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The map label for this gene is yafK [H]

Identifier: 182677537

GI number: 182677537

Start: 598222

End: 599445

Strand: Direct

Name: yafK [H]

Synonym: Bind_0542

Alternate gene names: 182677537

Gene position: 598222-599445 (Clockwise)

Preceding gene: 182677534

Following gene: 182677539

Centisome position: 14.35

GC content: 57.76

Gene sequence:

>1224_bases
ATGGATTTTAAGTCATGGGTAAGGGTTTGGCGTGCGGTATCCATCCTTGTCGCCTTTTTCGCCTGCCAGCAAGGGGCTGT
GGCGGGCGGCTATTCCAAAGGCGAAACACCGATCCCAGGGGCGACGCTTGCCTTGATGAGGGCAAGGGATACCACAGCGG
AGGCACCGATCCTCATTCGGACCTACAAGAAGGAAGCGGAACTCGAAATCTGGAAACAGGCCAGGAATGGACGCTTCGTC
CTGCTCAAGACATTCCCCATTTGCCGTTGGTCGGGCCAGCTCGGCCCCAAATCGCAGCAAGGCGATCGGCAGGCTCCGGA
AGGGTTTTATTGGGTCGGCCCCAAACAGATGAACCCGAATTCCGCTTATTACCTCTCCTTCGACGTCGGATATCCAAATG
CCTACGACAAAGCTCACGGAGGCTCTGGATCCTATGTGATGGTGCATGGCACGTGTTCATCGGCCGGATGTTTCGCCATG
ACCGATAAAGGTGTCGGTGAGATCTATGCCATCGCTCGCGAGGCTTTGAGGGGTGGTCAGCAGGCCTTTCAATTTCAGGC
CTATCCGTTTCGCATGACGGCGCAAAACATGGCCAAATACCGTCTTGATGCGAATATCGCATTCTGGCGTCAACTCAAGG
AAGGGTCGGATCGCTTCGAGGCCACCGGAGAAGAACCTTTGGTCAGTGTTGCCTCCGGACGCTATGTCTTCAGCCCCTCA
AAGGATCCAGACAAGGAGACCCTGGCGCAGACGCACCATTTGGAAGAGCAGGCCCGCATCGCCACTCTCGTTGCCGAAGG
AAGCGCCGCCATACAGACCACTTATGCGGACGGAGGCCAACACCCCGCTTTCCGTGCGCTCGCCCGCCAAGGAACGCTTC
TCGGGGAGGTGAGCCGTCCTGAGGCGCTTGCTGATGCTGGACGGGAGGTCATTATCGTGCCAGCTCATCCAAAGCGGCTG
GCAAAAGGTGGCGCGGCCGCGCGTTTAATTCAAACCGCCGCCGCAAAGGGAACGAATCCAACAGAAGCGAAGCCGGTGCC
ATCAATGGTATCTGCCTCTTTGGTGCCTTCTGCGTCTTCTGTATTTGGTCCTGTCGTGCAATCCAAGACCGAGCCGTCGG
TGTTTGCGCCGGCACCCATGAGCTACAGATTGGGACGGTTGGCGCCCGCCCAATCTATGATGACGGGGGCCATGCCGATC
CTGCCTGCCGTTTTGGTCGATTGA

Upstream 100 bases:

>100_bases
AATCCGGTATCAGTGGCGAGGCCGATGGCGACCAAGTCTAAAAACTATAAGCCTATTGTGCCGAGAAGCGGCGAAATTCT
GTCCAAGAGCCGGGGGCCGA

Downstream 100 bases:

>100_bases
CGTTTGAACAGTCGACCCGCCGTAAGCTCCGGGACATTCGGGAAGGCCCTAACGGTCACTTTTATGACCGTTAGGGGCTA
CACTCGTCCTTATCGCTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MDFKSWVRVWRAVSILVAFFACQQGAVAGGYSKGETPIPGATLALMRARDTTAEAPILIRTYKKEAELEIWKQARNGRFV
LLKTFPICRWSGQLGPKSQQGDRQAPEGFYWVGPKQMNPNSAYYLSFDVGYPNAYDKAHGGSGSYVMVHGTCSSAGCFAM
TDKGVGEIYAIAREALRGGQQAFQFQAYPFRMTAQNMAKYRLDANIAFWRQLKEGSDRFEATGEEPLVSVASGRYVFSPS
KDPDKETLAQTHHLEEQARIATLVAEGSAAIQTTYADGGQHPAFRALARQGTLLGEVSRPEALADAGREVIIVPAHPKRL
AKGGAAARLIQTAAAKGTNPTEAKPVPSMVSASLVPSASSVFGPVVQSKTEPSVFAPAPMSYRLGRLAPAQSMMTGAMPI
LPAVLVD

Sequences:

>Translated_407_residues
MDFKSWVRVWRAVSILVAFFACQQGAVAGGYSKGETPIPGATLALMRARDTTAEAPILIRTYKKEAELEIWKQARNGRFV
LLKTFPICRWSGQLGPKSQQGDRQAPEGFYWVGPKQMNPNSAYYLSFDVGYPNAYDKAHGGSGSYVMVHGTCSSAGCFAM
TDKGVGEIYAIAREALRGGQQAFQFQAYPFRMTAQNMAKYRLDANIAFWRQLKEGSDRFEATGEEPLVSVASGRYVFSPS
KDPDKETLAQTHHLEEQARIATLVAEGSAAIQTTYADGGQHPAFRALARQGTLLGEVSRPEALADAGREVIIVPAHPKRL
AKGGAAARLIQTAAAKGTNPTEAKPVPSMVSASLVPSASSVFGPVVQSKTEPSVFAPAPMSYRLGRLAPAQSMMTGAMPI
LPAVLVD
>Mature_407_residues
MDFKSWVRVWRAVSILVAFFACQQGAVAGGYSKGETPIPGATLALMRARDTTAEAPILIRTYKKEAELEIWKQARNGRFV
LLKTFPICRWSGQLGPKSQQGDRQAPEGFYWVGPKQMNPNSAYYLSFDVGYPNAYDKAHGGSGSYVMVHGTCSSAGCFAM
TDKGVGEIYAIAREALRGGQQAFQFQAYPFRMTAQNMAKYRLDANIAFWRQLKEGSDRFEATGEEPLVSVASGRYVFSPS
KDPDKETLAQTHHLEEQARIATLVAEGSAAIQTTYADGGQHPAFRALARQGTLLGEVSRPEALADAGREVIIVPAHPKRL
AKGGAAARLIQTAAAKGTNPTEAKPVPSMVSASLVPSASSVFGPVVQSKTEPSVFAPAPMSYRLGRLAPAQSMMTGAMPI
LPAVLVD

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=230, Percent_Identity=40.4347826086956, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 43854; Mature: 43854

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKSWVRVWRAVSILVAFFACQQGAVAGGYSKGETPIPGATLALMRARDTTAEAPILIR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCEEEE
TYKKEAELEIWKQARNGRFVLLKTFPICRWSGQLGPKSQQGDRQAPEGFYWVGPKQMNPN
ECCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
SAYYLSFDVGYPNAYDKAHGGSGSYVMVHGTCSSAGCFAMTDKGVGEIYAIAREALRGGQ
CEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHCCH
QAFQFQAYPFRMTAQNMAKYRLDANIAFWRQLKEGSDRFEATGEEPLVSVASGRYVFSPS
HHHEEECCCEEECHHHHHHHHCCCCHHHHHHHHCCCCHHCCCCCCCEEEEECCCEEECCC
KDPDKETLAQTHHLEEQARIATLVAEGSAAIQTTYADGGQHPAFRALARQGTLLGEVSRP
CCCCHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCEEECCCCC
EALADAGREVIIVPAHPKRLAKGGAAARLIQTAAAKGTNPTEAKPVPSMVSASLVPSASS
HHHHHCCCEEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHH
VFGPVVQSKTEPSVFAPAPMSYRLGRLAPAQSMMTGAMPILPAVLVD
HHHHHHCCCCCCCEECCCCCHHHHCCCCCHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MDFKSWVRVWRAVSILVAFFACQQGAVAGGYSKGETPIPGATLALMRARDTTAEAPILIR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCEEEE
TYKKEAELEIWKQARNGRFVLLKTFPICRWSGQLGPKSQQGDRQAPEGFYWVGPKQMNPN
ECCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
SAYYLSFDVGYPNAYDKAHGGSGSYVMVHGTCSSAGCFAMTDKGVGEIYAIAREALRGGQ
CEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHCCH
QAFQFQAYPFRMTAQNMAKYRLDANIAFWRQLKEGSDRFEATGEEPLVSVASGRYVFSPS
HHHEEECCCEEECHHHHHHHHCCCCHHHHHHHHCCCCHHCCCCCCCEEEEECCCEEECCC
KDPDKETLAQTHHLEEQARIATLVAEGSAAIQTTYADGGQHPAFRALARQGTLLGEVSRP
CCCCHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCEEECCCCC
EALADAGREVIIVPAHPKRLAKGGAAARLIQTAAAKGTNPTEAKPVPSMVSASLVPSASS
HHHHHCCCEEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHH
VFGPVVQSKTEPSVFAPAPMSYRLGRLAPAQSMMTGAMPILPAVLVD
HHHHHHCCCCCCCEECCCCCHHHHCCCCCHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]