| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is pbpC [H]
Identifier: 182677599
GI number: 182677599
Start: 678038
End: 680113
Strand: Direct
Name: pbpC [H]
Synonym: Bind_0605
Alternate gene names: 182677599
Gene position: 678038-680113 (Clockwise)
Preceding gene: 182677598
Following gene: 182677602
Centisome position: 16.26
GC content: 62.24
Gene sequence:
>2076_bases ATGATAGGCTGGCACAAGATCGCGACGAGGGTTGCTGCCGGTTGTGTTTGTGTCGGAATGGTTTTGGCCGGGCTCCTGTT GGCCGACTTGGCCTTTCCACCGCCGCTTGATGAAGCTGATATTGCCTCGGTGGAAGTGCTGGACGCGGACGGTTTGTTGC TGCGCGCCTTCACCATGAAGGAAGGACGTTGGCGGTTGCGCACGCGAATCGAGGATGTCGATCCGCAATTGATTCGCATG GTGATCTCTTATGAGGACCAGCGTTTCTGGCACCATCCAGGCATTGATCCGCTGGCGCTCGGCCGTGCCTTGATGCAGTT GGTTGCCCATGGCCATATCGTTTCTGGCGGTTCCACTCTGTCCATGCAGGTGGCGCGGTTGATTGAGCCGCGTGAAGGGC GTTCGGTGCCCGCCAAATTGCGTCAGATCGCGCGGGCCCTTCAGATTGAACGGCGGTTGAGCAAGCGTCAGATTCTCGAA CTCTATCTGACGCGCGCGCCTTATGGCGGCAATCTGGAAGGTGTCAGGGCGGCGAGCCTTGCCTATTTCGGCAAGGAACC GCGCCATTTGACCCTGGCGCAGACGGCTTTGCTCGTCGCCTTGCCGCAAATGCCGGAAAAGCGCCGGCCCGATCTTCATC CCGCCGAGGCTCTCGCCGCCCGCCAACGTGTGCTGGAACGGGGAGCCGTGGGGGTGGACGCGGAGGATGTGGCGCAAGCA AGGCTAGTCGCTTTGCCGGATCGGCGTTTGAACCTGCCCGCTTTCGCACCGCATCTTGCCGAGGCGGCTCTCCGCAAAGC GCCAGAGGCGTGGCAACATCGCACCAGTTTGCGGCGGCGGATCCAGCAAGGGCTTGAAGCCGTCGCTCGCGACGCCGCGG CGAGAATTGGCGCAAAGCTCTCTCTCGCTATGGTCATGGCCGATGTGCATTCGGGCGACATCGTGGCCGAGGTGGGGTCG GCGGATTATTTCGATGCCGTCCGGTCCGGCTGGATTGATATGACACGCGTGCCCCGTTCGCCCGGTTCGGCTCTGAAACC GTTCATTTATGGGCTGGCCTTCGAGGAAGGATTGATCGCGCAGGAGACCCTTATCGAAGACCGGCCCGCCGATTTTTTTG GGTACAGGCCGCGCAATTTCGATCTGAGCTATCAGGGCGATGTGAGTATCCGCCAAGCGCTGCAACTTTCTTTGAATGTG CCAGCGATGCGGCTGCTCGATGCGCTCGGTCCGGTCCGCTTGCTGGTGCGGTTTCGCCGCGCGGGCGTGCGGCTCGCCTT GCCCGCGCATGAAGCGCCGGGCCTTGCGATCGGTCTCGGCGGAGTCGGCATCACGCTGATGGATCTGGTGCAACTCTATG CGGGGCTTGTCGATCGTGAGCGGCTGATGCGGCTCGGTGATCGCATCCATGGCCAGCCGGAACGAATCGAGGGAGCGCCC TTGCTGGAACCAGCCGCTGCCTGGAATGTCGCCGATATTCTGTCCGGCGTCTTGCCACCGGTCGGCGCCGCGCCACGGCG CATCGCCTATAAGACCGGCACGAGTTATGGCTATCGTGATGCTTGGTCGATTGGATTCGACGGTCGCTATGTCTTGGGGG TCTGGGTTGGCCGACCGGATAATGGGGCGGTTCCGGGCCTCACCGGCTATGGGACCGCCGCCCCGATTCTCTTCGAAGCC TTCACGCGTTCCGGCGTTGCCGCAACGCCTCTGCCGCCGGCGCCAGTTGGAGTCGGGCGGCTTGCCCTGACGAATCTGCC GATCAGCCAGCGACGATTCGCGAGCACTGCGGATGGTCTGCCTTCGCTCTTCGTAGCGGAGCCGCCGCCACAAATCGTTT ACCCACCCGAGGGCGCGCATGTGGATCTTGGCGCGGAACCTGATGGCATGCCGCTGGTTTTGAAATTACAGGGAGGGCTG GCGCCTTTTCGATGGCTCGCCAATGGCAAACCGCTGCCGGAATTATCCCGGGGCCGCACGAGCCAATGGGTGCCTGACGG GGACGGCTTTTCTATTCTGATGGTCATTGACGCCGTTGGGCGCACGGCTAGCGTTAGTCTCTATATCGATCGATGA
Upstream 100 bases:
>100_bases GCATTTATGATCATCCGGCGGCGACGGTCGAGGATATGTATCGGCCACAATTTTCCGCGCAGACATCCACGGGGCGGATG GAGGTCGTGGCGGGGCAGAA
Downstream 100 bases:
>100_bases ATAACCTTTTGAGCTTCCTTGGTTTTTGTTTCTATGTCTCTTTTTTGAAGAAATTGGATTGACAGTCGGAACGGGGGAGA TCTATAAGGCGTTCATCGAC
Product: penicillin-binding protein 1C
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 691; Mature: 691
Protein sequence:
>691_residues MIGWHKIATRVAAGCVCVGMVLAGLLLADLAFPPPLDEADIASVEVLDADGLLLRAFTMKEGRWRLRTRIEDVDPQLIRM VISYEDQRFWHHPGIDPLALGRALMQLVAHGHIVSGGSTLSMQVARLIEPREGRSVPAKLRQIARALQIERRLSKRQILE LYLTRAPYGGNLEGVRAASLAYFGKEPRHLTLAQTALLVALPQMPEKRRPDLHPAEALAARQRVLERGAVGVDAEDVAQA RLVALPDRRLNLPAFAPHLAEAALRKAPEAWQHRTSLRRRIQQGLEAVARDAAARIGAKLSLAMVMADVHSGDIVAEVGS ADYFDAVRSGWIDMTRVPRSPGSALKPFIYGLAFEEGLIAQETLIEDRPADFFGYRPRNFDLSYQGDVSIRQALQLSLNV PAMRLLDALGPVRLLVRFRRAGVRLALPAHEAPGLAIGLGGVGITLMDLVQLYAGLVDRERLMRLGDRIHGQPERIEGAP LLEPAAAWNVADILSGVLPPVGAAPRRIAYKTGTSYGYRDAWSIGFDGRYVLGVWVGRPDNGAVPGLTGYGTAAPILFEA FTRSGVAATPLPPAPVGVGRLALTNLPISQRRFASTADGLPSLFVAEPPPQIVYPPEGAHVDLGAEPDGMPLVLKLQGGL APFRWLANGKPLPELSRGRTSQWVPDGDGFSILMVIDAVGRTASVSLYIDR
Sequences:
>Translated_691_residues MIGWHKIATRVAAGCVCVGMVLAGLLLADLAFPPPLDEADIASVEVLDADGLLLRAFTMKEGRWRLRTRIEDVDPQLIRM VISYEDQRFWHHPGIDPLALGRALMQLVAHGHIVSGGSTLSMQVARLIEPREGRSVPAKLRQIARALQIERRLSKRQILE LYLTRAPYGGNLEGVRAASLAYFGKEPRHLTLAQTALLVALPQMPEKRRPDLHPAEALAARQRVLERGAVGVDAEDVAQA RLVALPDRRLNLPAFAPHLAEAALRKAPEAWQHRTSLRRRIQQGLEAVARDAAARIGAKLSLAMVMADVHSGDIVAEVGS ADYFDAVRSGWIDMTRVPRSPGSALKPFIYGLAFEEGLIAQETLIEDRPADFFGYRPRNFDLSYQGDVSIRQALQLSLNV PAMRLLDALGPVRLLVRFRRAGVRLALPAHEAPGLAIGLGGVGITLMDLVQLYAGLVDRERLMRLGDRIHGQPERIEGAP LLEPAAAWNVADILSGVLPPVGAAPRRIAYKTGTSYGYRDAWSIGFDGRYVLGVWVGRPDNGAVPGLTGYGTAAPILFEA FTRSGVAATPLPPAPVGVGRLALTNLPISQRRFASTADGLPSLFVAEPPPQIVYPPEGAHVDLGAEPDGMPLVLKLQGGL APFRWLANGKPLPELSRGRTSQWVPDGDGFSILMVIDAVGRTASVSLYIDR >Mature_691_residues MIGWHKIATRVAAGCVCVGMVLAGLLLADLAFPPPLDEADIASVEVLDADGLLLRAFTMKEGRWRLRTRIEDVDPQLIRM VISYEDQRFWHHPGIDPLALGRALMQLVAHGHIVSGGSTLSMQVARLIEPREGRSVPAKLRQIARALQIERRLSKRQILE LYLTRAPYGGNLEGVRAASLAYFGKEPRHLTLAQTALLVALPQMPEKRRPDLHPAEALAARQRVLERGAVGVDAEDVAQA RLVALPDRRLNLPAFAPHLAEAALRKAPEAWQHRTSLRRRIQQGLEAVARDAAARIGAKLSLAMVMADVHSGDIVAEVGS ADYFDAVRSGWIDMTRVPRSPGSALKPFIYGLAFEEGLIAQETLIEDRPADFFGYRPRNFDLSYQGDVSIRQALQLSLNV PAMRLLDALGPVRLLVRFRRAGVRLALPAHEAPGLAIGLGGVGITLMDLVQLYAGLVDRERLMRLGDRIHGQPERIEGAP LLEPAAAWNVADILSGVLPPVGAAPRRIAYKTGTSYGYRDAWSIGFDGRYVLGVWVGRPDNGAVPGLTGYGTAAPILFEA FTRSGVAATPLPPAPVGVGRLALTNLPISQRRFASTADGLPSLFVAEPPPQIVYPPEGAHVDLGAEPDGMPLVLKLQGGL APFRWLANGKPLPELSRGRTSQWVPDGDGFSILMVIDAVGRTASVSLYIDR
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=563, Percent_Identity=42.2735346358792, Blast_Score=388, Evalue=1e-109, Organism=Escherichia coli, GI87082258, Length=261, Percent_Identity=27.5862068965517, Blast_Score=114, Evalue=3e-26, Organism=Escherichia coli, GI1786343, Length=544, Percent_Identity=27.5735294117647, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1789601, Length=132, Percent_Identity=34.8484848484849, Blast_Score=71, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 74932; Mature: 74932
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGWHKIATRVAAGCVCVGMVLAGLLLADLAFPPPLDEADIASVEVLDADGLLLRAFTMK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEECC EGRWRLRTRIEDVDPQLIRMVISYEDQRFWHHPGIDPLALGRALMQLVAHGHIVSGGSTL CCCCHHHHHHCCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHCCCEECCCCHH SMQVARLIEPREGRSVPAKLRQIARALQIERRLSKRQILELYLTRAPYGGNLEGVRAASL HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH AYFGKEPRHLTLAQTALLVALPQMPEKRRPDLHPAEALAARQRVLERGAVGVDAEDVAQA HHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH RLVALPDRRLNLPAFAPHLAEAALRKAPEAWQHRTSLRRRIQQGLEAVARDAAARIGAKL HHEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH SLAMVMADVHSGDIVAEVGSADYFDAVRSGWIDMTRVPRSPGSALKPFIYGLAFEEGLIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCHH QETLIEDRPADFFGYRPRNFDLSYQGDVSIRQALQLSLNVPAMRLLDALGPVRLLVRFRR HHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH AGVRLALPAHEAPGLAIGLGGVGITLMDLVQLYAGLVDRERLMRLGDRIHGQPERIEGAP CCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LLEPAAAWNVADILSGVLPPVGAAPRRIAYKTGTSYGYRDAWSIGFDGRYVLGVWVGRPD CCCHHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCC NGAVPGLTGYGTAAPILFEAFTRSGVAATPLPPAPVGVGRLALTNLPISQRRFASTADGL CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHCCCC PSLFVAEPPPQIVYPPEGAHVDLGAEPDGMPLVLKLQGGLAPFRWLANGKPLPELSRGRT CCEEECCCCCCEEECCCCCEEECCCCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHCCCC SQWVPDGDGFSILMVIDAVGRTASVSLYIDR CCCCCCCCCCEEEEEEECCCCCEEEEEEEEC >Mature Secondary Structure MIGWHKIATRVAAGCVCVGMVLAGLLLADLAFPPPLDEADIASVEVLDADGLLLRAFTMK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEEECC EGRWRLRTRIEDVDPQLIRMVISYEDQRFWHHPGIDPLALGRALMQLVAHGHIVSGGSTL CCCCHHHHHHCCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHCCCEECCCCHH SMQVARLIEPREGRSVPAKLRQIARALQIERRLSKRQILELYLTRAPYGGNLEGVRAASL HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH AYFGKEPRHLTLAQTALLVALPQMPEKRRPDLHPAEALAARQRVLERGAVGVDAEDVAQA HHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH RLVALPDRRLNLPAFAPHLAEAALRKAPEAWQHRTSLRRRIQQGLEAVARDAAARIGAKL HHEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH SLAMVMADVHSGDIVAEVGSADYFDAVRSGWIDMTRVPRSPGSALKPFIYGLAFEEGLIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCHH QETLIEDRPADFFGYRPRNFDLSYQGDVSIRQALQLSLNVPAMRLLDALGPVRLLVRFRR HHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH AGVRLALPAHEAPGLAIGLGGVGITLMDLVQLYAGLVDRERLMRLGDRIHGQPERIEGAP CCEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC LLEPAAAWNVADILSGVLPPVGAAPRRIAYKTGTSYGYRDAWSIGFDGRYVLGVWVGRPD CCCHHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEECCCCEEEEEEEEECCC NGAVPGLTGYGTAAPILFEAFTRSGVAATPLPPAPVGVGRLALTNLPISQRRFASTADGL CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHCCCC PSLFVAEPPPQIVYPPEGAHVDLGAEPDGMPLVLKLQGGLAPFRWLANGKPLPELSRGRT CCEEECCCCCCEEECCCCCEEECCCCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHCCCC SQWVPDGDGFSILMVIDAVGRTASVSLYIDR CCCCCCCCCCEEEEEEECCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]