Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is xanA [H]
Identifier: 182680771
GI number: 182680771
Start: 270388
End: 271737
Strand: Reverse
Name: xanA [H]
Synonym: XfasM23_0200
Alternate gene names: 182680771
Gene position: 271737-270388 (Counterclockwise)
Preceding gene: 182680773
Following gene: 182680770
Centisome position: 10.72
GC content: 55.56
Gene sequence:
>1350_bases ATGTCACTACCCGCCTTCAAGGCCTACGACATCCGCGGCCGCGTGCCAGATGAATTAAACGAGGACTTGGCCCGCCGCAT CGGCATCGCACTGGCGGCACAGTTGGACAGAGCAGCCCCTGTGGTCCTGGGCCACGATGTACGCCTGACAAGCCCATCAC TACAAGAGGCACTGTCAGCCGGCCTACGTGCCAGCGGCCGCGAGGTGATTGATATCGGCCTCTGCGGCACCGAAGAGGTC TATTTCCAAACACAATATCGCAATGCGGCTGGTGGCGTGATGGTCACCGCCAGCCACAACCCGATGGATTACAACGGGAT GAAACTCGTACGCGAGCAGGCACGTCCGATCAGCTCAGACACCGGCCTATTCACAATCCGCGATGCTGTTGCCACCGACA TCGCAACCATTACGCCCCCCACTGCCGCAGAACATCAGTATCTGGACAAGTCAGCCTACATTGCACACCTGCTGAGCTAC GTCGACAGCAACGCCCTCAAACCACTGAAGCTGGTCGTCAATGCCGGCAACGGCAGTGCCGGCCTAATCGTTGACCTACT CGCCCCACATCTACCGTTCGAATTCGTGCGTATATTCCACGAACCGGACGGCCACTTTCCAAACGGCATTCCAAACCCAC TGCTGCCTGAAAACCGCGATGCCACCGCACAAGCCGTCAAGCATCACGGTGCAGACCTTGGTATCGCCTGGGACGGAGAT TTCGACCGCTGCTTTTTCTTTGATCACACCGGTCGTTTTATTGAAGGTTACTATCTCGTCGGCCTCTTAGCCTCAGTGAT TCTGTCCAAACATCCTGGTGGAAAAATCGTGCATGACCCACGTCTCATCTGGAACACCGTCGAAATGGTTGAGGCTGCCG GCGGCATCCCGGTACTGTCCAAGAGCGGCCATGCCTTCATCAAAGAAAAAATGCGTAAAGAAAACGCCGTATACGGTGGT GAGATGAGCGCTCACCATTATTTCCGCGAATTTTCCTACGCCGACTCAGGCATGATCCCATGGTTACTGATCGCCGAACT GATCTCACGCAGCGGTCGCTCCCTGGCCGACCTGGTCGAAAGCCGCATGCAGCAATTCCCGTGCAGTGGTGAAATCAACT TTAAAATCACCGATACCAAAACCGCCACAGCACGCATCATGGACCATTACACAGCACAATCTCCGACGATCGACCATACC GACGGAATCAGCGCCGACTTTGGAGATTGGCGTTTCAACCTGCGCAGCTCCAATACCGAACCGCTACTACGCCTGAATGT GGAAACCCGCAACAATGCGGCACTGCTAAAACAACGTACTGATGAAATTTCAGCACTGCTGCGCACCTGA
Upstream 100 bases:
>100_bases ATAGAAATACTGCGCGCTTCGTGACTCCCCGCAACCTGTTGCGACACCTAAACAGGCTAGCTCCAGCTACACTTCAACAT CATTTAGCAAGGAGTTACTC
Downstream 100 bases:
>100_bases AACACCTTCCATCTGCTTCCCACCTCCCCCATGCATGGAGTTAGCCTCGCCTATGAACGATATCCTTCCCGTGATCCTAT CCGGCGGTTCTGGCACCCGG
Product: phosphomannomutase
Products: NA
Alternate protein names: Phosphoglucomutase; PGM; Glucose phosphomutase; Phosphomannomutase; PMM [H]
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MSLPAFKAYDIRGRVPDELNEDLARRIGIALAAQLDRAAPVVLGHDVRLTSPSLQEALSAGLRASGREVIDIGLCGTEEV YFQTQYRNAAGGVMVTASHNPMDYNGMKLVREQARPISSDTGLFTIRDAVATDIATITPPTAAEHQYLDKSAYIAHLLSY VDSNALKPLKLVVNAGNGSAGLIVDLLAPHLPFEFVRIFHEPDGHFPNGIPNPLLPENRDATAQAVKHHGADLGIAWDGD FDRCFFFDHTGRFIEGYYLVGLLASVILSKHPGGKIVHDPRLIWNTVEMVEAAGGIPVLSKSGHAFIKEKMRKENAVYGG EMSAHHYFREFSYADSGMIPWLLIAELISRSGRSLADLVESRMQQFPCSGEINFKITDTKTATARIMDHYTAQSPTIDHT DGISADFGDWRFNLRSSNTEPLLRLNVETRNNAALLKQRTDEISALLRT
Sequences:
>Translated_449_residues MSLPAFKAYDIRGRVPDELNEDLARRIGIALAAQLDRAAPVVLGHDVRLTSPSLQEALSAGLRASGREVIDIGLCGTEEV YFQTQYRNAAGGVMVTASHNPMDYNGMKLVREQARPISSDTGLFTIRDAVATDIATITPPTAAEHQYLDKSAYIAHLLSY VDSNALKPLKLVVNAGNGSAGLIVDLLAPHLPFEFVRIFHEPDGHFPNGIPNPLLPENRDATAQAVKHHGADLGIAWDGD FDRCFFFDHTGRFIEGYYLVGLLASVILSKHPGGKIVHDPRLIWNTVEMVEAAGGIPVLSKSGHAFIKEKMRKENAVYGG EMSAHHYFREFSYADSGMIPWLLIAELISRSGRSLADLVESRMQQFPCSGEINFKITDTKTATARIMDHYTAQSPTIDHT DGISADFGDWRFNLRSSNTEPLLRLNVETRNNAALLKQRTDEISALLRT >Mature_448_residues SLPAFKAYDIRGRVPDELNEDLARRIGIALAAQLDRAAPVVLGHDVRLTSPSLQEALSAGLRASGREVIDIGLCGTEEVY FQTQYRNAAGGVMVTASHNPMDYNGMKLVREQARPISSDTGLFTIRDAVATDIATITPPTAAEHQYLDKSAYIAHLLSYV DSNALKPLKLVVNAGNGSAGLIVDLLAPHLPFEFVRIFHEPDGHFPNGIPNPLLPENRDATAQAVKHHGADLGIAWDGDF DRCFFFDHTGRFIEGYYLVGLLASVILSKHPGGKIVHDPRLIWNTVEMVEAAGGIPVLSKSGHAFIKEKMRKENAVYGGE MSAHHYFREFSYADSGMIPWLLIAELISRSGRSLADLVESRMQQFPCSGEINFKITDTKTATARIMDHYTAQSPTIDHTD GISADFGDWRFNLRSSNTEPLLRLNVETRNNAALLKQRTDEISALLRT
Specific function: Involved in xanthan production [H]
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Escherichia coli, GI1788361, Length=453, Percent_Identity=56.953642384106, Blast_Score=533, Evalue=1e-152, Organism=Escherichia coli, GI1789566, Length=441, Percent_Identity=27.6643990929705, Blast_Score=100, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2; =5.4.2.8 [H]
Molecular weight: Translated: 49419; Mature: 49287
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPAFKAYDIRGRVPDELNEDLARRIGIALAAQLDRAAPVVLGHDVRLTSPSLQEALSA CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCHHHHHHHHH GLRASGREVIDIGLCGTEEVYFQTQYRNAAGGVMVTASHNPMDYNGMKLVREQARPISSD CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCC TGLFTIRDAVATDIATITPPTAAEHQYLDKSAYIAHLLSYVDSNALKPLKLVVNAGNGSA CCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC GLIVDLLAPHLPFEFVRIFHEPDGHFPNGIPNPLLPENRDATAQAVKHHGADLGIAWDGD CHHHHHHCCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC FDRCFFFDHTGRFIEGYYLVGLLASVILSKHPGGKIVHDPRLIWNTVEMVEAAGGIPVLS CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCEEC KSGHAFIKEKMRKENAVYGGEMSAHHYFREFSYADSGMIPWLLIAELISRSGRSLADLVE CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHH SRMQQFPCSGEINFKITDTKTATARIMDHYTAQSPTIDHTDGISADFGDWRFNLRSSNTE HHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC PLLRLNVETRNNAALLKQRTDEISALLRT CEEEEEECCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLPAFKAYDIRGRVPDELNEDLARRIGIALAAQLDRAAPVVLGHDVRLTSPSLQEALSA CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCHHHHHHHHH GLRASGREVIDIGLCGTEEVYFQTQYRNAAGGVMVTASHNPMDYNGMKLVREQARPISSD CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCC TGLFTIRDAVATDIATITPPTAAEHQYLDKSAYIAHLLSYVDSNALKPLKLVVNAGNGSA CCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC GLIVDLLAPHLPFEFVRIFHEPDGHFPNGIPNPLLPENRDATAQAVKHHGADLGIAWDGD CHHHHHHCCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCC FDRCFFFDHTGRFIEGYYLVGLLASVILSKHPGGKIVHDPRLIWNTVEMVEAAGGIPVLS CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCEEC KSGHAFIKEKMRKENAVYGGEMSAHHYFREFSYADSGMIPWLLIAELISRSGRSLADLVE CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHH SRMQQFPCSGEINFKITDTKTATARIMDHYTAQSPTIDHTDGISADFGDWRFNLRSSNTE HHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC PLLRLNVETRNNAALLKQRTDEISALLRT CEEEEEECCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1370280 [H]