Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17547007
Identifier: 17547007
GI number: 17547007
Start: 2481316
End: 2482377
Strand: Reverse
Name: 17547007
Synonym: RSc2288
Alternate gene names: NA
Gene position: 2482377-2481316 (Counterclockwise)
Preceding gene: 17547010
Following gene: 17547006
Centisome position: 66.79
GC content: 66.67
Gene sequence:
>1062_bases ATGACGACACGACCGAATACCCTCAAGCGAGCGGCGCTGCTGGCCGGCGTCACCAGCCTGCTCGCGCCACTCGGGGCACA TGCCTGCGCCACCTGCGGCTGTTCGCTCAGCACCGATGCCGCCATGGGCTACTCCGCCATCCCGGGCTGGCGCATCAGCC TGGACTACACCTACATCCCGCAGAACCAGCTGCGCCACGGCACGGGTTCGGTCGCGGCGGCGGAGGTGGCGGGCATCAAC GCGGCCGGCGGCAACCAGGAGGTCGAGCGCCAGACCATCAACCGTTATGTCAACCTCGGCGTCCACTACAGCCCGAACAG CAGTTGGAACTTCAGCGTGATCGTGCCCTACGTGGATCGCGGGCACACTACCTATGGTTCGGCCACGCCCGATCAGCTCA CCCCGGACAACGTCAGCGGCGCGACGGCCAGCGGCCTGGGCGACATCAAGCTGATCGCCAGCTACCAGGGTTTTCTGCCC ACCCACAACCTGGGCGTGCAGTTGGGCGTCAAGCTGCCGACCGGCCGCTACGGCGGCCAGAACGTGCTGACCGGCGCCAC GGTTGGGCGCAATCCGGTGCTCTTCTCCAGCGGCCCCAATGCCGCCGCGGGGCAGGCCCTGGATACCAGCCTGCAGCCCG GCACCGGCACCACCGACCTGATCCTGGGCGCCTACTACTACCAGCCCGTCAGCCAGGATTTCGATGCGTTCATCAATGGC CAGGTCCAGTCCGCCGTGCGGCAGAACCTGCGCGACGCGGGCGCCGACTTCCGCCCCGGCAATACCGCCACGATGAGCTT CGGCCTGCGCTACGAAGCGGATCCGCATATCGTGCCGCAGCTGCAGTTCAACGTGACGCGCAAGAACGCCGACAAGGGCG CGCTGGCCGATACCGCCAACACGGCCGGCACGGTGGTCTACCTGTCGCCGGGCGTGACGGTGAGCGTGATGCACAACCTT CAGGTCTATGCGTTCCTGCAGAAGGCGGTGTACAGCAATCTGCAGGGCTATCAACTTTTCCCGCGCTGGTCGGGTACCGT CGGAGCCAGCTATGCGTTCTGA
Upstream 100 bases:
>100_bases GCGCGCCGGACCGCGCGATCTTTCCGTTGTGGAGCATTGCGGGCCGCGCTCAGCCTCCTGGCTTGGGTGCGTGCCCGTGC AGGCAGGGTGGGGAATCCCG
Downstream 100 bases:
>100_bases TCTCAGCGGGCTGGCATCGCCCTCCTGGTCGCGGCGCGCGTGGCTGCGGGCCGCGGGTTCGGCGGCCCTGGGCGCCGGGT TGGGCGGTATGCCGCCCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MTTRPNTLKRAALLAGVTSLLAPLGAHACATCGCSLSTDAAMGYSAIPGWRISLDYTYIPQNQLRHGTGSVAAAEVAGIN AAGGNQEVERQTINRYVNLGVHYSPNSSWNFSVIVPYVDRGHTTYGSATPDQLTPDNVSGATASGLGDIKLIASYQGFLP THNLGVQLGVKLPTGRYGGQNVLTGATVGRNPVLFSSGPNAAAGQALDTSLQPGTGTTDLILGAYYYQPVSQDFDAFING QVQSAVRQNLRDAGADFRPGNTATMSFGLRYEADPHIVPQLQFNVTRKNADKGALADTANTAGTVVYLSPGVTVSVMHNL QVYAFLQKAVYSNLQGYQLFPRWSGTVGASYAF
Sequences:
>Translated_353_residues MTTRPNTLKRAALLAGVTSLLAPLGAHACATCGCSLSTDAAMGYSAIPGWRISLDYTYIPQNQLRHGTGSVAAAEVAGIN AAGGNQEVERQTINRYVNLGVHYSPNSSWNFSVIVPYVDRGHTTYGSATPDQLTPDNVSGATASGLGDIKLIASYQGFLP THNLGVQLGVKLPTGRYGGQNVLTGATVGRNPVLFSSGPNAAAGQALDTSLQPGTGTTDLILGAYYYQPVSQDFDAFING QVQSAVRQNLRDAGADFRPGNTATMSFGLRYEADPHIVPQLQFNVTRKNADKGALADTANTAGTVVYLSPGVTVSVMHNL QVYAFLQKAVYSNLQGYQLFPRWSGTVGASYAF >Mature_352_residues TTRPNTLKRAALLAGVTSLLAPLGAHACATCGCSLSTDAAMGYSAIPGWRISLDYTYIPQNQLRHGTGSVAAAEVAGINA AGGNQEVERQTINRYVNLGVHYSPNSSWNFSVIVPYVDRGHTTYGSATPDQLTPDNVSGATASGLGDIKLIASYQGFLPT HNLGVQLGVKLPTGRYGGQNVLTGATVGRNPVLFSSGPNAAAGQALDTSLQPGTGTTDLILGAYYYQPVSQDFDAFINGQ VQSAVRQNLRDAGADFRPGNTATMSFGLRYEADPHIVPQLQFNVTRKNADKGALADTANTAGTVVYLSPGVTVSVMHNLQ VYAFLQKAVYSNLQGYQLFPRWSGTVGASYAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37205; Mature: 37074
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRPNTLKRAALLAGVTSLLAPLGAHACATCGCSLSTDAAMGYSAIPGWRISLDYTYIP CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC QNQLRHGTGSVAAAEVAGINAAGGNQEVERQTINRYVNLGVHYSPNSSWNFSVIVPYVDR HHHHCCCCCCEEEHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEEECC GHTTYGSATPDQLTPDNVSGATASGLGDIKLIASYQGFLPTHNLGVQLGVKLPTGRYGGQ CCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC NVLTGATVGRNPVLFSSGPNAAAGQALDTSLQPGTGTTDLILGAYYYQPVSQDFDAFING CEEECCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCHHHEEEHHHHCCCCCCHHHHHCC QVQSAVRQNLRDAGADFRPGNTATMSFGLRYEADPHIVPQLQFNVTRKNADKGALADTAN HHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCC TAGTVVYLSPGVTVSVMHNLQVYAFLQKAVYSNLQGYQLFPRWSGTVGASYAF CCEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC >Mature Secondary Structure TTRPNTLKRAALLAGVTSLLAPLGAHACATCGCSLSTDAAMGYSAIPGWRISLDYTYIP CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECC QNQLRHGTGSVAAAEVAGINAAGGNQEVERQTINRYVNLGVHYSPNSSWNFSVIVPYVDR HHHHCCCCCCEEEHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEEECC GHTTYGSATPDQLTPDNVSGATASGLGDIKLIASYQGFLPTHNLGVQLGVKLPTGRYGGQ CCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC NVLTGATVGRNPVLFSSGPNAAAGQALDTSLQPGTGTTDLILGAYYYQPVSQDFDAFING CEEECCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCHHHEEEHHHHCCCCCCHHHHHCC QVQSAVRQNLRDAGADFRPGNTATMSFGLRYEADPHIVPQLQFNVTRKNADKGALADTAN HHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCC TAGTVVYLSPGVTVSVMHNLQVYAFLQKAVYSNLQGYQLFPRWSGTVGASYAF CCEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA