGCATC
Downstream 100 bases:
>100_bases GTGCTCAGTGTATGAGGGTACGAGGTGGCGTGTGTATTGCGCTTTAGTCAGGTGCTGGCCGCTCATGGCATTGATCGTGG GACGCATACGTCAGTGGGAT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MIRVAVLLLLLTCHFMVWAHPGEIRHFSTKGPVTAQLRIQGANDVERFAVVIADYQRLHPGSEVIYEEQIASQIYHRYLH PASSQPPPDLLISASMDLQIKLANDGHALAYRSSRTRALPTWAQWRYEVFGIGYEPAVIVYNTRRLPSPQVPRTRHQLLA LLRAPEAPLRGQIGTYDVERSAVGYLLSTQDAQLGSIAGALWEAMGEERVQLEAGTGALLERVASGELLLAYNVLGSYAQ ARVDAGVPLGIVQPEDYTLLALRTAVIPRGGVHVSEAQRFLDYLLSERGQRVLSHEVRLMPVLPGSDRIVSMFRPIALGP GLLVYLDTLKRRQFLYTWRSSMLPPR
Sequences:
>Translated_346_residues MIRVAVLLLLLTCHFMVWAHPGEIRHFSTKGPVTAQLRIQGANDVERFAVVIADYQRLHPGSEVIYEEQIASQIYHRYLH PASSQPPPDLLISASMDLQIKLANDGHALAYRSSRTRALPTWAQWRYEVFGIGYEPAVIVYNTRRLPSPQVPRTRHQLLA LLRAPEAPLRGQIGTYDVERSAVGYLLSTQDAQLGSIAGALWEAMGEERVQLEAGTGALLERVASGELLLAYNVLGSYAQ ARVDAGVPLGIVQPEDYTLLALRTAVIPRGGVHVSEAQRFLDYLLSERGQRVLSHEVRLMPVLPGSDRIVSMFRPIALGP GLLVYLDTLKRRQFLYTWRSSMLPPR >Mature_346_residues MIRVAVLLLLLTCHFMVWAHPGEIRHFSTKGPVTAQLRIQGANDVERFAVVIADYQRLHPGSEVIYEEQIASQIYHRYLH PASSQPPPDLLISASMDLQIKLANDGHALAYRSSRTRALPTWAQWRYEVFGIGYEPAVIVYNTRRLPSPQVPRTRHQLLA LLRAPEAPLRGQIGTYDVERSAVGYLLSTQDAQLGSIAGALWEAMGEERVQLEAGTGALLERVASGELLLAYNVLGSYAQ ARVDAGVPLGIVQPEDYTLLALRTAVIPRGGVHVSEAQRFLDYLLSERGQRVLSHEVRLMPVLPGSDRIVSMFRPIALGP GLLVYLDTLKRRQFLYTWRSSMLPPR
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38630; Mature: 38630
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRVAVLLLLLTCHFMVWAHPGEIRHFSTKGPVTAQLRIQGANDVERFAVVIADYQRLHP CHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC GSEVIYEEQIASQIYHRYLHPASSQPPPDLLISASMDLQIKLANDGHALAYRSSRTRALP CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCCCCC TWAQWRYEVFGIGYEPAVIVYNTRRLPSPQVPRTRHQLLALLRAPEAPLRGQIGTYDVER CHHHCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCH SAVGYLLSTQDAQLGSIAGALWEAMGEERVQLEAGTGALLERVASGELLLAYNVLGSYAQ HHHCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEHHHHHHHHH ARVDAGVPLGIVQPEDYTLLALRTAVIPRGGVHVSEAQRFLDYLLSERGQRVLSHEVRLM HHHCCCCCEEEECCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE PVLPGSDRIVSMFRPIALGPGLLVYLDTLKRRQFLYTWRSSMLPPR EECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIRVAVLLLLLTCHFMVWAHPGEIRHFSTKGPVTAQLRIQGANDVERFAVVIADYQRLHP CHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC GSEVIYEEQIASQIYHRYLHPASSQPPPDLLISASMDLQIKLANDGHALAYRSSRTRALP CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCCCCC TWAQWRYEVFGIGYEPAVIVYNTRRLPSPQVPRTRHQLLALLRAPEAPLRGQIGTYDVER CHHHCEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCH SAVGYLLSTQDAQLGSIAGALWEAMGEERVQLEAGTGALLERVASGELLLAYNVLGSYAQ HHHCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEHHHHHHHHH ARVDAGVPLGIVQPEDYTLLALRTAVIPRGGVHVSEAQRFLDYLLSERGQRVLSHEVRLM HHHCCCCCEEEECCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE PVLPGSDRIVSMFRPIALGPGLLVYLDTLKRRQFLYTWRSSMLPPR EECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA