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The map label for this gene is comF [H]

Identifier: 182680612

GI number: 182680612

Start: 56714

End: 57439

Strand: Reverse

Name: comF [H]

Synonym: XfasM23_0040

Alternate gene names: 182680612

Gene position: 57439-56714 (Counterclockwise)

Preceding gene: 182680616

Following gene: 182680611

Centisome position: 2.27

GC content: 51.65

Gene sequence:

>726_bases
ATGAAAGACGCTGTCAACTCGAATCACATATTGACTGACACTTGGTGTGATCGCCTGCTGCGCTGGTTACTCCCATCCTA
CTGTCTGGCCTGCAATGAACCAGGCCACCAAGGCAAAACATTATGTGCAACCTGTCAACTTCTTCTGCCACGGATGGAGA
ACGCCTGTCTCCGCTGCGCTGCCCCACTTAAAGAACTTGAAGGCATACACCCAACATGTGGTCCCTGCTTATACGATCCA
CCACCGTTGGAAACAGCCCACGCAGCATTTCTATACCACTGGCCAATTAACAAACTCATATCGCGTTTCAAATTTCACCA
AGATTTAGAATGTGGCCACCTATTAGCTGACAACATGGCCATGGCTGCGCAACATTGGCCGCGACCGCAAGCACTTGTCC
CTGTGAGCTTACACCACGGACGTTTGCTTACACGCGGCTACGATCAGGCTCTTGAATTAGCACGCCACCTCGGAAACAGA
TTGCAACTACCATGCCTGCCAGCATTACGCCGAGTGCGTGCAACCATCCCACAATCTCAACTCAATGCAAATAAACGCCG
CAGCAACCTGCACAATGCATTCATTCCCATACATCCACTCCCTACACACGTTGCCCTCGTTGATGATGTGATGACAACAG
GCACTACCCTACATGCAGCAGCACGAGCATTACGCCACACTGGGGTTACAAGGATCGATGCCTGGATCTGCGCACGCGTG
CCATGA

Upstream 100 bases:

>100_bases
CAGCGCATGTAACTCTTCGGCAGTCCAGTCGTAGCGGATGATAGAGGACATCAACGTTTCCTGACGGTAACCGATCAACA
AGTTCGGCAGTCTGGTCAGG

Downstream 100 bases:

>100_bases
GCAGATCAGCAACACCGGCAACACCGGCAACACCGGCAACACCGGCAACACAACCACCTTACCCCATCTGTAATGCATTT
TCCGAAATGCGGGCATAATC

Product: competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKDAVNSNHILTDTWCDRLLRWLLPSYCLACNEPGHQGKTLCATCQLLLPRMENACLRCAAPLKELEGIHPTCGPCLYDP
PPLETAHAAFLYHWPINKLISRFKFHQDLECGHLLADNMAMAAQHWPRPQALVPVSLHHGRLLTRGYDQALELARHLGNR
LQLPCLPALRRVRATIPQSQLNANKRRSNLHNAFIPIHPLPTHVALVDDVMTTGTTLHAAARALRHTGVTRIDAWICARV
P

Sequences:

>Translated_241_residues
MKDAVNSNHILTDTWCDRLLRWLLPSYCLACNEPGHQGKTLCATCQLLLPRMENACLRCAAPLKELEGIHPTCGPCLYDP
PPLETAHAAFLYHWPINKLISRFKFHQDLECGHLLADNMAMAAQHWPRPQALVPVSLHHGRLLTRGYDQALELARHLGNR
LQLPCLPALRRVRATIPQSQLNANKRRSNLHNAFIPIHPLPTHVALVDDVMTTGTTLHAAARALRHTGVTRIDAWICARV
P
>Mature_241_residues
MKDAVNSNHILTDTWCDRLLRWLLPSYCLACNEPGHQGKTLCATCQLLLPRMENACLRCAAPLKELEGIHPTCGPCLYDP
PPLETAHAAFLYHWPINKLISRFKFHQDLECGHLLADNMAMAAQHWPRPQALVPVSLHHGRLLTRGYDQALELARHLGNR
LQLPCLPALRRVRATIPQSQLNANKRRSNLHNAFIPIHPLPTHVALVDDVMTTGTTLHAAARALRHTGVTRIDAWICARV
P

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=230, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27047; Mature: 27047

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAVNSNHILTDTWCDRLLRWLLPSYCLACNEPGHQGKTLCATCQLLLPRMENACLRCA
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
APLKELEGIHPTCGPCLYDPPPLETAHAAFLYHWPINKLISRFKFHQDLECGHLLADNMA
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEECCHHHHHHHHHHHCCCCHHHHHHHHHH
MAAQHWPRPQALVPVSLHHGRLLTRGYDQALELARHLGNRLQLPCLPALRRVRATIPQSQ
HHHHHCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
LNANKRRSNLHNAFIPIHPLPTHVALVDDVMTTGTTLHAAARALRHTGVTRIDAWICARV
HHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCC
P
C
>Mature Secondary Structure
MKDAVNSNHILTDTWCDRLLRWLLPSYCLACNEPGHQGKTLCATCQLLLPRMENACLRCA
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
APLKELEGIHPTCGPCLYDPPPLETAHAAFLYHWPINKLISRFKFHQDLECGHLLADNMA
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEECCHHHHHHHHHHHCCCCHHHHHHHHHH
MAAQHWPRPQALVPVSLHHGRLLTRGYDQALELARHLGNRLQLPCLPALRRVRATIPQSQ
HHHHHCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
LNANKRRSNLHNAFIPIHPLPTHVALVDDVMTTGTTLHAAARALRHTGVTRIDAWICARV
HHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]