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The map label for this gene is ycfH [C]

Identifier: 17546506

GI number: 17546506

Start: 1922078

End: 1922881

Strand: Direct

Name: ycfH [C]

Synonym: RSc1787

Alternate gene names: 17546506

Gene position: 1922078-1922881 (Clockwise)

Preceding gene: 17546505

Following gene: 17546507

Centisome position: 51.72

GC content: 66.67

Gene sequence:

>804_bases
ATGTTTGTCGATTCCCACTGCCACATCAATTTCCCCGATCTGCGCGCGCGCCTGCCGGAGCTGCTGGCGCACATGCGCGA
GAACCGGGTCACGCACGCGCTGTGCATCTCGGTCACGCTGGAGGACTTCCCCAGCGTGCTGGAGATCGCCGAACAGGAAC
CGAACATCTACGCCACCGTGGGCGTGCACCCGGACGCCGAGGCGGACCTGGAGGAAGGCACGCGCATCGAAGAGCCCACG
CTGGAGCGCCTGCTGGCGCTGGCCGACCATCCGCGCGTGGTCGGCATCGGCGAGACAGGGCTGGACTACTACCGCCTGAA
CGGGCGCTCCGTGGCCGACATGGAATGGCAGCGCGAGCGCTTCCGCACCCACATCCGCGCGTCCAGGCAGACCGGCAAGC
CGCTGGTGATCCACACCCGCTCGGCGGCCGACGATACGCTGGCCATCATGCGGGAAGAGGGCGCCGAGGCCGCGCGCGGC
GTCATGCACTGCTTCACGGAAACGTGGGACGTGGCAAAGGCCGCGCTGGACCTGGGCTTCTACATTTCGTTCTCGGGCAT
CGTCACCTTCAAGAGCGCGGCCGATCTGCAGGAAACCGCCAGGAAGGTACCGCTGGACCGCATGCTGATCGAGACCGACT
CGCCGTACCTGGCGCCGGTGCCGTTCCGCGGCAAGACCAACGAGCCGGCCTACGTGCGGCACGTGGGCGAATGCCTCGCC
ACGCTGCGCGGCGAGCCGCTGGAGCACATCGCCAGCGCGACAACCGAGAATTTCTTCCGTCTATTCAATGCGATACCGAG
ATAA

Upstream 100 bases:

>100_bases
CTGCTGGGCAAGAACATCGGCAGCTCGCGGCCCACGCAGACACTCTGATCCCATCCTGATACGGCGCCTGAAAAGGGCGC
CGTAATGCGCTGATTCTTCG

Downstream 100 bases:

>100_bases
CCTCAAGCGGAGCCTGAAGCAGGCCGCGCTGGCGGCCGGGCTGCTGATGACGATGTCGTGCGCCGTCCGCGCCACGCCGC
AGGACGACCTGCGCTCCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MFVDSHCHINFPDLRARLPELLAHMRENRVTHALCISVTLEDFPSVLEIAEQEPNIYATVGVHPDAEADLEEGTRIEEPT
LERLLALADHPRVVGIGETGLDYYRLNGRSVADMEWQRERFRTHIRASRQTGKPLVIHTRSAADDTLAIMREEGAEAARG
VMHCFTETWDVAKAALDLGFYISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGECLA
TLRGEPLEHIASATTENFFRLFNAIPR

Sequences:

>Translated_267_residues
MFVDSHCHINFPDLRARLPELLAHMRENRVTHALCISVTLEDFPSVLEIAEQEPNIYATVGVHPDAEADLEEGTRIEEPT
LERLLALADHPRVVGIGETGLDYYRLNGRSVADMEWQRERFRTHIRASRQTGKPLVIHTRSAADDTLAIMREEGAEAARG
VMHCFTETWDVAKAALDLGFYISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGECLA
TLRGEPLEHIASATTENFFRLFNAIPR
>Mature_267_residues
MFVDSHCHINFPDLRARLPELLAHMRENRVTHALCISVTLEDFPSVLEIAEQEPNIYATVGVHPDAEADLEEGTRIEEPT
LERLLALADHPRVVGIGETGLDYYRLNGRSVADMEWQRERFRTHIRASRQTGKPLVIHTRSAADDTLAIMREEGAEAARG
VMHCFTETWDVAKAALDLGFYISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGECLA
TLRGEPLEHIASATTENFFRLFNAIPR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=28.1481481481481, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI225903439, Length=249, Percent_Identity=29.3172690763052, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=25.7575757575758, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=25.7575757575758, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI225903424, Length=278, Percent_Identity=27.3381294964029, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=26.0223048327138, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=25.5725190839695, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=25.6637168141593, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1787342, Length=266, Percent_Identity=45.1127819548872, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI87082439, Length=265, Percent_Identity=29.0566037735849, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI48994985, Length=239, Percent_Identity=29.7071129707113, Blast_Score=104, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=289, Percent_Identity=27.681660899654, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=271, Percent_Identity=26.9372693726937, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=303, Percent_Identity=28.3828382838284, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=197, Percent_Identity=29.4416243654822, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221330018, Length=288, Percent_Identity=29.8611111111111, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24586117, Length=288, Percent_Identity=29.8611111111111, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24648690, Length=237, Percent_Identity=29.957805907173, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30035; Mature: 30035

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFPDLRARLPELLAHMRENRVTHALCISVTLEDFPSVLEIAEQEPNIYATV
CEECCCCEECCHHHHHHHHHHHHHHHHCCCCEEHEEEEEHHHHHHHHHHHHCCCCEEEEE
GVHPDAEADLEEGTRIEEPTLERLLALADHPRVVGIGETGLDYYRLNGRSVADMEWQRER
ECCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEECCCEECHHHHHHHH
FRTHIRASRQTGKPLVIHTRSAADDTLAIMREEGAEAARGVMHCFTETWDVAKAALDLGF
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
YISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGECLA
EEEECCEEEECCHHHHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHH
TLRGEPLEHIASATTENFFRLFNAIPR
HHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVDSHCHINFPDLRARLPELLAHMRENRVTHALCISVTLEDFPSVLEIAEQEPNIYATV
CEECCCCEECCHHHHHHHHHHHHHHHHCCCCEEHEEEEEHHHHHHHHHHHHCCCCEEEEE
GVHPDAEADLEEGTRIEEPTLERLLALADHPRVVGIGETGLDYYRLNGRSVADMEWQRER
ECCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEECCCEECHHHHHHHH
FRTHIRASRQTGKPLVIHTRSAADDTLAIMREEGAEAARGVMHCFTETWDVAKAALDLGF
HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
YISFSGIVTFKSAADLQETARKVPLDRMLIETDSPYLAPVPFRGKTNEPAYVRHVGECLA
EEEECCEEEECCHHHHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHH
TLRGEPLEHIASATTENFFRLFNAIPR
HHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]