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The map label for this gene is yebA [H]

Identifier: 182677415

GI number: 182677415

Start: 473624

End: 475711

Strand: Direct

Name: yebA [H]

Synonym: Bind_0419

Alternate gene names: 182677415

Gene position: 473624-475711 (Clockwise)

Preceding gene: 182677407

Following gene: 182677416

Centisome position: 11.36

GC content: 59.77

Gene sequence:

>2088_bases
ATGCATTTTTACGGCGGCGTGATGCGGATGCGTAGTCTGGCCGCGTATCGATCGACGGATCGCCGTGGCGGCGCGGTGGA
ACTCGGCAACGAGCCGGCGATCGATACGGATGGTGAGCAACACGATATTTTCGATCGGCGACAGGTGTCCCTGCGCTGGC
TTGCCGGTACGATCCTCACCGGCCTGTCCGGGGCGGGGTTGATCGGCGCGGCCATCTACGCGGCTTTCGATCATCAGTCG
CATTTTGCCGAGGCGCCGATGCTGGCCGCCCCCCCCCATAGGGAAACGGCGCAGGAAAGCGGAATCAATGGGCGCAAGGG
CGATCGGCTGGTCAAATCCGTCGATATTGTCGCTGCCAAACAGTCATTTCGTGCGCCGATGACCTTGAAGATCGGTGAGA
AGGAAGTCGTCAAGACACATTCGTTCACGCGGGTCGAAACCACTTTGTTGCAAGCCAGCGCCGGCTATGGCGACGATATT
CCGCCGTTCAATCCGCTCAAACTTCTTGCCGATGCGCGCAATCCCGTCGATGTGCCGCAAGAACCCGTGCAGGACGATGC
CGAAGTCTCCTGGGCATTGCGCGATCTTGTCGGCCAGCCGGTTTCGACGCAGGCCGTATTGTCCGGCGATGAAGTCCAGG
CGCAATTGGCCGAGCAGATCAAGAATCCGATGAATGCCGGCACGAAGCTTTTGACCCTGCCGCCGCAGATGCTCTTGATG
AAGACGAGCCGGGCCAATCCCCTGGGCAATGGCATAGGGCATAATTTCGGCCGATCCGGTGCCGCCGCCGTCCTCGCCTA
TGCCAATCCGGAGGATACGGGGTTGAATGCCCCCTTCTCCTCGATCGATGTCCGCATGGTGCCGGAAAATGTCACGGTCG
TGGCGCGTTCCTCGGCGTCACCGCAATCCACGCAAAGCGGCGAAAAGCTCGTTGTCCTGCGCCATGGTGAAGCGGTGGAG
GATATTTTGCGCAATGCCGGTCTGTCCAAGGATCGGATTGCCGCGATCATCCAGGCTTTCGGCGCGCGCCGGGGCGAGGC
CGCAGTGGCCGAGGGACGCAAGCTGAAATTGCAATTCGCCGATTTCGATGGCAGTGGCGGCGAGGCGATCTTGGCGAGGC
TGTCCGTCTATGCCGACGAGACGCTCGAAACAACGATCGCCATGACCGATCAAGGCCGTTATATGCGCGTGATCTCCCGG
AACGAGGAGCCGGTGGCGCGGCGGCGGTCCGAGGATACGGATGATGACGATGCCGGCGGCATGCGGCTTTATGAGTCGCT
TTACGAGACGGCTCTCAAACAGGATATTCCCAGACGGATTGTCGACGAACTGGTCCGAATCTTCGCCAATGATGTTGATT
TCCAGCGTACGGTCGCAGCGGGAGATTCCTTCTCGGCCTTCTATGATGAGGCCGAGGAAGGCGATCATCTACCGGAATTG
CTCTATGCGACGGTGACGACGCGCAACGAAACTTTCCGCTATTATCGTTTCCAGACACCTGATGACAATGGTGTCGATTT
TTATGATCCGAATGGCCGTTCGACCCGCAAGTTCCTGGTGCGCGTGCCGCTTGCCGCTGAGAAAATGACGTCGGGCTTCG
GCACCCGTTTCCATCCCATTCTCGGTTATTCGCGCCCGCATACAGGCGTCGATTGGGCGGCGCCCATTGGCACACCAATC
TTTGCCGCTGGCAATGGAACCGTGCTCAAGGCAGGCTGGGATTCAGGCTATGGCCGCCGGGTCGAGATCCAGCATGCCAA
TGGCTATATCACCACCTATAATCATATGTCCGGCTTCGCCAAGGGCATGAGCGAGGGGATGCGGGTCCGCCAGGGGCAGG
TCATCGGTTACCTCGGCCAGACCGGTCTCGCGACTGGGCCGCATCTCCATTATGAAGTGATCGTCAACGGCCATTTCGTT
GATCCGCTCCGTGTGAAACTCGCCCAGACGCGCGAATTCGACGGACCCATGCTGGCAACGTTCAAACGCGAGCGCGAACG
GATCGATGGCCTGCTGGCCCTGGCGCCCAATGCGACCAGTTCGATCGTTGCTGATCGCCGTGGTAATCGCAATCGCGCTA
TTCCGTAA

Upstream 100 bases:

>100_bases
ATGGTCTTGTCTTACGCGAGTCGTCAATTTCGACGATGCGGCTGAAACGATTTGGAAAAACGTCTTGCCACGGCTATGGT
CCAAAAAATGACGGAAGAGA

Downstream 100 bases:

>100_bases
AAGCGGACGCTCTCTCCATCCAATGTCTCGTGATGGAGCAGGGGCCGCCAGTCCAAGCGGTCACCGTCAAAGCCAATCGG
CAAGTCGCAAAAAGTGAAAA

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 695; Mature: 695

Protein sequence:

>695_residues
MHFYGGVMRMRSLAAYRSTDRRGGAVELGNEPAIDTDGEQHDIFDRRQVSLRWLAGTILTGLSGAGLIGAAIYAAFDHQS
HFAEAPMLAAPPHRETAQESGINGRKGDRLVKSVDIVAAKQSFRAPMTLKIGEKEVVKTHSFTRVETTLLQASAGYGDDI
PPFNPLKLLADARNPVDVPQEPVQDDAEVSWALRDLVGQPVSTQAVLSGDEVQAQLAEQIKNPMNAGTKLLTLPPQMLLM
KTSRANPLGNGIGHNFGRSGAAAVLAYANPEDTGLNAPFSSIDVRMVPENVTVVARSSASPQSTQSGEKLVVLRHGEAVE
DILRNAGLSKDRIAAIIQAFGARRGEAAVAEGRKLKLQFADFDGSGGEAILARLSVYADETLETTIAMTDQGRYMRVISR
NEEPVARRRSEDTDDDDAGGMRLYESLYETALKQDIPRRIVDELVRIFANDVDFQRTVAAGDSFSAFYDEAEEGDHLPEL
LYATVTTRNETFRYYRFQTPDDNGVDFYDPNGRSTRKFLVRVPLAAEKMTSGFGTRFHPILGYSRPHTGVDWAAPIGTPI
FAAGNGTVLKAGWDSGYGRRVEIQHANGYITTYNHMSGFAKGMSEGMRVRQGQVIGYLGQTGLATGPHLHYEVIVNGHFV
DPLRVKLAQTREFDGPMLATFKRERERIDGLLALAPNATSSIVADRRGNRNRAIP

Sequences:

>Translated_695_residues
MHFYGGVMRMRSLAAYRSTDRRGGAVELGNEPAIDTDGEQHDIFDRRQVSLRWLAGTILTGLSGAGLIGAAIYAAFDHQS
HFAEAPMLAAPPHRETAQESGINGRKGDRLVKSVDIVAAKQSFRAPMTLKIGEKEVVKTHSFTRVETTLLQASAGYGDDI
PPFNPLKLLADARNPVDVPQEPVQDDAEVSWALRDLVGQPVSTQAVLSGDEVQAQLAEQIKNPMNAGTKLLTLPPQMLLM
KTSRANPLGNGIGHNFGRSGAAAVLAYANPEDTGLNAPFSSIDVRMVPENVTVVARSSASPQSTQSGEKLVVLRHGEAVE
DILRNAGLSKDRIAAIIQAFGARRGEAAVAEGRKLKLQFADFDGSGGEAILARLSVYADETLETTIAMTDQGRYMRVISR
NEEPVARRRSEDTDDDDAGGMRLYESLYETALKQDIPRRIVDELVRIFANDVDFQRTVAAGDSFSAFYDEAEEGDHLPEL
LYATVTTRNETFRYYRFQTPDDNGVDFYDPNGRSTRKFLVRVPLAAEKMTSGFGTRFHPILGYSRPHTGVDWAAPIGTPI
FAAGNGTVLKAGWDSGYGRRVEIQHANGYITTYNHMSGFAKGMSEGMRVRQGQVIGYLGQTGLATGPHLHYEVIVNGHFV
DPLRVKLAQTREFDGPMLATFKRERERIDGLLALAPNATSSIVADRRGNRNRAIP
>Mature_695_residues
MHFYGGVMRMRSLAAYRSTDRRGGAVELGNEPAIDTDGEQHDIFDRRQVSLRWLAGTILTGLSGAGLIGAAIYAAFDHQS
HFAEAPMLAAPPHRETAQESGINGRKGDRLVKSVDIVAAKQSFRAPMTLKIGEKEVVKTHSFTRVETTLLQASAGYGDDI
PPFNPLKLLADARNPVDVPQEPVQDDAEVSWALRDLVGQPVSTQAVLSGDEVQAQLAEQIKNPMNAGTKLLTLPPQMLLM
KTSRANPLGNGIGHNFGRSGAAAVLAYANPEDTGLNAPFSSIDVRMVPENVTVVARSSASPQSTQSGEKLVVLRHGEAVE
DILRNAGLSKDRIAAIIQAFGARRGEAAVAEGRKLKLQFADFDGSGGEAILARLSVYADETLETTIAMTDQGRYMRVISR
NEEPVARRRSEDTDDDDAGGMRLYESLYETALKQDIPRRIVDELVRIFANDVDFQRTVAAGDSFSAFYDEAEEGDHLPEL
LYATVTTRNETFRYYRFQTPDDNGVDFYDPNGRSTRKFLVRVPLAAEKMTSGFGTRFHPILGYSRPHTGVDWAAPIGTPI
FAAGNGTVLKAGWDSGYGRRVEIQHANGYITTYNHMSGFAKGMSEGMRVRQGQVIGYLGQTGLATGPHLHYEVIVNGHFV
DPLRVKLAQTREFDGPMLATFKRERERIDGLLALAPNATSSIVADRRGNRNRAIP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=218, Percent_Identity=34.8623853211009, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=39.1752577319588, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 75928; Mature: 75928

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFYGGVMRMRSLAAYRSTDRRGGAVELGNEPAIDTDGEQHDIFDRRQVSLRWLAGTILT
CCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GLSGAGLIGAAIYAAFDHQSHFAEAPMLAAPPHRETAQESGINGRKGDRLVKSVDIVAAK
CCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
QSFRAPMTLKIGEKEVVKTHSFTRVETTLLQASAGYGDDIPPFNPLKLLADARNPVDVPQ
HHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCC
EPVQDDAEVSWALRDLVGQPVSTQAVLSGDEVQAQLAEQIKNPMNAGTKLLTLPPQMLLM
CCCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHE
KTSRANPLGNGIGHNFGRSGAAAVLAYANPEDTGLNAPFSSIDVRMVPENVTVVARSSAS
ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCC
PQSTQSGEKLVVLRHGEAVEDILRNAGLSKDRIAAIIQAFGARRGEAAVAEGRKLKLQFA
CCCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEE
DFDGSGGEAILARLSVYADETLETTIAMTDQGRYMRVISRNEEPVARRRSEDTDDDDAGG
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCH
MRLYESLYETALKQDIPRRIVDELVRIFANDVDFQRTVAAGDSFSAFYDEAEEGDHLPEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCCCHHHHHCCHHCCCCCHHH
LYATVTTRNETFRYYRFQTPDDNGVDFYDPNGRSTRKFLVRVPLAAEKMTSGFGTRFHPI
HEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHH
LGYSRPHTGVDWAAPIGTPIFAAGNGTVLKAGWDSGYGRRVEIQHANGYITTYNHMSGFA
CCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEEECCCEEEEEHHHHHHH
KGMSEGMRVRQGQVIGYLGQTGLATGPHLHYEVIVNGHFVDPLRVKLAQTREFDGPMLAT
HHHHHCCEECCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCHHHH
FKRERERIDGLLALAPNATSSIVADRRGNRNRAIP
HHHHHHHHCEEEEECCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHFYGGVMRMRSLAAYRSTDRRGGAVELGNEPAIDTDGEQHDIFDRRQVSLRWLAGTILT
CCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GLSGAGLIGAAIYAAFDHQSHFAEAPMLAAPPHRETAQESGINGRKGDRLVKSVDIVAAK
CCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
QSFRAPMTLKIGEKEVVKTHSFTRVETTLLQASAGYGDDIPPFNPLKLLADARNPVDVPQ
HHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCC
EPVQDDAEVSWALRDLVGQPVSTQAVLSGDEVQAQLAEQIKNPMNAGTKLLTLPPQMLLM
CCCCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHE
KTSRANPLGNGIGHNFGRSGAAAVLAYANPEDTGLNAPFSSIDVRMVPENVTVVARSSAS
ECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEECCCC
PQSTQSGEKLVVLRHGEAVEDILRNAGLSKDRIAAIIQAFGARRGEAAVAEGRKLKLQFA
CCCCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEE
DFDGSGGEAILARLSVYADETLETTIAMTDQGRYMRVISRNEEPVARRRSEDTDDDDAGG
CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCH
MRLYESLYETALKQDIPRRIVDELVRIFANDVDFQRTVAAGDSFSAFYDEAEEGDHLPEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCCCHHHHHCCHHCCCCCHHH
LYATVTTRNETFRYYRFQTPDDNGVDFYDPNGRSTRKFLVRVPLAAEKMTSGFGTRFHPI
HEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHH
LGYSRPHTGVDWAAPIGTPIFAAGNGTVLKAGWDSGYGRRVEIQHANGYITTYNHMSGFA
CCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCEEEEEECCCEEEEEHHHHHHH
KGMSEGMRVRQGQVIGYLGQTGLATGPHLHYEVIVNGHFVDPLRVKLAQTREFDGPMLAT
HHHHHCCEECCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCHHHH
FKRERERIDGLLALAPNATSSIVADRRGNRNRAIP
HHHHHHHHCEEEEECCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]