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The map label for this gene is 17546374

Identifier: 17546374

GI number: 17546374

Start: 1781995

End: 1782999

Strand: Direct

Name: 17546374

Synonym: RSc1655

Alternate gene names: NA

Gene position: 1781995-1782999 (Clockwise)

Preceding gene: 17546373

Following gene: 17546394

Centisome position: 47.95

GC content: 60.1

Gene sequence:

>1005_bases
ATGGCCTCTATCCAAAAGGTAGCCACTGGCTGGCGCGCTCAGATCAGCGTGAAAGGCCAACGCGACGATCGGACGTTCGA
TACTAAGAGTGCAGCTCAGGAATGGGCTGTGCGGCGCGAGGCTGAACTGCGGTCCATTCAGGGTGGCCAGGGTAGCAAAA
CGCACACGGTTGGCGATGTGCTCGATGAGTATCAGAAATCGGTTAGTCCAACTAAGCGAGGCTCGCGCTGGGAGATCCTG
CGTCTTGACCTGATTGGTCGGAAGAGGATTGAGGGAAAGCCATTCCGGGAGATCCGGCTTGCCGATCTGAGGCCGCAACA
CATTGCAGCATGGCGTGATGTCCGGGCTCGGGAGGTGGCCGGCTCCTCGGTATCCCGGGAAATGTCGCTGCTATCACATG
CGCTAGAGGTGGCCCGCAAGGAATGGGGTTGGCTCGTCACGGATCCGATGAAAGACGTTCGGCGGCCGCCGGATAACCCG
CCGCGCCAGCGGCTGGTAAGTGATAACGAGATCGAGAGAATCACACTGGCGCTTGGCTATCAGGAGGGGAAGCCCGTGGC
CTTGCCCTCACAGCGCATCGCGGTCGCCTTTCTTCTTGCGATCGAGACGGCGATGCGATCAGGTGAGATCCTTGGGTTGA
CCAGCTCGACGGTCGACTATAACCGCCGTGTCGCCCATCTACCGCTGACCAAGAATGGGGGGGCACGCGACGTGCCATTG
TCGACGCGAGCGGTTGAGTTGCTGAGAATGTTGCCGGCGGTAGAGGTTGGTGACCCGCTGCTTGGACTGTCCGCGGCGAG
TCGCGACGCGCTTTTCCGCAAGGCAAAAGAAAAGGCCGGCATTGCCGACCTCACATTCCATGACACGCGACACGAGGCGA
TCACGCGCTTGGCCAAGAAATTGCAGCCGCTCGACCTGGCCCGGATGACCGGGCACACGAATCTGCAAGAACTGATGACC
TACTACAACGAATCCGCCGAAAACATTGCGCAGCGGCTCGGGTAA

Upstream 100 bases:

>100_bases
TTGCGGTCTCCGCTGACGGCCAGCCGGCCCCTCTGAACGCCACTGTATAATCGCCCGCGCTCCCCGGAATTTCCCCGCGA
GCTCCCCGCGAGAACTCTAC

Downstream 100 bases:

>100_bases
TCAGTCTGTTGCGCGCGGGCGGCCAATTACTCTTTCGCGGTATGACTCGGTCCATGTGATGACTTCGGACGCTTTCCAGC
GCGGGAGAGATTTCGTCGTG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MASIQKVATGWRAQISVKGQRDDRTFDTKSAAQEWAVRREAELRSIQGGQGSKTHTVGDVLDEYQKSVSPTKRGSRWEIL
RLDLIGRKRIEGKPFREIRLADLRPQHIAAWRDVRAREVAGSSVSREMSLLSHALEVARKEWGWLVTDPMKDVRRPPDNP
PRQRLVSDNEIERITLALGYQEGKPVALPSQRIAVAFLLAIETAMRSGEILGLTSSTVDYNRRVAHLPLTKNGGARDVPL
STRAVELLRMLPAVEVGDPLLGLSAASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKKLQPLDLARMTGHTNLQELMT
YYNESAENIAQRLG

Sequences:

>Translated_334_residues
MASIQKVATGWRAQISVKGQRDDRTFDTKSAAQEWAVRREAELRSIQGGQGSKTHTVGDVLDEYQKSVSPTKRGSRWEIL
RLDLIGRKRIEGKPFREIRLADLRPQHIAAWRDVRAREVAGSSVSREMSLLSHALEVARKEWGWLVTDPMKDVRRPPDNP
PRQRLVSDNEIERITLALGYQEGKPVALPSQRIAVAFLLAIETAMRSGEILGLTSSTVDYNRRVAHLPLTKNGGARDVPL
STRAVELLRMLPAVEVGDPLLGLSAASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKKLQPLDLARMTGHTNLQELMT
YYNESAENIAQRLG
>Mature_333_residues
ASIQKVATGWRAQISVKGQRDDRTFDTKSAAQEWAVRREAELRSIQGGQGSKTHTVGDVLDEYQKSVSPTKRGSRWEILR
LDLIGRKRIEGKPFREIRLADLRPQHIAAWRDVRAREVAGSSVSREMSLLSHALEVARKEWGWLVTDPMKDVRRPPDNPP
RQRLVSDNEIERITLALGYQEGKPVALPSQRIAVAFLLAIETAMRSGEILGLTSSTVDYNRRVAHLPLTKNGGARDVPLS
TRAVELLRMLPAVEVGDPLLGLSAASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKKLQPLDLARMTGHTNLQELMTY
YNESAENIAQRLG

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37388; Mature: 37257

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIQKVATGWRAQISVKGQRDDRTFDTKSAAQEWAVRREAELRSIQGGQGSKTHTVGDV
CCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LDEYQKSVSPTKRGSRWEILRLDLIGRKRIEGKPFREIRLADLRPQHIAAWRDVRAREVA
HHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHH
GSSVSREMSLLSHALEVARKEWGWLVTDPMKDVRRPPDNPPRQRLVSDNEIERITLALGY
CCHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCCHHHHCCCCCCCEEEEEEEEC
QEGKPVALPSQRIAVAFLLAIETAMRSGEILGLTSSTVDYNRRVAHLPLTKNGGARDVPL
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCEECCCCCCCCCC
STRAVELLRMLPAVEVGDPLLGLSAASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
LQPLDLARMTGHTNLQELMTYYNESAENIAQRLG
CCCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
ASIQKVATGWRAQISVKGQRDDRTFDTKSAAQEWAVRREAELRSIQGGQGSKTHTVGDV
CCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LDEYQKSVSPTKRGSRWEILRLDLIGRKRIEGKPFREIRLADLRPQHIAAWRDVRAREVA
HHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHH
GSSVSREMSLLSHALEVARKEWGWLVTDPMKDVRRPPDNPPRQRLVSDNEIERITLALGY
CCHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCCHHHHCCCCCCCEEEEEEEEC
QEGKPVALPSQRIAVAFLLAIETAMRSGEILGLTSSTVDYNRRVAHLPLTKNGGARDVPL
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCEECCCCCCCCCC
STRAVELLRMLPAVEVGDPLLGLSAASRDALFRKAKEKAGIADLTFHDTRHEAITRLAKK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
LQPLDLARMTGHTNLQELMTYYNESAENIAQRLG
CCCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]