| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is uvrB [H]
Identifier: 182677288
GI number: 182677288
Start: 330987
End: 333641
Strand: Direct
Name: uvrB [H]
Synonym: Bind_0291
Alternate gene names: 182677288
Gene position: 330987-333641 (Clockwise)
Preceding gene: 182677287
Following gene: 182677289
Centisome position: 7.94
GC content: 58.98
Gene sequence:
>2655_bases ATGCCCAAAGCTCCTTCCTCCCCGCGAACGGCCCAATCCAAGACCGCTGAGCCGGCGGTTGCCAAAAAGCCAAGAACCTC CAAGGCGAAGGCCTCCAAGCCGGAGGTTCAGCCGCTCGACGAGCATCTTGCTGCCCTGCTCAATCCGGCTCTGAACAAAT CGCTCGCCACGCTCGAAGAGCATGGCGAGCCATCGGGCTTTGCCGAGGCGCGGGCGGCTTTTCATTTCGATGTGGAACCC TTGGAGATGGAGGCGCCGGCCCGCAGGCGCGGCGGCCGGGGCACGGCCGCGAAGCCGGCTTTCTCGGAGCTCACCGGGGC CTCGGCGACAGCGGAATCCTTGCAGGACCTCTTGGCGCGGGGCGATCCCAATCTGCGCGAGCGGCCTCCGTGGCAGCCGC ATCGTCCGCCCCGGCCCGACAAAAGCGAAGGGGGCCATGCGTTCGAAATTGTCTCGGATTACACTCCGCAAGGCGATCAG CCGCAGGCGATCGATGAATTAGTCACTGGCATCAAAGCTCAGGAACGCGATCAGGTTCTGCTTGGCGTCACCGGCTCCGG TAAAACCTTCACCATGGCGCAGGTCATCGCCCGCACCAATCGCCCCGCCTTGATCCTTGCCCCCAATAAAACTTTGGCCG CGCAGCTCTATGGCGAGTTCAAAAGCTTCTTTCCCAATAATGCGGTCGAATATTTCGTTTCTTATTACGATTATTACCAG CCGGAAGCCTATGTGCCGCGTTCCGACACCTATATCGAGAAGGAAAGCTCGATCAACGAGCAGATCGACCGGATGCGCCA CGCCGCGACCCGTGCCCTGCTCGAGCGCGATGATGTGATTATCGTCGCTTCCGTGTCCTGTATCTATGGTATCGGCTCGG TCGAGACCTATACGGCCATGACCTTCACCTTGAAACGGGGCGAGCGGATCGACCAGCGCCAATTGATCGGTGATCTCGTT GCCTTGCAATACAAGCGTTCAGCGGGCGATTTTTCGCGCGGCGTGTTCCGGGTGCGCGGCGATACGCTCGAATTATTTCC AGCCCATTATGAGGATCGCGCCTGGCGTATTGGCTTTTTCGGCGATGAGATTGAAAGCATCGTTGAATTTGATCCCCTGA CCGGCAAGAAAGTGCAGGATCTCGAATTCGTTAAGGTTTATGCTAATTCCCATTATGTGACGCCGCGCCCGACACTGTTG CAATCGATCAAGGGCATCAAGCAGGAATTGAAGCAGCGCCTCGATGAACTGAATGCGGCGGGCCGATTGCTGGAGGCGCA AAGGCTCGAACAGCGCACGGTCTTTGATCTTGAAATGCTGGAAGCGACGGGATCTTGCGCCGGCATCGAGAATTATTCGC GCTATCTGACCGGCCGCAGGCCCGGTGAGCCGCCGCCAACCCTGTTTGAATATCTCCCCGATAATGCGCTCGTTTTTACC GATGAGTCGCATGTCACCGTGCCGCAGATCGGTGCCATGTATCGCGGCGACTTCCGGCGTAAGGCGACGCTCGCCGAATA TGGTTTCCGTCTGCCGTCCTGTCTCGATAATCGCCCGCTGCGTTTCGAGGAATGGGAGGCGATGCGGCCGCAAACGGTGC ATGTTTCCGCGACGCCCGGTTCCTGGGAAATGGAGCAGACCGGCGGTGTCTTCGTCGAACAGGTCATCCGCCCGACGGGC CTCATCGATCCACCCGTCGAGGTACATCCGGCGCGCTCGCAGGTTGATGATCTCCTCGATGAATTGCGCCAGGTCACGCG CCAAGGCTATCGCAGCCTCGTCACGGTGCTAACCAAACGCATGGCCGAGGATCTGACCGAATATTTGCACGAGGCTGGCA TCCGCGTGCGTTACATGCATTCCGATATTGATACGATCGAGCGTATCGAGATTATCCGCGATCTCAGGCTCGGCGCTTTC GATGTCCTGATCGGCATCAATCTGTTGCGCGAGGGACTCGATATTCCCGAATGTGGTTTCGTTGCTATTCTCGACGCCGA CAAGGAAGGCTTTTTGCGGAGCGAAACCTCATTGGTGCAGACGATCGGCCGCGCCGCCCGTAATGTCGAAGGCAAAGTTA TTCTCTATGCCGATCACGAGACCGGATCGATGCAACGCGCCATGGCCGAGACGACGCGCCGCCGCGAGAAGCAGGAAGCT TATAATAGGGAACATGGCATTACGCCGGCGACGATCAAACGCGGCATTCACGACATTCTGGGTTCTGTCTACGAGCAGGA TCATGTGAGTGTCGATGCCGGTCTCGCCCAGGCCGATCTCAAGCCCGGCCATAATTTCAAGATGACCATTGCCGATCTCG AAAAGCGTATGCGCGAGGCGGCGGCCAATCTCGAATTCGAGGCGGCGGCCCGCTACCGCGATGAATTGCAACGGTTACAG GCGGTCGAATTGGCTGTTTCCGATGATCCGCTGGCGCGCCAGGAAGAGGTTGAGGAACAGGCCGGGGCCTATAAGGGCGC ACGCAAATATGGCGCCGCCGCCAATCTGCCGGTGAACCGTCCGCACAAACCGACCGATGCCGAAATGGGGCCGCATAATT TTGGCGGTGGCGAAGCCAAGCCGCATGCAGGTTCCGGTAAATCTCCCCAGCGCATGAAGCGGCGGGCTTCGAAGCCTACG CGTTCCGCATCCTGA
Upstream 100 bases:
>100_bases AGCCGTCTATCTTTGGCTTTTGGCCTTACGAAAATAGAATTAATTTAAACAGTACAATGGAGTGTTCGCGAAGAAGCCAG TCCGATATTATATTGACCCC
Downstream 100 bases:
>100_bases GAAAATGACACGGACATATTGTCCCGTATGACGTTCCAGATTTTTTGAAGTGTAACGCACGACCGACAACCCATCGCGTG ATTTTATGTTGATCGGCCAT
Product: excinuclease ABC subunit B
Products: NA
Alternate protein names: Protein uvrB; Excinuclease ABC subunit B [H]
Number of amino acids: Translated: 884; Mature: 883
Protein sequence:
>884_residues MPKAPSSPRTAQSKTAEPAVAKKPRTSKAKASKPEVQPLDEHLAALLNPALNKSLATLEEHGEPSGFAEARAAFHFDVEP LEMEAPARRRGGRGTAAKPAFSELTGASATAESLQDLLARGDPNLRERPPWQPHRPPRPDKSEGGHAFEIVSDYTPQGDQ PQAIDELVTGIKAQERDQVLLGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQ PEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFTLKRGERIDQRQLIGDLV ALQYKRSAGDFSRGVFRVRGDTLELFPAHYEDRAWRIGFFGDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLL QSIKGIKQELKQRLDELNAAGRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALVFT DESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTVHVSATPGSWEMEQTGGVFVEQVIRPTG LIDPPVEVHPARSQVDDLLDELRQVTRQGYRSLVTVLTKRMAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAF DVLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAMAETTRRREKQEA YNREHGITPATIKRGIHDILGSVYEQDHVSVDAGLAQADLKPGHNFKMTIADLEKRMREAAANLEFEAAARYRDELQRLQ AVELAVSDDPLARQEEVEEQAGAYKGARKYGAAANLPVNRPHKPTDAEMGPHNFGGGEAKPHAGSGKSPQRMKRRASKPT RSAS
Sequences:
>Translated_884_residues MPKAPSSPRTAQSKTAEPAVAKKPRTSKAKASKPEVQPLDEHLAALLNPALNKSLATLEEHGEPSGFAEARAAFHFDVEP LEMEAPARRRGGRGTAAKPAFSELTGASATAESLQDLLARGDPNLRERPPWQPHRPPRPDKSEGGHAFEIVSDYTPQGDQ PQAIDELVTGIKAQERDQVLLGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQ PEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFTLKRGERIDQRQLIGDLV ALQYKRSAGDFSRGVFRVRGDTLELFPAHYEDRAWRIGFFGDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLL QSIKGIKQELKQRLDELNAAGRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALVFT DESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTVHVSATPGSWEMEQTGGVFVEQVIRPTG LIDPPVEVHPARSQVDDLLDELRQVTRQGYRSLVTVLTKRMAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAF DVLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAMAETTRRREKQEA YNREHGITPATIKRGIHDILGSVYEQDHVSVDAGLAQADLKPGHNFKMTIADLEKRMREAAANLEFEAAARYRDELQRLQ AVELAVSDDPLARQEEVEEQAGAYKGARKYGAAANLPVNRPHKPTDAEMGPHNFGGGEAKPHAGSGKSPQRMKRRASKPT RSAS >Mature_883_residues PKAPSSPRTAQSKTAEPAVAKKPRTSKAKASKPEVQPLDEHLAALLNPALNKSLATLEEHGEPSGFAEARAAFHFDVEPL EMEAPARRRGGRGTAAKPAFSELTGASATAESLQDLLARGDPNLRERPPWQPHRPPRPDKSEGGHAFEIVSDYTPQGDQP QAIDELVTGIKAQERDQVLLGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQP EAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFTLKRGERIDQRQLIGDLVA LQYKRSAGDFSRGVFRVRGDTLELFPAHYEDRAWRIGFFGDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLLQ SIKGIKQELKQRLDELNAAGRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALVFTD ESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTVHVSATPGSWEMEQTGGVFVEQVIRPTGL IDPPVEVHPARSQVDDLLDELRQVTRQGYRSLVTVLTKRMAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAFD VLIGINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAMAETTRRREKQEAY NREHGITPATIKRGIHDILGSVYEQDHVSVDAGLAQADLKPGHNFKMTIADLEKRMREAAANLEFEAAARYRDELQRLQA VELAVSDDPLARQEEVEEQAGAYKGARKYGAAANLPVNRPHKPTDAEMGPHNFGGGEAKPHAGSGKSPQRMKRRASKPTR SAS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. Upon binding of the uvrA(2)B(2) complex to a putative damaged site, the DNA
COG id: COG0556
COG function: function code L; Helicase subunit of the DNA excision repair complex
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 UVR domain [H]
Homologues:
Organism=Escherichia coli, GI1786996, Length=677, Percent_Identity=58.3456425406204, Blast_Score=771, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR001943 - InterPro: IPR004807 - InterPro: IPR009055 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII; PF02151 UVR [H]
EC number: NA
Molecular weight: Translated: 98686; Mature: 98555
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS50151 UVR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKAPSSPRTAQSKTAEPAVAKKPRTSKAKASKPEVQPLDEHLAALLNPALNKSLATLEE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HGEPSGFAEARAAFHFDVEPLEMEAPARRRGGRGTAAKPAFSELTGASATAESLQDLLAR CCCCCCHHHHHHEEEECCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHC GDPNLRERPPWQPHRPPRPDKSEGGHAFEIVSDYTPQGDQPQAIDELVTGIKAQERDQVL CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEE LGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQ EEECCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC PEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAM CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCHHHEEE TFTLKRGERIDQRQLIGDLVALQYKRSAGDFSRGVFRVRGDTLELFPAHYEDRAWRIGFF EEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCEEEECCCCCCCCCEEEECC GDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLLQSIKGIKQELKQRLDELNAA HHHHHHHHHCCCCCCCCCCCCCEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHH GRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALVFT HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEE DESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTVHVSATPG CCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHCCCCCCCHHHHCCCCCEEEEEECCC SWEMEQTGGVFVEQVIRPTGLIDPPVEVHPARSQVDDLLDELRQVTRQGYRSLVTVLTKR CCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPECGF HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCE VAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAMAETTRRREKQEA EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH YNREHGITPATIKRGIHDILGSVYEQDHVSVDAGLAQADLKPGHNFKMTIADLEKRMREA HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHCCCCCCCCEEEHHHHHHHHHHH AANLEFEAAARYRDELQRLQAVELAVSDDPLARQEEVEEQAGAYKGARKYGAAANLPVNR HHCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PHKPTDAEMGPHNFGGGEAKPHAGSGKSPQRMKRRASKPTRSAS CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure PKAPSSPRTAQSKTAEPAVAKKPRTSKAKASKPEVQPLDEHLAALLNPALNKSLATLEE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HGEPSGFAEARAAFHFDVEPLEMEAPARRRGGRGTAAKPAFSELTGASATAESLQDLLAR CCCCCCHHHHHHEEEECCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHC GDPNLRERPPWQPHRPPRPDKSEGGHAFEIVSDYTPQGDQPQAIDELVTGIKAQERDQVL CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEE LGVTGSGKTFTMAQVIARTNRPALILAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQ EEECCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC PEAYVPRSDTYIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAM CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCHHHEEE TFTLKRGERIDQRQLIGDLVALQYKRSAGDFSRGVFRVRGDTLELFPAHYEDRAWRIGFF EEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCEEEECCCCCCCCCEEEECC GDEIESIVEFDPLTGKKVQDLEFVKVYANSHYVTPRPTLLQSIKGIKQELKQRLDELNAA HHHHHHHHHCCCCCCCCCCCCCEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHHHHHHH GRLLEAQRLEQRTVFDLEMLEATGSCAGIENYSRYLTGRRPGEPPPTLFEYLPDNALVFT HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEE DESHVTVPQIGAMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWEAMRPQTVHVSATPG CCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHCCCCCCCHHHHCCCCCEEEEEECCC SWEMEQTGGVFVEQVIRPTGLIDPPVEVHPARSQVDDLLDELRQVTRQGYRSLVTVLTKR CCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MAEDLTEYLHEAGIRVRYMHSDIDTIERIEIIRDLRLGAFDVLIGINLLREGLDIPECGF HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCE VAILDADKEGFLRSETSLVQTIGRAARNVEGKVILYADHETGSMQRAMAETTRRREKQEA EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH YNREHGITPATIKRGIHDILGSVYEQDHVSVDAGLAQADLKPGHNFKMTIADLEKRMREA HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHCCCCCCCCEEEHHHHHHHHHHH AANLEFEAAARYRDELQRLQAVELAVSDDPLARQEEVEEQAGAYKGARKYGAAANLPVNR HHCCCHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PHKPTDAEMGPHNFGGGEAKPHAGSGKSPQRMKRRASKPTRSAS CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]