Definition | Xylella fastidiosa M23 chromosome, complete genome. |
---|---|
Accession | NC_010577 |
Length | 2,535,690 |
Click here to switch to the map view.
The map label for this gene is yjjV [H]
Identifier: 182680704
GI number: 182680704
Start: 185971
End: 186753
Strand: Reverse
Name: yjjV [H]
Synonym: XfasM23_0133
Alternate gene names: 182680704
Gene position: 186753-185971 (Counterclockwise)
Preceding gene: 182680706
Following gene: 182680703
Centisome position: 7.36
GC content: 52.11
Gene sequence:
>783_bases ATGAATGTTGTATTAATTGACAGCCACTGCCATCTTGATGCCGACACATTTGATGGCGACCGTGCCGAGATAATCGCCCG CGCCCGAGCTGCCGGAATCATTGCGCAAGTAATACCCGCAGTCACTGCAGCTAAATGGCCAAAGCTACGCACCATTTGTA CGCAAACATCAGGACTCTATCCAGCTTACGGACTGCACCCGATGTTTCTAACAGAACATCACCCAACGCACCTACATGCA TTGCGAGACTGGCTAGAACGCGAACGCCCCTGCGCAATTGGCGAATGCGGCCTGGACTTCTACTTGGAAGGACTGAACAG GGAGATGCAGCATACTTACTTCATCAGTCAACTGATGCTTGCGCGAGAGTACACATTGCCAGTGATTGTGCATGCTCGAC ATGCGGTCGAGGAAGTCATCGCATCAATCAAGACGGTAGGAACACTGCGTGGCGTCGTACATAGCTTCTCAGGTAGCCTG GAGCAGGCAAGGCAACTGTGGAAACTAGGCTTCATGATCAGCTTGGGAGGGGCGATGACCTACCCACGTGCTCACCGTTT GCACCGATTGGCGATGGAGACACCATTGGACTGTTTGTTACTGGAAACAGATGCGCCTTACCAACCAGACAGCGAAATCC GTGGGAAACGCAACGAACCAGGGCGTCTGCTGACGATCTTGGACTACATCGCAACGCTGCGCAAACAAGATCGTACTGAA ATATCCAAAGTGACTCGCGCGAATACGGAGCAGTTGTTTGGATTGAAAGTCACATCCACCTGA
Upstream 100 bases:
>100_bases ATTTAGAGTCACTGAACAACGAAGCGATTATTTCGCTCTCGTCATCTTGGCGTCAGCAGAGTAGAAACAGCATGCACCTG CCCTTGCCAAGGCATTACTG
Downstream 100 bases:
>100_bases ATCGCTATCCATATTATTGAGCGTCACTGATTGAAGGATGTTTCACTGGTTAGTCAGTCTATTACAGCAGACACTGACTC ACGGGTAACGGATGTTGATC
Product: TatD-related deoxyribonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGLHPMFLTEHHPTHLHA LRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLMLAREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSL EQARQLWKLGFMISLGGAMTYPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE ISKVTRANTEQLFGLKVTST
Sequences:
>Translated_260_residues MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGLHPMFLTEHHPTHLHA LRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLMLAREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSL EQARQLWKLGFMISLGGAMTYPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE ISKVTRANTEQLFGLKVTST >Mature_260_residues MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGLHPMFLTEHHPTHLHA LRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLMLAREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSL EQARQLWKLGFMISLGGAMTYPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE ISKVTRANTEQLFGLKVTST
Specific function: Unknown
COG id: COG0084
COG function: function code L; Mg-dependent DNase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tatD DNase family [H]
Homologues:
Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=29.811320754717, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=29.811320754717, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=28.7937743190661, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI226061595, Length=225, Percent_Identity=29.3333333333333, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI225903424, Length=268, Percent_Identity=25.7462686567164, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=37.6470588235294, Blast_Score=167, Evalue=5e-43, Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=32.8185328185328, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI48994985, Length=258, Percent_Identity=29.8449612403101, Blast_Score=102, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=25.2631578947368, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=27.7566539923954, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI221330018, Length=272, Percent_Identity=27.2058823529412, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24586117, Length=272, Percent_Identity=27.2058823529412, Blast_Score=81, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015992 - InterPro: IPR001130 - InterPro: IPR018228 - InterPro: IPR012278 [H]
Pfam domain/function: PF01026 TatD_DNase [H]
EC number: 3.1.21.-
Molecular weight: Translated: 29319; Mature: 29319
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLY CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC PAYGLHPMFLTEHHPTHLHALRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLML CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH AREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSLEQARQLWKLGFMISLGGAMT HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC YPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE CHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH ISKVTRANTEQLFGLKVTST HHHHHHCCHHHHEEEEEECC >Mature Secondary Structure MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLY CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC PAYGLHPMFLTEHHPTHLHALRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLML CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH AREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSLEQARQLWKLGFMISLGGAMT HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC YPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE CHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH ISKVTRANTEQLFGLKVTST HHHHHHCCHHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]