Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
---|---|
Accession | NC_010581 |
Length | 4,170,153 |
Click here to switch to the map view.
The map label for this gene is 182677311
Identifier: 182677311
GI number: 182677311
Start: 358441
End: 359901
Strand: Direct
Name: 182677311
Synonym: Bind_0314
Alternate gene names: NA
Gene position: 358441-359901 (Clockwise)
Preceding gene: 182677310
Following gene: 182677312
Centisome position: 8.6
GC content: 62.15
Gene sequence:
>1461_bases GTGACGGCCGTCCAAAAACCTCCGTCGCGAAGTCTTCTAGCGCCTTGCCTTGCTGTTGGGTTGCTTCTTGGCGGTTGCGC GACGTTCTCGCCGGATGGCGGCCTGTCGCCGGCGCGAGAGGCCGCAGCCTCGGCTCTCCAGGGGGAGGTGACCAAGATCA CCGATGACACCCAGGAGGAGGGCGCCCGGGCAAGGGTTGCCGCGCTGCTTCGAGCGCCGCTCACGCCACGAGCGGCAGTC GAAATCGCCTTGCTGCGGAATAAGGGTCTGCAGGCGGCTTTCAATGATCTCGGCGTCTCGGAAGCGCAATTCGTGCAGGA AAGTCTGCCGCCGCCGCCACAATTCTCGATCTCGCGGCTCGCGGGGGAGGGCGATGTCGAGGTCATCCGCCAGCTTGCCG TCAGTCTTTTCGCGCTGGCGACGCTGCCCTCACGCACTGCTATCGCCAGGGAGAATTTCACCGTTGCGCAATGGCGGGCG GCGGAACAGGTGCTGGCGCTCGCGGCCAGTGTCCGGCGGCAATATTATACGGCTGTTGCGGCCAATGCGCAGGTGGCTTT CCTGCAGCGCTCGGTGGCCTCGGCCGAAGTCGCTGCTGATCTTGCCCGCAAGCTTGGCGAGGCCGGTAACCTGAATACAT TGGAACAGGCTCGCGCCGGGGCCTTCTTCGCGGAAATGGGCGCCCAGCTTGCCGATGCGCGGATACAAGCTCAGGCCGAA CGGGAGAGACTCACGCGGCTGATGGGCCTTTGGGGCCGCGACATTGCCTTCAAACTGCCGGAGACTCTGCCAGCTCTCCC GAAGGGAATCGCCAGCGCAAAGGATATTGAAGCCAAAGCTTTGTCGGAGCGCGTCGATCTCAAGGCCGGCCGGCATGAAT TGGCGGGGCTCGCCGCCCAATATGGCCTGACCAATGCGACCCGCTACGTCAGCGATATCACGCTGGCCTATCAGAATGAC AGTGAGTGGGCCGGTAATGTCGGTGGCTCCGTCCTCGGCACGGAATTCAATAATAAGCTCATCCGCAATGGCTTCGATGT CAGCTTCACCATCCCCATCTATGATTTTGGTGAGACGAATGTGCGCGGCGCGCGAGAGACATACATGGCCTCGGCCAATC GTCTTGCCCAGCGGGCCATCGATGTACGCTCGCAGGCGCGGGAGGCCTATCTGCGTTATCGCGGCAAATATGACCTTGCC CGCTATTACGCGAAAAACGTTCTGCCCTTGCGCAAGATTATCGTCGATGAAACCGCGCTGCAACTCAACGGCATGATCGC CGATATCACCCAGTTGATCGTCGATGGCCAGATGCGGATCACCAGCAACAATGCCGCGATCACCGCGCAGCGGGATTTCT TCATCGCCTCGGTCGATCTCGCAGCGGCGACTTATGGCGGCGGCTTTGGGGGCGGTGGTCCCTCCAGCGTGGCGACGAGC AGCACAGCTGCGGCAAATTGA
Upstream 100 bases:
>100_bases CACCGGCCGAGCCGAAGGATTGGCGGCAATTGAATCGGGATGTGACGCCTAGCGTCAAAACACGCCCGATGGACGCAATG CCTGGCATGGGAGCTGGTTC
Downstream 100 bases:
>100_bases GAGAGGAGCCTCCCATGGCAGAGACTAAAGGGGTTTCCCGTCGGCATGTTCTTGGCGGTGGCGGGCTCGTCCTGGCCTCG GCCGCGATGATCGGGAGCCG
Product: outer membrane efflux protein
Products: NA
Alternate protein names: Copper lerance Protein; Copper Resistance-Related Lipoprotein; Outer Membrane Efflux Protein Involved In Copper Resistance; Metal Ion Efflux Outer Membrane Protein; Outer Membrane Protein; Copper Resistance-Related Protein; TypeIsecretion System Outer Membrane Chanel Lipoprotein; Copper Resistance Protein; Outer Membrane Protein-Like Protein; Efflux Protein; Outer Membrane Efflux Protein Involved
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MTAVQKPPSRSLLAPCLAVGLLLGGCATFSPDGGLSPAREAAASALQGEVTKITDDTQEEGARARVAALLRAPLTPRAAV EIALLRNKGLQAAFNDLGVSEAQFVQESLPPPPQFSISRLAGEGDVEVIRQLAVSLFALATLPSRTAIARENFTVAQWRA AEQVLALAASVRRQYYTAVAANAQVAFLQRSVASAEVAADLARKLGEAGNLNTLEQARAGAFFAEMGAQLADARIQAQAE RERLTRLMGLWGRDIAFKLPETLPALPKGIASAKDIEAKALSERVDLKAGRHELAGLAAQYGLTNATRYVSDITLAYQND SEWAGNVGGSVLGTEFNNKLIRNGFDVSFTIPIYDFGETNVRGARETYMASANRLAQRAIDVRSQAREAYLRYRGKYDLA RYYAKNVLPLRKIIVDETALQLNGMIADITQLIVDGQMRITSNNAAITAQRDFFIASVDLAAATYGGGFGGGGPSSVATS STAAAN
Sequences:
>Translated_486_residues MTAVQKPPSRSLLAPCLAVGLLLGGCATFSPDGGLSPAREAAASALQGEVTKITDDTQEEGARARVAALLRAPLTPRAAV EIALLRNKGLQAAFNDLGVSEAQFVQESLPPPPQFSISRLAGEGDVEVIRQLAVSLFALATLPSRTAIARENFTVAQWRA AEQVLALAASVRRQYYTAVAANAQVAFLQRSVASAEVAADLARKLGEAGNLNTLEQARAGAFFAEMGAQLADARIQAQAE RERLTRLMGLWGRDIAFKLPETLPALPKGIASAKDIEAKALSERVDLKAGRHELAGLAAQYGLTNATRYVSDITLAYQND SEWAGNVGGSVLGTEFNNKLIRNGFDVSFTIPIYDFGETNVRGARETYMASANRLAQRAIDVRSQAREAYLRYRGKYDLA RYYAKNVLPLRKIIVDETALQLNGMIADITQLIVDGQMRITSNNAAITAQRDFFIASVDLAAATYGGGFGGGGPSSVATS STAAAN >Mature_485_residues TAVQKPPSRSLLAPCLAVGLLLGGCATFSPDGGLSPAREAAASALQGEVTKITDDTQEEGARARVAALLRAPLTPRAAVE IALLRNKGLQAAFNDLGVSEAQFVQESLPPPPQFSISRLAGEGDVEVIRQLAVSLFALATLPSRTAIARENFTVAQWRAA EQVLALAASVRRQYYTAVAANAQVAFLQRSVASAEVAADLARKLGEAGNLNTLEQARAGAFFAEMGAQLADARIQAQAER ERLTRLMGLWGRDIAFKLPETLPALPKGIASAKDIEAKALSERVDLKAGRHELAGLAAQYGLTNATRYVSDITLAYQNDS EWAGNVGGSVLGTEFNNKLIRNGFDVSFTIPIYDFGETNVRGARETYMASANRLAQRAIDVRSQAREAYLRYRGKYDLAR YYAKNVLPLRKIIVDETALQLNGMIADITQLIVDGQMRITSNNAAITAQRDFFIASVDLAAATYGGGFGGGGPSSVATSS TAAAN
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51723; Mature: 51592
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVQKPPSRSLLAPCLAVGLLLGGCATFSPDGGLSPAREAAASALQGEVTKITDDTQEE CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCHHH GARARVAALLRAPLTPRAAVEIALLRNKGLQAAFNDLGVSEAQFVQESLPPPPQFSISRL HHHHHHHHHHHCCCCCHHHHEEHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH AGEGDVEVIRQLAVSLFALATLPSRTAIARENFTVAQWRAAEQVLALAASVRRQYYTAVA CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ANAQVAFLQRSVASAEVAADLARKLGEAGNLNTLEQARAGAFFAEMGAQLADARIQAQAE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RERLTRLMGLWGRDIAFKLPETLPALPKGIASAKDIEAKALSERVDLKAGRHELAGLAAQ HHHHHHHHHCCCCCHHEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH YGLTNATRYVSDITLAYQNDSEWAGNVGGSVLGTEFNNKLIRNGFDVSFTIPIYDFGETN HCCCHHHHHHHHEEEEEECCCCCCCCCCCCEECCHHHHHHHHCCCCEEEEEEEEECCCCC VRGARETYMASANRLAQRAIDVRSQAREAYLRYRGKYDLARYYAKNVLPLRKIIVDETAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH QLNGMIADITQLIVDGQMRITSNNAAITAQRDFFIASVDLAAATYGGGFGGGGPSSVATS HHCCHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEEEHHHHHHCCCCCCCCCCCHHCCC STAAAN CCCCCC >Mature Secondary Structure TAVQKPPSRSLLAPCLAVGLLLGGCATFSPDGGLSPAREAAASALQGEVTKITDDTQEE CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCHHH GARARVAALLRAPLTPRAAVEIALLRNKGLQAAFNDLGVSEAQFVQESLPPPPQFSISRL HHHHHHHHHHHCCCCCHHHHEEHHHHCCCCHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH AGEGDVEVIRQLAVSLFALATLPSRTAIARENFTVAQWRAAEQVLALAASVRRQYYTAVA CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ANAQVAFLQRSVASAEVAADLARKLGEAGNLNTLEQARAGAFFAEMGAQLADARIQAQAE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RERLTRLMGLWGRDIAFKLPETLPALPKGIASAKDIEAKALSERVDLKAGRHELAGLAAQ HHHHHHHHHCCCCCHHEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH YGLTNATRYVSDITLAYQNDSEWAGNVGGSVLGTEFNNKLIRNGFDVSFTIPIYDFGETN HCCCHHHHHHHHEEEEEECCCCCCCCCCCCEECCHHHHHHHHCCCCEEEEEEEEECCCCC VRGARETYMASANRLAQRAIDVRSQAREAYLRYRGKYDLARYYAKNVLPLRKIIVDETAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH QLNGMIADITQLIVDGQMRITSNNAAITAQRDFFIASVDLAAATYGGGFGGGGPSSVATS HHCCHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEEEHHHHHHCCCCCCCCCCCHHCCC STAAAN CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA