Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 182677117

GI number: 182677117

Start: 132371

End: 132988

Strand: Direct

Name: ydcN [H]

Synonym: Bind_0116

Alternate gene names: 182677117

Gene position: 132371-132988 (Clockwise)

Preceding gene: 182677114

Following gene: 182677118

Centisome position: 3.17

GC content: 58.58

Gene sequence:

>618_bases
ATGGGGGTCGAGGGACGCGATAAGGTCAAGGTTCTGGAGGCGGGTGCGGCGGCTTTATCGAGCCAGCTTGGCAAAACCGT
CCAACGGTTGCGCAAGGCCTATAATCTCTCGTTGTCCGAATTATCCGAGCAATCGGGGGTTGCAAAATCGATCATCAGCC
AGATCGAGCGCAACGAGACCAATCCGACGCTGGCGACCATCTGGCGGCTTTCGCAGGCGCTCGATGTTTCGATTGAGCGC
GTGTTGCAGGCGACCGAGGATGAACCTTTCCTGGAAAAAGCCTCCAAGGGGGACACACCGATTCTAGTTTCCGATGATGG
CAAATGCCGGCTGGCGATCATCGGCTGGATCAAGACGGTCGAATGGCTGCAATGGTATGATTTTGCGGCTGATCCCGGTG
GCATTCTCGAATCGGAGGCGCATCAGCGTGGTTCCGTCGAAAGCCTTTCGGTGAGTGTGGGCGAACTCGAGATCGAGGTC
GGCGGCGTGATCGAACGCGCCAAGGCGGGCGAAACCCTGCGTTATCGTTGCGACCGGCCGCATACCATCCGCAATGTCTC
GCGCAAGCCCGCCTCGGCGATGATGGTTTGCATCCTCAAAGCCGCCGCCATGGAATGA

Upstream 100 bases:

>100_bases
GACGAGGGTGGATACTATGCGGAAGCAGGATGTTTTCGTTCGATATTCCAAACAAAATCGGTTAGTCTTTCAGCCCATGG
CAGGGTGAAGGGCACGTGGC

Downstream 100 bases:

>100_bases
GAGGGCTTTGTCGTTGGCCAGCGCCTCCCCGCCACATCCAGGATCATCTCGATGGATTCGCAACAAATAGGGGAAGCCTA
TCGTCAGCGTCACTGGCGCT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MGVEGRDKVKVLEAGAAALSSQLGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIER
VLQATEDEPFLEKASKGDTPILVSDDGKCRLAIIGWIKTVEWLQWYDFAADPGGILESEAHQRGSVESLSVSVGELEIEV
GGVIERAKAGETLRYRCDRPHTIRNVSRKPASAMMVCILKAAAME

Sequences:

>Translated_205_residues
MGVEGRDKVKVLEAGAAALSSQLGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIER
VLQATEDEPFLEKASKGDTPILVSDDGKCRLAIIGWIKTVEWLQWYDFAADPGGILESEAHQRGSVESLSVSVGELEIEV
GGVIERAKAGETLRYRCDRPHTIRNVSRKPASAMMVCILKAAAME
>Mature_204_residues
GVEGRDKVKVLEAGAAALSSQLGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV
LQATEDEPFLEKASKGDTPILVSDDGKCRLAIIGWIKTVEWLQWYDFAADPGGILESEAHQRGSVESLSVSVGELEIEVG
GVIERAKAGETLRYRCDRPHTIRNVSRKPASAMMVCILKAAAME

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=169, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22409; Mature: 22278

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVEGRDKVKVLEAGAAALSSQLGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNET
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCC
NPTLATIWRLSQALDVSIERVLQATEDEPFLEKASKGDTPILVSDDGKCRLAIIGWIKTV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCCEEEEEHHHHHHH
EWLQWYDFAADPGGILESEAHQRGSVESLSVSVGELEIEVGGVIERAKAGETLRYRCDRP
HHHHHHHCCCCCCCCCCHHHHHCCCCHHEEEEECEEEEEECHHHHHHHCCCCEEEECCCC
HTIRNVSRKPASAMMVCILKAAAME
HHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GVEGRDKVKVLEAGAAALSSQLGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNET
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCC
NPTLATIWRLSQALDVSIERVLQATEDEPFLEKASKGDTPILVSDDGKCRLAIIGWIKTV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCCEEEEEHHHHHHH
EWLQWYDFAADPGGILESEAHQRGSVESLSVSVGELEIEVGGVIERAKAGETLRYRCDRP
HHHHHHHCCCCCCCCCCHHHHHCCCCHHEEEEECEEEEEECHHHHHHHCCCCEEEECCCC
HTIRNVSRKPASAMMVCILKAAAME
HHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]