Click here to switch to the map view.

The map label for this gene is 17546995

Identifier: 17546995

GI number: 17546995

Start: 2469810

End: 2472656

Strand: Reverse

Name: 17546995

Synonym: RSc2276

Alternate gene names: NA

Gene position: 2472656-2469810 (Counterclockwise)

Preceding gene: 17546997

Following gene: 17546994

Centisome position: 66.53

GC content: 68.74

Gene sequence:

>2847_bases
GTGTCGGAATGGCTGGCAGCGCTGTGCGCGGCCGTGGTCGTTGCCATGCCTTGCGGGGCGCCGGCCCAACAGGCGCCGGA
TGCGGCGACTGGCGAGGGTGCTCTGCCCGCGCAAGCCGCCACCGCAGAGGCGCCGAACATTGCCTGGTTTTACGGCGACA
AGCCCCCCGTGGCGCAGCTACGCGCCTTCGATGCGGTCGTGGTCGAGCCCGACCACGGCTTCGATCCGTCACGCGCCAGG
ACGCCCGCGACGCAATGGTTCGCCTACGTGAGCGTAGGCGAGGTCGCGCCCGGGCGCCGCTGGTATCAGGCGCTGCCCAA
GGCCTGGCTGGCCGGCAGCAACGCGGCGTGGGCCTCGCGCGTGATCGACCAGTCCCAGCCGCAGTGGCCCGACTTCTACG
TCGACCACGTCATCGCGCCGCTGTGGGACAAGGGCTATCGCGGCTTCTTCCTCGATACCCTCGATTCATACCAGCTCGTC
GCCAAGGACGCCGCCGCGCGGGCAGCGCAGGAGGCCGGCATGATCCGGGTGATCCGGGCCATCAAGGCACGCTATCCGGA
GGCGAAGCTGATCTTCAACCGCGGCTTCGAGATCCTGCCGCAGGTGCATGACCTGGTCTACGCGGTGGCGTTCGAGTCGC
TGTACCGCAGCTGGGACCAGGGCAGCAAGCAGTACCGCGAAGTCAACGATGCCGACCGCGCGTGGCTGATGGGCCAGGCG
CGCAGGATCCGCGACGAATACCGCCTGCCCGTCATCTCCATCGACTACTGTCCGCCCGCCGATCGCGCCTGCGCGCGCGA
GACCGCCAGGCGCATCGAGGCGCAGGGGCTGATTCCCTATGTGACCGATCCGGCGCTGTCGACGATCGGGGTCGGGCGCA
TCGAGGTGCTGCCGCGCAAGGTGCTGATCCTGCAGGACCGCGCCCCGAACACCGATATCGACACCAGCGAAGGCGTGCGC
TTTCTCGCCATGCCGCTCAACTTCCTCGGCTACGACGTCGAGTACGCCGACCTCGGCCAGCCGCTGCCGGCCGAGGTGCC
GCCCGACCGCTATGCCGGCGTGGTGGTGTGGATCAACTCCGGTCCGGTCAGGCAGGTGGCGGCGCTGTCGTCGTGGGTGC
GGCAGCGCATTCACGACGGCGTGCGCATTGCCTTCATGAACGAGCTCGGCCTGCCGGCGGACGGCAGCTTGACCGACATG
CTCGGGCTGCAGCTGGTGCGCGGCCATGCCACCGGGCCGCTGTCGGTGGTGTCGCAGGACCGGATCGTCGGCTTCGAAAT
GGCGCCCCGGCCCGACCGGCGTGCCGCGCAGCCGATCCGGGTGGGCGCGGATGGGCAGTCGCTGCTGCGCCTGAAGTCGG
GCGATTTCGAGTTCGATGCCGCCGCCATCACACCGTGGGGCGGCTACGTGCTCAACCCGTACGCGGTGTTTTCGCTGGGC
ACGATCGAGCAGTCGCGCTGGGTGATCCAGCCGCTGGCGTTCCTGCGCCGGGCGCTGGCGCTGCCGGACATGCCGATCCC
GGATGTGACGAGCGAGAACGGCCGGCGCCTGATGCTGGTCCATGTGGACGGCGACGGCTTCGCCTCGCGCGCTGAATTTC
CCGGCCCCGAATATTCCGGCGAAGTGCTGATGCAGGAGGTCTGGGAGCGCTACGGCATTCCGACCACGCTGTCGGTCATC
GAGGGCGAGGTGGGGCCGAGCGGCCTGTATCCCAAGCTCACGCCGCGCCTGGAGGCGATTGCCCGGAAGATGTTCGCGCT
GCCCTATGTCGAGCTCGGCACGCACACCTATTCGCACCCCTTCAAGTGGGGCCGCACGGTGCCGGGCGCGCCCGCCCAGG
CCGGGGGGGGCGATTCCGCCTTCGCGCTGACCATTCCGGGCTACAAATTCAGCCTGGAGCGGGAGATCGGCGGCTCCATC
CGCTACATCAACGCGAGGCTGGCGCCGCCGGACAAGCGGGTCCGGATCGTGCAATGGTCGGGCGACTGCCGGCCGCCGGA
GCTCGCGGTGCGCATGGCATGGGACGCCGGGGTGGGCAACATCAACGGCGGCGATACCACCATCACCCGCAGTTCGCCGT
CGTGGACCGAGATCGCATCGCTGGGCATCGACAAGGGGCCCGGCGCCTACCAGGTCTTCGCCCCCAACCAGAACGAGAAC
GTCTATACCAATGACTGGACCGGTCCGTACTATGGCTTCGATCGCCTGATCGAAACGCTGCAGATGACCGATACGCCCTA
TCGCTTCAAGCCGATCAACCTCTACTACCACATGTACTCGGGCACCAAGCTTGCGTCGCTCAAGGCATTGAAGAAGGTCT
ACGACTACGCGCTCGCGCAGCCGGTGCTGCCCATCTATGCGACCGACTACGTGGCCAAGGTGCTCGACTTCCGAGACATG
GCCATCGCCCGCGACGGCGATGCCTGGGTCGTGCGCGGCAACGGCGATCTGCGCGAGCTGCGCTGGATGGCGCCGGGCAC
GCCCCGCCTGGCCGATGCGCACGGCGTCGCGGGCTATGGCAAGGCGGCCGGCGGAATCTACATCCATCTTGATGGCGGCG
CGGCACGCTTTGCCGTGTCGACCGATGCGCAGGCCGTCCAGCCGGCCTATCTGGCCGAAGCCGCGGCCTTCGTGCAGCGG
CTGGAGCGGCGCGGCAACGGCATGTCCTTCGACGCGGGCGGCTACTACAAGCCGTTCGTGCGGCTCGCCAATGCCGGCGC
GTGCAGCATCCAGGTCGACGGCCGGCCGGCCCGCGCGGCCCATGCGCAGGACAACACGGTGCGCGTGGAGCTGTCCGGCG
TCGCCGCGCAGAGCGTGACTTACCAGCGTGTCGATGTGGTCTGCTGA

Upstream 100 bases:

>100_bases
GGCCTAATGCATGCATTCAGTTGCATAGGAGTTGCTTTCCATGTGGTTAACAAGCCGCCGACAGCGGCGCGCCGCGGGGG
AACGGGGAAAAACGGCAAGG

Downstream 100 bases:

>100_bases
TCTGGCGCCCCGCGAACGGCTGCTGCCGCCCTGGCTGATCGGCACGCTCGGCGGGTTCGTCGCGCTGGCGCTTGCCATGA
TGTTTCCGCGCGAGCGCCTC

Product: signal peptide protein

Products: NA

Alternate protein names: Polysaccharide Deacetylase; Polysaccharide Transport System Component Protein

Number of amino acids: Translated: 948; Mature: 947

Protein sequence:

>948_residues
MSEWLAALCAAVVVAMPCGAPAQQAPDAATGEGALPAQAATAEAPNIAWFYGDKPPVAQLRAFDAVVVEPDHGFDPSRAR
TPATQWFAYVSVGEVAPGRRWYQALPKAWLAGSNAAWASRVIDQSQPQWPDFYVDHVIAPLWDKGYRGFFLDTLDSYQLV
AKDAAARAAQEAGMIRVIRAIKARYPEAKLIFNRGFEILPQVHDLVYAVAFESLYRSWDQGSKQYREVNDADRAWLMGQA
RRIRDEYRLPVISIDYCPPADRACARETARRIEAQGLIPYVTDPALSTIGVGRIEVLPRKVLILQDRAPNTDIDTSEGVR
FLAMPLNFLGYDVEYADLGQPLPAEVPPDRYAGVVVWINSGPVRQVAALSSWVRQRIHDGVRIAFMNELGLPADGSLTDM
LGLQLVRGHATGPLSVVSQDRIVGFEMAPRPDRRAAQPIRVGADGQSLLRLKSGDFEFDAAAITPWGGYVLNPYAVFSLG
TIEQSRWVIQPLAFLRRALALPDMPIPDVTSENGRRLMLVHVDGDGFASRAEFPGPEYSGEVLMQEVWERYGIPTTLSVI
EGEVGPSGLYPKLTPRLEAIARKMFALPYVELGTHTYSHPFKWGRTVPGAPAQAGGGDSAFALTIPGYKFSLEREIGGSI
RYINARLAPPDKRVRIVQWSGDCRPPELAVRMAWDAGVGNINGGDTTITRSSPSWTEIASLGIDKGPGAYQVFAPNQNEN
VYTNDWTGPYYGFDRLIETLQMTDTPYRFKPINLYYHMYSGTKLASLKALKKVYDYALAQPVLPIYATDYVAKVLDFRDM
AIARDGDAWVVRGNGDLRELRWMAPGTPRLADAHGVAGYGKAAGGIYIHLDGGAARFAVSTDAQAVQPAYLAEAAAFVQR
LERRGNGMSFDAGGYYKPFVRLANAGACSIQVDGRPARAAHAQDNTVRVELSGVAAQSVTYQRVDVVC

Sequences:

>Translated_948_residues
MSEWLAALCAAVVVAMPCGAPAQQAPDAATGEGALPAQAATAEAPNIAWFYGDKPPVAQLRAFDAVVVEPDHGFDPSRAR
TPATQWFAYVSVGEVAPGRRWYQALPKAWLAGSNAAWASRVIDQSQPQWPDFYVDHVIAPLWDKGYRGFFLDTLDSYQLV
AKDAAARAAQEAGMIRVIRAIKARYPEAKLIFNRGFEILPQVHDLVYAVAFESLYRSWDQGSKQYREVNDADRAWLMGQA
RRIRDEYRLPVISIDYCPPADRACARETARRIEAQGLIPYVTDPALSTIGVGRIEVLPRKVLILQDRAPNTDIDTSEGVR
FLAMPLNFLGYDVEYADLGQPLPAEVPPDRYAGVVVWINSGPVRQVAALSSWVRQRIHDGVRIAFMNELGLPADGSLTDM
LGLQLVRGHATGPLSVVSQDRIVGFEMAPRPDRRAAQPIRVGADGQSLLRLKSGDFEFDAAAITPWGGYVLNPYAVFSLG
TIEQSRWVIQPLAFLRRALALPDMPIPDVTSENGRRLMLVHVDGDGFASRAEFPGPEYSGEVLMQEVWERYGIPTTLSVI
EGEVGPSGLYPKLTPRLEAIARKMFALPYVELGTHTYSHPFKWGRTVPGAPAQAGGGDSAFALTIPGYKFSLEREIGGSI
RYINARLAPPDKRVRIVQWSGDCRPPELAVRMAWDAGVGNINGGDTTITRSSPSWTEIASLGIDKGPGAYQVFAPNQNEN
VYTNDWTGPYYGFDRLIETLQMTDTPYRFKPINLYYHMYSGTKLASLKALKKVYDYALAQPVLPIYATDYVAKVLDFRDM
AIARDGDAWVVRGNGDLRELRWMAPGTPRLADAHGVAGYGKAAGGIYIHLDGGAARFAVSTDAQAVQPAYLAEAAAFVQR
LERRGNGMSFDAGGYYKPFVRLANAGACSIQVDGRPARAAHAQDNTVRVELSGVAAQSVTYQRVDVVC
>Mature_947_residues
SEWLAALCAAVVVAMPCGAPAQQAPDAATGEGALPAQAATAEAPNIAWFYGDKPPVAQLRAFDAVVVEPDHGFDPSRART
PATQWFAYVSVGEVAPGRRWYQALPKAWLAGSNAAWASRVIDQSQPQWPDFYVDHVIAPLWDKGYRGFFLDTLDSYQLVA
KDAAARAAQEAGMIRVIRAIKARYPEAKLIFNRGFEILPQVHDLVYAVAFESLYRSWDQGSKQYREVNDADRAWLMGQAR
RIRDEYRLPVISIDYCPPADRACARETARRIEAQGLIPYVTDPALSTIGVGRIEVLPRKVLILQDRAPNTDIDTSEGVRF
LAMPLNFLGYDVEYADLGQPLPAEVPPDRYAGVVVWINSGPVRQVAALSSWVRQRIHDGVRIAFMNELGLPADGSLTDML
GLQLVRGHATGPLSVVSQDRIVGFEMAPRPDRRAAQPIRVGADGQSLLRLKSGDFEFDAAAITPWGGYVLNPYAVFSLGT
IEQSRWVIQPLAFLRRALALPDMPIPDVTSENGRRLMLVHVDGDGFASRAEFPGPEYSGEVLMQEVWERYGIPTTLSVIE
GEVGPSGLYPKLTPRLEAIARKMFALPYVELGTHTYSHPFKWGRTVPGAPAQAGGGDSAFALTIPGYKFSLEREIGGSIR
YINARLAPPDKRVRIVQWSGDCRPPELAVRMAWDAGVGNINGGDTTITRSSPSWTEIASLGIDKGPGAYQVFAPNQNENV
YTNDWTGPYYGFDRLIETLQMTDTPYRFKPINLYYHMYSGTKLASLKALKKVYDYALAQPVLPIYATDYVAKVLDFRDMA
IARDGDAWVVRGNGDLRELRWMAPGTPRLADAHGVAGYGKAAGGIYIHLDGGAARFAVSTDAQAVQPAYLAEAAAFVQRL
ERRGNGMSFDAGGYYKPFVRLANAGACSIQVDGRPARAAHAQDNTVRVELSGVAAQSVTYQRVDVVC

Specific function: Unknown

COG id: COG3868

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 103934; Mature: 103803

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEWLAALCAAVVVAMPCGAPAQQAPDAATGEGALPAQAATAEAPNIAWFYGDKPPVAQL
CCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHCCCCCCEEEEECCCCCHHHH
RAFDAVVVEPDHGFDPSRARTPATQWFAYVSVGEVAPGRRWYQALPKAWLAGSNAAWASR
EECEEEEECCCCCCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHH
VIDQSQPQWPDFYVDHVIAPLWDKGYRGFFLDTLDSYQLVAKDAAARAAQEAGMIRVIRA
HHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHH
IKARYPEAKLIFNRGFEILPQVHDLVYAVAFESLYRSWDQGSKQYREVNDADRAWLMGQA
HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RRIRDEYRLPVISIDYCPPADRACARETARRIEAQGLIPYVTDPALSTIGVGRIEVLPRK
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCEEECCCE
VLILQDRAPNTDIDTSEGVRFLAMPLNFLGYDVEYADLGQPLPAEVPPDRYAGVVVWINS
EEEEECCCCCCCCCCCCCCEEEEECHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEEECC
GPVRQVAALSSWVRQRIHDGVRIAFMNELGLPADGSLTDMLGLQLVRGHATGPLSVVSQD
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCC
RIVGFEMAPRPDRRAAQPIRVGADGQSLLRLKSGDFEFDAAAITPWGGYVLNPYAVFSLG
CEEEEECCCCCCCCCCCCEEECCCCHHEEEEECCCCEECEEEECCCCCEEECCEEEEEEC
TIEQSRWVIQPLAFLRRALALPDMPIPDVTSENGRRLMLVHVDGDGFASRAEFPGPEYSG
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCH
EVLMQEVWERYGIPTTLSVIEGEVGPSGLYPKLTPRLEAIARKMFALPYVELGTHTYSHP
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCC
FKWGRTVPGAPAQAGGGDSAFALTIPGYKFSLEREIGGSIRYINARLAPPDKRVRIVQWS
CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEEEECCCCCCEEEEEEC
GDCRPPELAVRMAWDAGVGNINGGDTTITRSSPSWTEIASLGIDKGPGAYQVFAPNQNEN
CCCCCHHEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCEEEEECCCCCCC
VYTNDWTGPYYGFDRLIETLQMTDTPYRFKPINLYYHMYSGTKLASLKALKKVYDYALAQ
EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHC
PVLPIYATDYVAKVLDFRDMAIARDGDAWVVRGNGDLRELRWMAPGTPRLADAHGVAGYG
CCCHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCHHEEEECCCCCCCCCCCCCCCCCC
KAAGGIYIHLDGGAARFAVSTDAQAVQPAYLAEAAAFVQRLERRGNGMSFDAGGYYKPFV
CCCCEEEEEECCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
RLANAGACSIQVDGRPARAAHAQDNTVRVELSGVAAQSVTYQRVDVVC
HHCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCEECCEEEEEEEECC
>Mature Secondary Structure 
SEWLAALCAAVVVAMPCGAPAQQAPDAATGEGALPAQAATAEAPNIAWFYGDKPPVAQL
CHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHCCCCCCEEEEECCCCCHHHH
RAFDAVVVEPDHGFDPSRARTPATQWFAYVSVGEVAPGRRWYQALPKAWLAGSNAAWASR
EECEEEEECCCCCCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHH
VIDQSQPQWPDFYVDHVIAPLWDKGYRGFFLDTLDSYQLVAKDAAARAAQEAGMIRVIRA
HHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHH
IKARYPEAKLIFNRGFEILPQVHDLVYAVAFESLYRSWDQGSKQYREVNDADRAWLMGQA
HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RRIRDEYRLPVISIDYCPPADRACARETARRIEAQGLIPYVTDPALSTIGVGRIEVLPRK
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCCEEECCCE
VLILQDRAPNTDIDTSEGVRFLAMPLNFLGYDVEYADLGQPLPAEVPPDRYAGVVVWINS
EEEEECCCCCCCCCCCCCCEEEEECHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEEECC
GPVRQVAALSSWVRQRIHDGVRIAFMNELGLPADGSLTDMLGLQLVRGHATGPLSVVSQD
CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCC
RIVGFEMAPRPDRRAAQPIRVGADGQSLLRLKSGDFEFDAAAITPWGGYVLNPYAVFSLG
CEEEEECCCCCCCCCCCCEEECCCCHHEEEEECCCCEECEEEECCCCCEEECCEEEEEEC
TIEQSRWVIQPLAFLRRALALPDMPIPDVTSENGRRLMLVHVDGDGFASRAEFPGPEYSG
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCH
EVLMQEVWERYGIPTTLSVIEGEVGPSGLYPKLTPRLEAIARKMFALPYVELGTHTYSHP
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCC
FKWGRTVPGAPAQAGGGDSAFALTIPGYKFSLEREIGGSIRYINARLAPPDKRVRIVQWS
CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEEEEECCCCCCEEEEEEC
GDCRPPELAVRMAWDAGVGNINGGDTTITRSSPSWTEIASLGIDKGPGAYQVFAPNQNEN
CCCCCHHEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCEEEEECCCCCCC
VYTNDWTGPYYGFDRLIETLQMTDTPYRFKPINLYYHMYSGTKLASLKALKKVYDYALAQ
EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHC
PVLPIYATDYVAKVLDFRDMAIARDGDAWVVRGNGDLRELRWMAPGTPRLADAHGVAGYG
CCCHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCHHEEEECCCCCCCCCCCCCCCCCC
KAAGGIYIHLDGGAARFAVSTDAQAVQPAYLAEAAAFVQRLERRGNGMSFDAGGYYKPFV
CCCCEEEEEECCCCEEEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
RLANAGACSIQVDGRPARAAHAQDNTVRVELSGVAAQSVTYQRVDVVC
HHCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCEECCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA