Definition Xylella fastidiosa M23 chromosome, complete genome.
Accession NC_010577
Length 2,535,690

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The map label for this gene is yjjV [H]

Identifier: 182680704

GI number: 182680704

Start: 185971

End: 186753

Strand: Reverse

Name: yjjV [H]

Synonym: XfasM23_0133

Alternate gene names: 182680704

Gene position: 186753-185971 (Counterclockwise)

Preceding gene: 182680706

Following gene: 182680703

Centisome position: 7.36

GC content: 52.11

Gene sequence:

>783_bases
ATGAATGTTGTATTAATTGACAGCCACTGCCATCTTGATGCCGACACATTTGATGGCGACCGTGCCGAGATAATCGCCCG
CGCCCGAGCTGCCGGAATCATTGCGCAAGTAATACCCGCAGTCACTGCAGCTAAATGGCCAAAGCTACGCACCATTTGTA
CGCAAACATCAGGACTCTATCCAGCTTACGGACTGCACCCGATGTTTCTAACAGAACATCACCCAACGCACCTACATGCA
TTGCGAGACTGGCTAGAACGCGAACGCCCCTGCGCAATTGGCGAATGCGGCCTGGACTTCTACTTGGAAGGACTGAACAG
GGAGATGCAGCATACTTACTTCATCAGTCAACTGATGCTTGCGCGAGAGTACACATTGCCAGTGATTGTGCATGCTCGAC
ATGCGGTCGAGGAAGTCATCGCATCAATCAAGACGGTAGGAACACTGCGTGGCGTCGTACATAGCTTCTCAGGTAGCCTG
GAGCAGGCAAGGCAACTGTGGAAACTAGGCTTCATGATCAGCTTGGGAGGGGCGATGACCTACCCACGTGCTCACCGTTT
GCACCGATTGGCGATGGAGACACCATTGGACTGTTTGTTACTGGAAACAGATGCGCCTTACCAACCAGACAGCGAAATCC
GTGGGAAACGCAACGAACCAGGGCGTCTGCTGACGATCTTGGACTACATCGCAACGCTGCGCAAACAAGATCGTACTGAA
ATATCCAAAGTGACTCGCGCGAATACGGAGCAGTTGTTTGGATTGAAAGTCACATCCACCTGA

Upstream 100 bases:

>100_bases
ATTTAGAGTCACTGAACAACGAAGCGATTATTTCGCTCTCGTCATCTTGGCGTCAGCAGAGTAGAAACAGCATGCACCTG
CCCTTGCCAAGGCATTACTG

Downstream 100 bases:

>100_bases
ATCGCTATCCATATTATTGAGCGTCACTGATTGAAGGATGTTTCACTGGTTAGTCAGTCTATTACAGCAGACACTGACTC
ACGGGTAACGGATGTTGATC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGLHPMFLTEHHPTHLHA
LRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLMLAREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSL
EQARQLWKLGFMISLGGAMTYPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE
ISKVTRANTEQLFGLKVTST

Sequences:

>Translated_260_residues
MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGLHPMFLTEHHPTHLHA
LRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLMLAREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSL
EQARQLWKLGFMISLGGAMTYPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE
ISKVTRANTEQLFGLKVTST
>Mature_260_residues
MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLYPAYGLHPMFLTEHHPTHLHA
LRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLMLAREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSL
EQARQLWKLGFMISLGGAMTYPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE
ISKVTRANTEQLFGLKVTST

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=29.811320754717, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=29.811320754717, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=28.7937743190661, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI226061595, Length=225, Percent_Identity=29.3333333333333, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI225903424, Length=268, Percent_Identity=25.7462686567164, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=37.6470588235294, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=32.8185328185328, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI48994985, Length=258, Percent_Identity=29.8449612403101, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=25.2631578947368, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=27.7566539923954, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI221330018, Length=272, Percent_Identity=27.2058823529412, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24586117, Length=272, Percent_Identity=27.2058823529412, Blast_Score=81, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29319; Mature: 29319

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLY
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
PAYGLHPMFLTEHHPTHLHALRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLML
CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
AREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSLEQARQLWKLGFMISLGGAMT
HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
YPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE
CHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
ISKVTRANTEQLFGLKVTST
HHHHHHCCHHHHEEEEEECC
>Mature Secondary Structure
MNVVLIDSHCHLDADTFDGDRAEIIARARAAGIIAQVIPAVTAAKWPKLRTICTQTSGLY
CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
PAYGLHPMFLTEHHPTHLHALRDWLERERPCAIGECGLDFYLEGLNREMQHTYFISQLML
CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
AREYTLPVIVHARHAVEEVIASIKTVGTLRGVVHSFSGSLEQARQLWKLGFMISLGGAMT
HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
YPRAHRLHRLAMETPLDCLLLETDAPYQPDSEIRGKRNEPGRLLTILDYIATLRKQDRTE
CHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
ISKVTRANTEQLFGLKVTST
HHHHHHCCHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]